Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 RNU6-804P-201ENST00000384286 107 ntBASIC1.74□□□□□ -2.13
SOX2P48431 Y_RNA.486-201ENST00000384398 107 ntBASIC1.74□□□□□ -2.13
SOX2P48431 RNU4-53P-201ENST00000410828 140 ntBASIC1.74□□□□□ -2.13
SOX2P48431 AC114811.1-201ENST00000507207 168 ntBASIC1.74□□□□□ -2.13
SOX2P48431 RNU7-12P-201ENST00000516030 62 ntBASIC1.74□□□□□ -2.13
SOX2P48431 RNU6-1116P-201ENST00000517269 99 ntBASIC1.74□□□□□ -2.13
SOX2P48431 AL513423.1-201ENST00000621695 132 ntBASIC1.74□□□□□ -2.13
SOX2P48431 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.73□□□□□ -2.13
SOX2P48431 Y_RNA.91-201ENST00000363042 107 ntBASIC1.73□□□□□ -2.13
SOX2P48431 MIR891A-201ENST00000401237 79 ntBASIC1.73□□□□□ -2.13
SOX2P48431 AL023284.1-201ENST00000403956 276 ntBASIC1.73□□□□□ -2.13
SOX2P48431 AC099513.1-201ENST00000490423 301 ntBASIC1.73□□□□□ -2.13
SOX2P48431 RN7SL274P-201ENST00000492268 272 ntBASIC1.73□□□□□ -2.13
SOX2P48431 IGKV3-31-201ENST00000523109 329 ntBASIC1.73□□□□□ -2.13
SOX2P48431 MIR4299-201ENST00000577899 72 ntBASIC1.73□□□□□ -2.13
SOX2P48431 MIR5089-201ENST00000580047 84 ntBASIC1.73□□□□□ -2.13
SOX2P48431 MIR378D2-201ENST00000580636 98 ntBASIC1.73□□□□□ -2.13
SOX2P48431 AC097639.2-201ENST00000603159 172 ntBASIC1.73□□□□□ -2.13
SOX2P48431 AC021753.1-201ENST00000635724 168 ntBASIC1.73□□□□□ -2.13
SOX2P48431 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.73□□□□□ -2.13
SOX2P48431 MIR449A-201ENST00000362113 91 ntBASIC1.72□□□□□ -2.13
SOX2P48431 RNU6-833P-201ENST00000363486 107 ntBASIC1.72□□□□□ -2.13
SOX2P48431 RNU6-414P-201ENST00000363705 104 ntBASIC1.72□□□□□ -2.13
SOX2P48431 RNU6-449P-201ENST00000383914 107 ntBASIC1.72□□□□□ -2.13
SOX2P48431 SNORD116-18-201ENST00000383961 92 ntBASIC1.72□□□□□ -2.13
SOX2P48431 Y_RNA.521-201ENST00000384560 114 ntBASIC1.72□□□□□ -2.13
SOX2P48431 Y_RNA.580-201ENST00000391004 95 ntBASIC1.72□□□□□ -2.13
SOX2P48431 SUMO2P12-201ENST00000405924 140 ntBASIC1.72□□□□□ -2.13
SOX2P48431 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC1.72□□□□□ -2.13
SOX2P48431 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.72□□□□□ -2.13
SOX2P48431 PGBD4P5-201ENST00000445958 426 ntBASIC1.72□□□□□ -2.13
SOX2P48431 SNORD116-25-201ENST00000516517 92 ntBASIC1.72□□□□□ -2.13
SOX2P48431 RNU6-504P-201ENST00000516568 104 ntBASIC1.72□□□□□ -2.13
SOX2P48431 RNU7-121P-201ENST00000516604 62 ntBASIC1.72□□□□□ -2.13
SOX2P48431 AC022254.1-201ENST00000567857 235 ntBASIC1.72□□□□□ -2.13
SOX2P48431 MIR4713-201ENST00000582691 75 ntBASIC1.72□□□□□ -2.13
SOX2P48431 MIR6715A-201ENST00000615929 79 ntBASIC1.72□□□□□ -2.13
SOX2P48431 MTND1P7-201ENST00000632801 297 ntBASIC1.72□□□□□ -2.13
SOX2P48431 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.72□□□□□ -2.13
SOX2P48431 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.71□□□□□ -2.13
SOX2P48431 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC1.71□□□□□ -2.14
SOX2P48431 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC1.71□□□□□ -2.14
SOX2P48431 MIR424-201ENST00000362227 98 ntBASIC1.71□□□□□ -2.14
SOX2P48431 RNU6-661P-201ENST00000362409 107 ntBASIC1.71□□□□□ -2.14
SOX2P48431 Y_RNA.398-201ENST00000383952 99 ntBASIC1.71□□□□□ -2.14
SOX2P48431 SNORA67.3-201ENST00000384366 140 ntBASIC1.71□□□□□ -2.14
SOX2P48431 MIR660-201ENST00000385235 97 ntBASIC1.71□□□□□ -2.14
SOX2P48431 AC008413.1-201ENST00000511864 177 ntBASIC1.71□□□□□ -2.14
SOX2P48431 RNU6-255P-201ENST00000516957 105 ntBASIC1.71□□□□□ -2.14
SOX2P48431 uc_338.20-201ENST00000621563 178 ntBASIC1.71□□□□□ -2.14
