Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC1.86□□□□□ -2.11
CIITAP33076 AC108706.1-201ENST00000611053 297 ntBASIC1.86□□□□□ -2.11
CIITAP33076 AL591926.4-201ENST00000616895 298 ntBASIC1.86□□□□□ -2.11
CIITAP33076 U6.106-201ENST00000636360 105 ntBASIC1.86□□□□□ -2.11
CIITAP33076 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.86□□□□□ -2.11
CIITAP33076 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
CIITAP33076 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
CIITAP33076 Y_RNA.180-201ENST00000363867 113 ntBASIC1.85□□□□□ -2.11
CIITAP33076 Y_RNA.226-201ENST00000364337 114 ntBASIC1.85□□□□□ -2.11
CIITAP33076 RNU6-440P-201ENST00000390882 105 ntBASIC1.85□□□□□ -2.11
CIITAP33076 SNORD13-201ENST00000459299 104 ntBASIC1.85□□□□□ -2.11
CIITAP33076 AP002004.2-201ENST00000531656 154 ntBASIC1.85□□□□□ -2.11
CIITAP33076 MRPS18CP4-201ENST00000535821 231 ntBASIC1.85□□□□□ -2.11
CIITAP33076 RPL23AP91-201ENST00000569211 455 ntBASIC1.85□□□□□ -2.11
CIITAP33076 MIR3122-201ENST00000577243 73 ntBASIC1.85□□□□□ -2.11
CIITAP33076 MIR4744-201ENST00000581563 82 ntBASIC1.85□□□□□ -2.11
CIITAP33076 AL391903.3-201ENST00000612158 163 ntBASIC1.85□□□□□ -2.11
CIITAP33076 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
CIITAP33076 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.11
CIITAP33076 Y_RNA.75-201ENST00000362927 97 ntBASIC1.84□□□□□ -2.11
CIITAP33076 MIR562-201ENST00000384894 95 ntBASIC1.84□□□□□ -2.11
CIITAP33076 MIR30A-201ENST00000385092 71 ntBASIC1.84□□□□□ -2.11
CIITAP33076 RNU6-578P-201ENST00000390980 103 ntBASIC1.84□□□□□ -2.11
CIITAP33076 RNA5SP496-201ENST00000391240 109 ntBASIC1.84□□□□□ -2.11
CIITAP33076 MIR1287-201ENST00000408492 90 ntBASIC1.84□□□□□ -2.11
CIITAP33076 Y_RNA.621-201ENST00000411065 96 ntBASIC1.84□□□□□ -2.11
CIITAP33076 RNU5E-9P-201ENST00000411164 104 ntBASIC1.84□□□□□ -2.11
CIITAP33076 AL049830.1-201ENST00000468034 425 ntBASIC1.84□□□□□ -2.11
CIITAP33076 HMGN1P7-201ENST00000491722 313 ntBASIC1.84□□□□□ -2.11
CIITAP33076 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC1.84□□□□□ -2.12
CIITAP33076 RNU6-103P-201ENST00000363686 107 ntBASIC1.83□□□□□ -2.12
CIITAP33076 RNU6-209P-201ENST00000384118 107 ntBASIC1.83□□□□□ -2.12
CIITAP33076 RNU4-70P-201ENST00000384579 139 ntBASIC1.83□□□□□ -2.12
CIITAP33076 MIR520A-201ENST00000384862 85 ntBASIC1.83□□□□□ -2.12
CIITAP33076 RNU11-5P-201ENST00000391216 129 ntBASIC1.83□□□□□ -2.12
CIITAP33076 AL606845.1-201ENST00000404881 255 ntBASIC1.83□□□□□ -2.12
CIITAP33076 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC1.83□□□□□ -2.12
CIITAP33076 SNRPGP8-201ENST00000454064 226 ntBASIC1.83□□□□□ -2.12
CIITAP33076 OR9P1P-201ENST00000496431 281 ntBASIC1.83□□□□□ -2.12
CIITAP33076 MIR4498-201ENST00000577599 66 ntBASIC1.83□□□□□ -2.12
CIITAP33076 AC103810.8-201ENST00000607347 118 ntBASIC1.83□□□□□ -2.12
CIITAP33076 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.83□□□□□ -2.12
CIITAP33076 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.82□□□□□ -2.12
CIITAP33076 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.82□□□□□ -2.12
CIITAP33076 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.82□□□□□ -2.12
CIITAP33076 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.82□□□□□ -2.12
CIITAP33076 Y_RNA.182-201ENST00000363880 111 ntBASIC1.82□□□□□ -2.12
CIITAP33076 RNU6-275P-201ENST00000364910 107 ntBASIC1.82□□□□□ -2.12
CIITAP33076 MIR522-201ENST00000385071 87 ntBASIC1.82□□□□□ -2.12
CIITAP33076 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.82□□□□□ -2.12
CIITAP33076 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.82□□□□□ -2.12
CIITAP33076 SNORA67.5-201ENST00000391036 107 ntBASIC1.82□□□□□ -2.12
CIITAP33076 MIR934-201ENST00000401241 83 ntBASIC1.82□□□□□ -2.12
CIITAP33076 RNU6-1007P-201ENST00000516586 107 ntBASIC1.82□□□□□ -2.12
CIITAP33076 RNA5SP481-201ENST00000516814 122 ntBASIC1.82□□□□□ -2.12
CIITAP33076 SNORA31.17-201ENST00000516953 127 ntBASIC1.82□□□□□ -2.12
CIITAP33076 AC109810.1-201ENST00000534066 224 ntBASIC1.82□□□□□ -2.12
CIITAP33076 MIR4762-201ENST00000585261 75 ntBASIC1.82□□□□□ -2.12
CIITAP33076 AL049861.1-201ENST00000603130 150 ntBASIC1.82□□□□□ -2.12
CIITAP33076 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.82□□□□□ -2.12
CIITAP33076 MIRLET7C-201ENST00000362160 84 ntBASIC1.81□□□□□ -2.12
CIITAP33076 Y_RNA.270-201ENST00000364693 104 ntBASIC1.81□□□□□ -2.12
CIITAP33076 RNU6-484P-201ENST00000384016 107 ntBASIC1.81□□□□□ -2.12
CIITAP33076 Y_RNA.441-201ENST00000384123 112 ntBASIC1.81□□□□□ -2.12
CIITAP33076 RNU6-1228P-201ENST00000391014 107 ntBASIC1.81□□□□□ -2.12
CIITAP33076 SNORA17.3-201ENST00000391159 129 ntBASIC1.81□□□□□ -2.12
CIITAP33076 Y_RNA.587-201ENST00000391210 103 ntBASIC1.81□□□□□ -2.12
CIITAP33076 RNU6-1135P-201ENST00000411083 103 ntBASIC1.81□□□□□ -2.12
CIITAP33076 SNRPGP10-201ENST00000432323 225 ntBASIC1.81□□□□□ -2.12
CIITAP33076 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.81□□□□□ -2.12
CIITAP33076 AC099513.1-201ENST00000490423 301 ntBASIC1.81□□□□□ -2.12
CIITAP33076 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC1.81□□□□□ -2.12
CIITAP33076 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC1.81□□□□□ -2.12
CIITAP33076 MIR2681-201ENST00000581814 105 ntBASIC1.81□□□□□ -2.12
CIITAP33076 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.81□□□□□ -2.12
CIITAP33076 uc_338.4-201ENST00000616635 176 ntBASIC1.81□□□□□ -2.12
CIITAP33076 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.81□□□□□ -2.12
CIITAP33076 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
CIITAP33076 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
CIITAP33076 MIR126-201ENST00000362291 85 ntBASIC1.8□□□□□ -2.12
CIITAP33076 RNU6-414P-201ENST00000363705 104 ntBASIC1.8□□□□□ -2.12
CIITAP33076 U8.5-201ENST00000364528 136 ntBASIC1.8□□□□□ -2.12
CIITAP33076 RNY3P5-201ENST00000384127 102 ntBASIC1.8□□□□□ -2.12
CIITAP33076 Y_RNA.797-201ENST00000515977 94 ntBASIC1.8□□□□□ -2.12
CIITAP33076 Y_RNA.662-201ENST00000516028 97 ntBASIC1.8□□□□□ -2.12
CIITAP33076 SNORD77.4-201ENST00000516158 81 ntBASIC1.8□□□□□ -2.12
CIITAP33076 RNU2-56P-201ENST00000516826 190 ntBASIC1.8□□□□□ -2.12
CIITAP33076 MIR8074-201ENST00000615081 81 ntBASIC1.8□□□□□ -2.12
CIITAP33076 MIR7111-201ENST00000619751 72 ntBASIC1.8□□□□□ -2.12
CIITAP33076 Y_RNA.23-201ENST00000362496 106 ntBASIC1.79□□□□□ -2.12
CIITAP33076 RNU6-312P-201ENST00000364629 107 ntBASIC1.79□□□□□ -2.12
CIITAP33076 RNU2-7P-201ENST00000410794 178 ntBASIC1.79□□□□□ -2.12
CIITAP33076 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.79□□□□□ -2.12
CIITAP33076 SNORD45.3-201ENST00000363836 72 ntBASIC1.78□□□□□ -2.12
CIITAP33076 RNU6-457P-201ENST00000363999 107 ntBASIC1.78□□□□□ -2.12
CIITAP33076 SNORD50B-201ENST00000364995 70 ntBASIC1.78□□□□□ -2.12
CIITAP33076 RNU6-1031P-201ENST00000384773 107 ntBASIC1.78□□□□□ -2.12
CIITAP33076 RNA5SP482-201ENST00000391269 118 ntBASIC1.78□□□□□ -2.12
CIITAP33076 RNU4-43P-201ENST00000410628 137 ntBASIC1.78□□□□□ -2.12
CIITAP33076 RNU6-394P-201ENST00000410735 107 ntBASIC1.78□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 102.5 ms