Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AC008507.4-201ENST00000585464 127 ntBASIC1.61□□□□□ -2.15
PTPN9P43378 AL391903.3-201ENST00000612158 163 ntBASIC1.61□□□□□ -2.15
PTPN9P43378 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.61□□□□□ -2.15
PTPN9P43378 RNU6-1138P-201ENST00000365359 106 ntBASIC1.6□□□□□ -2.15
PTPN9P43378 RNU4-17P-201ENST00000365598 141 ntBASIC1.6□□□□□ -2.15
PTPN9P43378 Y_RNA.552-201ENST00000384665 112 ntBASIC1.6□□□□□ -2.15
PTPN9P43378 MIR517C-201ENST00000385103 95 ntBASIC1.6□□□□□ -2.15
PTPN9P43378 SNORA67.5-201ENST00000391036 107 ntBASIC1.6□□□□□ -2.15
PTPN9P43378 RNU1-78P-201ENST00000391248 165 ntBASIC1.6□□□□□ -2.15
PTPN9P43378 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.6□□□□□ -2.15
PTPN9P43378 Y_RNA.626-201ENST00000411288 95 ntBASIC1.6□□□□□ -2.15
PTPN9P43378 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC1.6□□□□□ -2.15
PTPN9P43378 RN7SKP164-201ENST00000516138 266 ntBASIC1.6□□□□□ -2.15
PTPN9P43378 SNORD45.4-201ENST00000516629 73 ntBASIC1.6□□□□□ -2.15
PTPN9P43378 uc_338.4-201ENST00000616635 176 ntBASIC1.6□□□□□ -2.15
PTPN9P43378 AL442644.1-201ENST00000454390 3105 ntBASIC1.6□□□□□ -2.15
PTPN9P43378 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.59□□□□□ -2.15
PTPN9P43378 RNU6-1084P-201ENST00000362498 107 ntBASIC1.59□□□□□ -2.15
PTPN9P43378 Y_RNA.24-201ENST00000362508 103 ntBASIC1.59□□□□□ -2.15
PTPN9P43378 RNU6-199P-201ENST00000362954 107 ntBASIC1.59□□□□□ -2.15
PTPN9P43378 RNU1-17P-201ENST00000363022 152 ntBASIC1.59□□□□□ -2.15
PTPN9P43378 Y_RNA.229-201ENST00000364347 113 ntBASIC1.59□□□□□ -2.15
PTPN9P43378 SNORD50B-201ENST00000364995 70 ntBASIC1.59□□□□□ -2.15
PTPN9P43378 MIR616-201ENST00000385293 97 ntBASIC1.59□□□□□ -2.15
PTPN9P43378 RNU6-482P-201ENST00000391068 107 ntBASIC1.59□□□□□ -2.15
PTPN9P43378 RNU6-847P-201ENST00000411115 108 ntBASIC1.59□□□□□ -2.15
PTPN9P43378 MLLT10P1-201ENST00000418346 262 ntBASIC1.59□□□□□ -2.15
PTPN9P43378 AC005908.1-201ENST00000468701 347 ntBASIC1.59□□□□□ -2.15
PTPN9P43378 AC114811.1-201ENST00000507207 168 ntBASIC1.59□□□□□ -2.15
PTPN9P43378 RNU6-970P-201ENST00000516312 107 ntBASIC1.59□□□□□ -2.15
PTPN9P43378 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.59□□□□□ -2.15
PTPN9P43378 MIR4662B-201ENST00000579498 81 ntBASIC1.59□□□□□ -2.15
PTPN9P43378 MIR4285-201ENST00000581001 85 ntBASIC1.59□□□□□ -2.15
PTPN9P43378 MIR4422-201ENST00000581938 83 ntBASIC1.59□□□□□ -2.15
PTPN9P43378 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.59□□□□□ -2.15
PTPN9P43378 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.58□□□□□ -2.16
PTPN9P43378 RNU6-103P-201ENST00000363686 107 ntBASIC1.58□□□□□ -2.16
PTPN9P43378 Y_RNA.200-201ENST00000364018 102 ntBASIC1.58□□□□□ -2.16
PTPN9P43378 Y_RNA.515-201ENST00000384535 112 ntBASIC1.58□□□□□ -2.16
PTPN9P43378 MIR452-201ENST00000385020 85 ntBASIC1.58□□□□□ -2.16
PTPN9P43378 RNU6-381P-201ENST00000391259 108 ntBASIC1.58□□□□□ -2.16
PTPN9P43378 MIR1323-201ENST00000408090 73 ntBASIC1.58□□□□□ -2.16
PTPN9P43378 MIR1298-201ENST00000408783 112 ntBASIC1.58□□□□□ -2.16
PTPN9P43378 RN7SKP51-201ENST00000410781 304 ntBASIC1.58□□□□□ -2.16
PTPN9P43378 RNU2-55P-201ENST00000411146 174 ntBASIC1.58□□□□□ -2.16
PTPN9P43378 AC245517.4-201ENST00000448601 281 ntBASIC1.58□□□□□ -2.16
PTPN9P43378 SNORD77.4-201ENST00000516158 81 ntBASIC1.58□□□□□ -2.16
PTPN9P43378 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.58□□□□□ -2.16
PTPN9P43378 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
PTPN9P43378 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC1.57□□□□□ -2.16
PTPN9P43378 SNORD14E-201ENST00000364009 85 ntBASIC1.57□□□□□ -2.16
PTPN9P43378 RNU4-10P-201ENST00000364383 140 ntBASIC1.57□□□□□ -2.16
PTPN9P43378 SNORD1A-201ENST00000364968 72 ntBASIC1.57□□□□□ -2.16
PTPN9P43378 RNU6-442P-201ENST00000383968 104 ntBASIC1.57□□□□□ -2.16
PTPN9P43378 MIR653-201ENST00000385279 96 ntBASIC1.57□□□□□ -2.16
PTPN9P43378 MIR320A-201ENST00000385302 82 ntBASIC1.57□□□□□ -2.16
PTPN9P43378 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC1.57□□□□□ -2.16
PTPN9P43378 HSPE1P24-201ENST00000450782 238 ntBASIC1.57□□□□□ -2.16
PTPN9P43378 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC1.57□□□□□ -2.16
PTPN9P43378 SNORD53B-201ENST00000577887 78 ntBASIC1.57□□□□□ -2.16
PTPN9P43378 Z83818.1-201ENST00000603584 150 ntBASIC1.57□□□□□ -2.16
PTPN9P43378 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC1.57□□□□□ -2.16
PTPN9P43378 AP000648.3-201ENST00000623539 4507 ntBASIC1.57□□□□□ -2.16
PTPN9P43378 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.57□□□□□ -2.16
PTPN9P43378 Y_RNA.199-201ENST00000364014 102 ntBASIC1.56□□□□□ -2.16
PTPN9P43378 RNU6-60P-201ENST00000364792 103 ntBASIC1.56□□□□□ -2.16
PTPN9P43378 SNORA2.2-201ENST00000365473 135 ntBASIC1.56□□□□□ -2.16
PTPN9P43378 RNA5SP259-201ENST00000365541 109 ntBASIC1.56□□□□□ -2.16
PTPN9P43378 RNU6-1228P-201ENST00000391014 107 ntBASIC1.56□□□□□ -2.16
PTPN9P43378 MIR1304-201ENST00000408243 91 ntBASIC1.56□□□□□ -2.16
PTPN9P43378 RNU6ATAC23P-201ENST00000408448 123 ntBASIC1.56□□□□□ -2.16
PTPN9P43378 PIGPP3-201ENST00000425307 415 ntBASIC1.56□□□□□ -2.16
PTPN9P43378 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC1.56□□□□□ -2.16
PTPN9P43378 RNU6-1116P-201ENST00000517269 99 ntBASIC1.56□□□□□ -2.16
PTPN9P43378 SUMO2P16-201ENST00000519475 264 ntBASIC1.56□□□□□ -2.16
PTPN9P43378 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC1.56□□□□□ -2.16
PTPN9P43378 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC1.56□□□□□ -2.16
PTPN9P43378 MIR411-201ENST00000362239 96 ntBASIC1.55□□□□□ -2.16
PTPN9P43378 Y_RNA.83-201ENST00000363005 113 ntBASIC1.55□□□□□ -2.16
PTPN9P43378 Y_RNA.121-201ENST00000363309 113 ntBASIC1.55□□□□□ -2.16
PTPN9P43378 snoU2_19.4-201ENST00000364329 80 ntBASIC1.55□□□□□ -2.16
PTPN9P43378 Y_RNA.435-201ENST00000384095 112 ntBASIC1.55□□□□□ -2.16
PTPN9P43378 MIR15B-201ENST00000385045 98 ntBASIC1.55□□□□□ -2.16
PTPN9P43378 SNRPGP14-201ENST00000435400 219 ntBASIC1.55□□□□□ -2.16
PTPN9P43378 AC027119.1-201ENST00000440877 241 ntBASIC1.55□□□□□ -2.16
PTPN9P43378 AC079140.2-201ENST00000506193 142 ntBASIC1.55□□□□□ -2.16
PTPN9P43378 Y_RNA.700-201ENST00000516806 100 ntBASIC1.55□□□□□ -2.16
PTPN9P43378 AC090049.2-201ENST00000550377 109 ntBASIC1.55□□□□□ -2.16
PTPN9P43378 MIR4778-201ENST00000577635 80 ntBASIC1.55□□□□□ -2.16
PTPN9P43378 MIR4769-201ENST00000584126 77 ntBASIC1.55□□□□□ -2.16
PTPN9P43378 AL513534.2-201ENST00000603836 250 ntBASIC1.55□□□□□ -2.16
PTPN9P43378 AC006441.5-201ENST00000612680 209 ntBASIC1.55□□□□□ -2.16
PTPN9P43378 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC1.55□□□□□ -2.16
PTPN9P43378 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.54□□□□□ -2.16
PTPN9P43378 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.54□□□□□ -2.16
PTPN9P43378 RNA5SP99-201ENST00000364020 114 ntBASIC1.54□□□□□ -2.16
PTPN9P43378 Y_RNA.572-201ENST00000384757 98 ntBASIC1.54□□□□□ -2.16
PTPN9P43378 MIR802-201ENST00000390235 94 ntBASIC1.54□□□□□ -2.16
PTPN9P43378 SNORA67.6-201ENST00000391093 99 ntBASIC1.54□□□□□ -2.16
PTPN9P43378 AC245047.8-201ENST00000456455 284 ntBASIC1.54□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 85.8 ms