SOX2P48431 SNORD3E-202ENST00000627253 216 ntBASIC1.71□□□□□ -2.14
SOX2P48431 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC1.71□□□□□ -2.14
SOX2P48431 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC1.7□□□□□ -2.14
SOX2P48431 RNU6-1123P-201ENST00000362347 106 ntBASIC1.7□□□□□ -2.14
SOX2P48431 Y_RNA.170-201ENST00000363746 110 ntBASIC1.7□□□□□ -2.14
SOX2P48431 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.7□□□□□ -2.14
SOX2P48431 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.7□□□□□ -2.14
SOX2P48431 RNA5SP489-201ENST00000410986 109 ntBASIC1.7□□□□□ -2.14
SOX2P48431 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC1.7□□□□□ -2.14
SOX2P48431 SNRPGP13-201ENST00000442212 177 ntBASIC1.7□□□□□ -2.14
SOX2P48431 ICE2P2-201ENST00000483823 2787 ntBASIC1.7□□□□□ -2.14
SOX2P48431 Y_RNA.666-201ENST00000516187 112 ntBASIC1.7□□□□□ -2.14
SOX2P48431 DNAJC19P2-201ENST00000593340 302 ntBASIC1.7□□□□□ -2.14
SOX2P48431 AC006441.5-201ENST00000612680 209 ntBASIC1.7□□□□□ -2.14
SOX2P48431 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.7□□□□□ -2.14
SOX2P48431 RNU4-82P-201ENST00000362443 140 ntBASIC1.69□□□□□ -2.14
SOX2P48431 Y_RNA.66-201ENST00000362862 102 ntBASIC1.69□□□□□ -2.14
SOX2P48431 RNU6-268P-201ENST00000364174 107 ntBASIC1.69□□□□□ -2.14
SOX2P48431 RNA5SP126-201ENST00000365092 109 ntBASIC1.69□□□□□ -2.14
SOX2P48431 RNU6-1130P-201ENST00000365434 107 ntBASIC1.69□□□□□ -2.14
SOX2P48431 SNORD24-201ENST00000383884 75 ntBASIC1.69□□□□□ -2.14
SOX2P48431 Y_RNA.393-201ENST00000383936 102 ntBASIC1.69□□□□□ -2.14
SOX2P48431 SNORA64-201ENST00000384674 134 ntBASIC1.69□□□□□ -2.14
SOX2P48431 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC1.69□□□□□ -2.14
SOX2P48431 RN7SKP192-201ENST00000411291 327 ntBASIC1.69□□□□□ -2.14
SOX2P48431 UBL5P3-201ENST00000475112 231 ntBASIC1.69□□□□□ -2.14
SOX2P48431 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC1.69□□□□□ -2.14
SOX2P48431 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.69□□□□□ -2.14
SOX2P48431 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.68□□□□□ -2.14
SOX2P48431 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.68□□□□□ -2.14
SOX2P48431 RNU6-978P-201ENST00000364371 103 ntBASIC1.68□□□□□ -2.14
SOX2P48431 SNORA25.7-201ENST00000364375 127 ntBASIC1.68□□□□□ -2.14
SOX2P48431 RNU6-203P-201ENST00000384038 104 ntBASIC1.68□□□□□ -2.14
SOX2P48431 RNU6-439P-201ENST00000384188 106 ntBASIC1.68□□□□□ -2.14
SOX2P48431 SNORD38C-201ENST00000384381 69 ntBASIC1.68□□□□□ -2.14
SOX2P48431 RNU6-768P-201ENST00000384683 107 ntBASIC1.68□□□□□ -2.14
SOX2P48431 MIR452-201ENST00000385020 85 ntBASIC1.68□□□□□ -2.14
SOX2P48431 AL603908.1-201ENST00000406098 201 ntBASIC1.68□□□□□ -2.14
SOX2P48431 MIR548M-201ENST00000408260 86 ntBASIC1.68□□□□□ -2.14
SOX2P48431 MIR1267-201ENST00000408723 78 ntBASIC1.68□□□□□ -2.14
SOX2P48431 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.68□□□□□ -2.14
SOX2P48431 SNRPGP14-201ENST00000435400 219 ntBASIC1.68□□□□□ -2.14
SOX2P48431 JTBP1-201ENST00000441314 247 ntBASIC1.68□□□□□ -2.14
SOX2P48431 MTND5P41-201ENST00000517498 206 ntBASIC1.68□□□□□ -2.14
SOX2P48431 MIR4778-201ENST00000577635 80 ntBASIC1.68□□□□□ -2.14
SOX2P48431 MIR3646-201ENST00000578301 84 ntBASIC1.68□□□□□ -2.14
SOX2P48431 Y_RNA.778-201ENST00000620203 90 ntBASIC1.68□□□□□ -2.14
SOX2P48431 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.68□□□□□ -2.14
SOX2P48431 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
SOX2P48431 RNU6-888P-201ENST00000363010 101 ntBASIC1.67□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms