Protein–RNA interactions for Protein: P48436

SOX9, Transcription factor SOX-9, humanhuman

Predictions only

Length 509 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX9P48436 Y_RNA.542-201ENST00000384641 111 ntBASIC2.51□□□□□ -2.01
SOX9P48436 MIR1289-2-201ENST00000408360 111 ntBASIC2.51□□□□□ -2.01
SOX9P48436 RNA5SP127-201ENST00000411051 133 ntBASIC2.51□□□□□ -2.01
SOX9P48436 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC2.51□□□□□ -2.01
SOX9P48436 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC2.51□□□□□ -2.01
SOX9P48436 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC2.51□□□□□ -2.01
SOX9P48436 SCARNA16.3-201ENST00000516595 184 ntBASIC2.51□□□□□ -2.01
SOX9P48436 SNORA31.17-201ENST00000516953 127 ntBASIC2.51□□□□□ -2.01
SOX9P48436 RNU6-1116P-201ENST00000517269 99 ntBASIC2.51□□□□□ -2.01
SOX9P48436 AL049779.4-201ENST00000604500 156 ntBASIC2.51□□□□□ -2.01
SOX9P48436 AC008555.8-201ENST00000623602 2168 ntBASIC2.51□□□□□ -2.01
SOX9P48436 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
SOX9P48436 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
SOX9P48436 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC2.5□□□□□ -2.01
SOX9P48436 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC2.5□□□□□ -2.01
SOX9P48436 RNU6-268P-201ENST00000364174 107 ntBASIC2.5□□□□□ -2.01
SOX9P48436 RNU6-1336P-201ENST00000383886 109 ntBASIC2.5□□□□□ -2.01
SOX9P48436 Y_RNA.420-201ENST00000384043 110 ntBASIC2.5□□□□□ -2.01
SOX9P48436 SNORA19-201ENST00000384737 128 ntBASIC2.5□□□□□ -2.01
SOX9P48436 RNA5SP212-201ENST00000391223 107 ntBASIC2.5□□□□□ -2.01
SOX9P48436 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC2.5□□□□□ -2.01
SOX9P48436 RNA5SP272-201ENST00000516095 111 ntBASIC2.5□□□□□ -2.01
SOX9P48436 IGKV3-31-201ENST00000523109 329 ntBASIC2.5□□□□□ -2.01
SOX9P48436 AC007751.1-201ENST00000529260 376 ntBASIC2.5□□□□□ -2.01
SOX9P48436 MIR4287-201ENST00000579398 78 ntBASIC2.5□□□□□ -2.01
SOX9P48436 MIR3129-201ENST00000581095 76 ntBASIC2.5□□□□□ -2.01
SOX9P48436 AL365205.2-201ENST00000594586 68 ntBASIC2.5□□□□□ -2.01
SOX9P48436 MIRLET7C-201ENST00000362160 84 ntBASIC2.49□□□□□ -2.01
SOX9P48436 RNU6-833P-201ENST00000363486 107 ntBASIC2.49□□□□□ -2.01
SOX9P48436 SNORD18B-201ENST00000365659 72 ntBASIC2.49□□□□□ -2.01
SOX9P48436 RNU1-138P-201ENST00000384093 164 ntBASIC2.49□□□□□ -2.01
SOX9P48436 SNORA20-201ENST00000384662 132 ntBASIC2.49□□□□□ -2.01
SOX9P48436 RNU6-360P-201ENST00000390944 104 ntBASIC2.49□□□□□ -2.01
SOX9P48436 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC2.49□□□□□ -2.01
SOX9P48436 AC131055.1-201ENST00000584626 316 ntBASIC2.49□□□□□ -2.01
SOX9P48436 AC021506.2-201ENST00000612354 169 ntBASIC2.49□□□□□ -2.01
SOX9P48436 AC015726.2-201ENST00000620112 122 ntBASIC2.49□□□□□ -2.01
SOX9P48436 AL513423.1-201ENST00000621695 132 ntBASIC2.49□□□□□ -2.01
SOX9P48436 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.49□□□□□ -2.01
SOX9P48436 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
SOX9P48436 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
SOX9P48436 MIR764-201ENST00000390811 85 ntBASIC2.48□□□□□ -2.01
SOX9P48436 AC092991.1-201ENST00000477176 376 ntBASIC2.48□□□□□ -2.01
SOX9P48436 AP001328.1-201ENST00000528550 176 ntBASIC2.48□□□□□ -2.01
SOX9P48436 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC2.48□□□□□ -2.01
SOX9P48436 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC2.47□□□□□ -2.01
SOX9P48436 AL157777.2-201ENST00000258070 137 ntBASIC2.47□□□□□ -2.01
SOX9P48436 DEFA7P-201ENST00000382676 285 ntBASIC2.47□□□□□ -2.01
SOX9P48436 MIR624-201ENST00000385217 97 ntBASIC2.47□□□□□ -2.01
SOX9P48436 RNU6-460P-201ENST00000391158 108 ntBASIC2.47□□□□□ -2.01
SOX9P48436 PGBD4P5-201ENST00000445958 426 ntBASIC2.47□□□□□ -2.01
SOX9P48436 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.47□□□□□ -2.01
SOX9P48436 AC026436.1-201ENST00000510537 270 ntBASIC2.47□□□□□ -2.01
SOX9P48436 AC103810.6-201ENST00000606708 136 ntBASIC2.47□□□□□ -2.01
SOX9P48436 TUG1_4.1-201ENST00000619464 181 ntBASIC2.47□□□□□ -2.01
SOX9P48436 SNORD3E-202ENST00000627253 216 ntBASIC2.47□□□□□ -2.01
SOX9P48436 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
SOX9P48436 RNU6-1292P-201ENST00000383856 107 ntBASIC2.46□□□□□ -2.02
SOX9P48436 SNORA1-201ENST00000384107 130 ntBASIC2.46□□□□□ -2.02
SOX9P48436 MIR452-201ENST00000385020 85 ntBASIC2.46□□□□□ -2.02
SOX9P48436 RNU6-257P-201ENST00000410238 98 ntBASIC2.46□□□□□ -2.02
SOX9P48436 RNU7-197P-201ENST00000458836 62 ntBASIC2.46□□□□□ -2.02
SOX9P48436 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC2.46□□□□□ -2.02
SOX9P48436 RNU7-25P-201ENST00000516544 62 ntBASIC2.46□□□□□ -2.02
SOX9P48436 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC2.46□□□□□ -2.02
SOX9P48436 AC134878.1-201ENST00000619901 243 ntBASIC2.46□□□□□ -2.02
SOX9P48436 SNORD115-28-201ENST00000363931 81 ntBASIC2.45□□□□□ -2.02
SOX9P48436 RNA5SP456-201ENST00000364002 114 ntBASIC2.45□□□□□ -2.02
SOX9P48436 MIR518F-201ENST00000384973 87 ntBASIC2.45□□□□□ -2.02
SOX9P48436 AL606753.1-201ENST00000427435 87 ntBASIC2.45□□□□□ -2.02
SOX9P48436 AL356320.1-201ENST00000429616 163 ntBASIC2.45□□□□□ -2.02
SOX9P48436 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.45□□□□□ -2.02
SOX9P48436 MIR1273D-201ENST00000577266 86 ntBASIC2.45□□□□□ -2.02
SOX9P48436 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC2.45□□□□□ -2.02
SOX9P48436 AC011603.4-201ENST00000611325 277 ntBASIC2.45□□□□□ -2.02
SOX9P48436 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.44□□□□□ -2.02
SOX9P48436 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.44□□□□□ -2.02
SOX9P48436 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.44□□□□□ -2.02
SOX9P48436 RNU6-414P-201ENST00000363705 104 ntBASIC2.44□□□□□ -2.02
SOX9P48436 MIR539-201ENST00000365690 78 ntBASIC2.44□□□□□ -2.02
SOX9P48436 Y_RNA.410-201ENST00000383992 113 ntBASIC2.44□□□□□ -2.02
SOX9P48436 Y_RNA.547-201ENST00000384654 119 ntBASIC2.44□□□□□ -2.02
SOX9P48436 MIR660-201ENST00000385235 97 ntBASIC2.44□□□□□ -2.02
SOX9P48436 Y_RNA.586-201ENST00000391146 98 ntBASIC2.44□□□□□ -2.02
SOX9P48436 AL445646.1-201ENST00000431784 216 ntBASIC2.44□□□□□ -2.02
SOX9P48436 AL591806.2-201ENST00000433122 173 ntBASIC2.44□□□□□ -2.02
SOX9P48436 SNRPGP14-201ENST00000435400 219 ntBASIC2.44□□□□□ -2.02
SOX9P48436 RPL23AP6-201ENST00000446637 472 ntBASIC2.44□□□□□ -2.02
SOX9P48436 MIR1291-201ENST00000627649 87 ntBASIC2.44□□□□□ -2.02
SOX9P48436 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.43□□□□□ -2.02
SOX9P48436 MIR424-201ENST00000362227 98 ntBASIC2.43□□□□□ -2.02
SOX9P48436 Y_RNA.251-201ENST00000364551 99 ntBASIC2.43□□□□□ -2.02
SOX9P48436 RNU6-915P-201ENST00000364943 103 ntBASIC2.43□□□□□ -2.02
SOX9P48436 RNU6-81P-201ENST00000365608 104 ntBASIC2.43□□□□□ -2.02
SOX9P48436 RNA5SP181-201ENST00000410246 98 ntBASIC2.43□□□□□ -2.02
SOX9P48436 MTND4LP9-201ENST00000427694 174 ntBASIC2.43□□□□□ -2.02
SOX9P48436 AC015922.2-201ENST00000435593 184 ntBASIC2.43□□□□□ -2.02
SOX9P48436 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC2.43□□□□□ -2.02
SOX9P48436 MTATP6P21-201ENST00000440681 189 ntBASIC2.43□□□□□ -2.02
SOX9P48436 snoU13.23-201ENST00000458863 104 ntBASIC2.43□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 168.8 ms