Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AC108706.1-201ENST00000611053 297 ntBASIC2.09□□□□□ -2.07
SMARCA1P28370 JPX_2.1-201ENST00000614161 69 ntBASIC2.09□□□□□ -2.07
SMARCA1P28370 uc_338.4-201ENST00000616635 176 ntBASIC2.09□□□□□ -2.07
SMARCA1P28370 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.09□□□□□ -2.08
SMARCA1P28370 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC2.08□□□□□ -2.08
SMARCA1P28370 Y_RNA.164-201ENST00000363709 102 ntBASIC2.08□□□□□ -2.08
SMARCA1P28370 Y_RNA.240-201ENST00000364469 95 ntBASIC2.08□□□□□ -2.08
SMARCA1P28370 RNU6-1031P-201ENST00000384773 107 ntBASIC2.08□□□□□ -2.08
SMARCA1P28370 MIR764-201ENST00000390811 85 ntBASIC2.08□□□□□ -2.08
SMARCA1P28370 RNU6-1228P-201ENST00000391014 107 ntBASIC2.08□□□□□ -2.08
SMARCA1P28370 FTH1P12-201ENST00000432137 551 ntBASIC2.08□□□□□ -2.08
SMARCA1P28370 SNRPGP8-201ENST00000454064 226 ntBASIC2.08□□□□□ -2.08
SMARCA1P28370 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC2.08□□□□□ -2.08
SMARCA1P28370 Y_RNA.797-201ENST00000515977 94 ntBASIC2.08□□□□□ -2.08
SMARCA1P28370 RNA5SP481-201ENST00000516814 122 ntBASIC2.08□□□□□ -2.08
SMARCA1P28370 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC2.08□□□□□ -2.08
SMARCA1P28370 MIR4762-201ENST00000585261 75 ntBASIC2.08□□□□□ -2.08
SMARCA1P28370 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC2.07□□□□□ -2.08
SMARCA1P28370 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
SMARCA1P28370 Y_RNA.75-201ENST00000362927 97 ntBASIC2.07□□□□□ -2.08
SMARCA1P28370 Y_RNA.270-201ENST00000364693 104 ntBASIC2.07□□□□□ -2.08
SMARCA1P28370 AC003989.2-201ENST00000440224 169 ntBASIC2.07□□□□□ -2.08
SMARCA1P28370 AC109810.1-201ENST00000534066 224 ntBASIC2.07□□□□□ -2.08
SMARCA1P28370 MRPS18CP4-201ENST00000535821 231 ntBASIC2.07□□□□□ -2.08
SMARCA1P28370 AC103810.8-201ENST00000607347 118 ntBASIC2.07□□□□□ -2.08
SMARCA1P28370 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC2.07□□□□□ -2.08
SMARCA1P28370 MIRLET7C-201ENST00000362160 84 ntBASIC2.06□□□□□ -2.08
SMARCA1P28370 U8.5-201ENST00000364528 136 ntBASIC2.06□□□□□ -2.08
SMARCA1P28370 RNU6-275P-201ENST00000364910 107 ntBASIC2.06□□□□□ -2.08
SMARCA1P28370 RNY3P5-201ENST00000384127 102 ntBASIC2.06□□□□□ -2.08
SMARCA1P28370 RNU6-950P-201ENST00000384651 107 ntBASIC2.06□□□□□ -2.08
SMARCA1P28370 Y_RNA.555-201ENST00000384673 110 ntBASIC2.06□□□□□ -2.08
SMARCA1P28370 5S_rRNA.2-201ENST00000391293 112 ntBASIC2.06□□□□□ -2.08
SMARCA1P28370 AL034345.1-201ENST00000407768 123 ntBASIC2.06□□□□□ -2.08
SMARCA1P28370 Y_RNA.622-201ENST00000411091 108 ntBASIC2.06□□□□□ -2.08
SMARCA1P28370 CALM2P4-201ENST00000430810 426 ntBASIC2.06□□□□□ -2.08
SMARCA1P28370 snoU13.27-201ENST00000459278 104 ntBASIC2.06□□□□□ -2.08
SMARCA1P28370 AC099513.1-201ENST00000490423 301 ntBASIC2.06□□□□□ -2.08
SMARCA1P28370 RNU6-250P-201ENST00000516958 103 ntBASIC2.06□□□□□ -2.08
SMARCA1P28370 RNU6-1116P-201ENST00000517269 99 ntBASIC2.06□□□□□ -2.08
SMARCA1P28370 MIR3683-201ENST00000580847 82 ntBASIC2.06□□□□□ -2.08
SMARCA1P28370 SNORA28-201ENST00000606769 126 ntBASIC2.06□□□□□ -2.08
SMARCA1P28370 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC2.06□□□□□ -2.08
SMARCA1P28370 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC2.06□□□□□ -2.08
SMARCA1P28370 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC2.05□□□□□ -2.08
SMARCA1P28370 RNU6-661P-201ENST00000362409 107 ntBASIC2.05□□□□□ -2.08
SMARCA1P28370 SNORD50B-201ENST00000364995 70 ntBASIC2.05□□□□□ -2.08
SMARCA1P28370 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC2.05□□□□□ -2.08
SMARCA1P28370 U8.16-201ENST00000391279 133 ntBASIC2.05□□□□□ -2.08
SMARCA1P28370 RPL31P63-201ENST00000422565 375 ntBASIC2.05□□□□□ -2.08
SMARCA1P28370 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC2.05□□□□□ -2.08
SMARCA1P28370 AL603825.1-201ENST00000438481 80 ntBASIC2.05□□□□□ -2.08
SMARCA1P28370 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC2.05□□□□□ -2.08
SMARCA1P28370 HMGN2P23-201ENST00000456759 269 ntBASIC2.05□□□□□ -2.08
SMARCA1P28370 RN7SL274P-201ENST00000492268 272 ntBASIC2.05□□□□□ -2.08
SMARCA1P28370 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC2.05□□□□□ -2.08
SMARCA1P28370 SNORD77.4-201ENST00000516158 81 ntBASIC2.05□□□□□ -2.08
SMARCA1P28370 RNU7-149P-201ENST00000516739 59 ntBASIC2.05□□□□□ -2.08
SMARCA1P28370 MIR4419B-201ENST00000577260 68 ntBASIC2.05□□□□□ -2.08
SMARCA1P28370 MIR4709-201ENST00000577272 72 ntBASIC2.05□□□□□ -2.08
SMARCA1P28370 AC021506.2-201ENST00000612354 169 ntBASIC2.05□□□□□ -2.08
SMARCA1P28370 Y_RNA.140-201ENST00000363474 103 ntBASIC2.04□□□□□ -2.08
SMARCA1P28370 RNU6-209P-201ENST00000384118 107 ntBASIC2.04□□□□□ -2.08
SMARCA1P28370 RNU6ATAC3P-201ENST00000387974 126 ntBASIC2.04□□□□□ -2.08
SMARCA1P28370 RNU6-360P-201ENST00000390944 104 ntBASIC2.04□□□□□ -2.08
SMARCA1P28370 SNORD72-201ENST00000390994 80 ntBASIC2.04□□□□□ -2.08
SMARCA1P28370 RNU6-131P-201ENST00000391144 107 ntBASIC2.04□□□□□ -2.08
SMARCA1P28370 AL121914.1-201ENST00000450188 156 ntBASIC2.04□□□□□ -2.08
SMARCA1P28370 AC023449.1-201ENST00000454464 154 ntBASIC2.04□□□□□ -2.08
SMARCA1P28370 RNU7-34P-201ENST00000459394 64 ntBASIC2.04□□□□□ -2.08
SMARCA1P28370 Y_RNA.662-201ENST00000516028 97 ntBASIC2.04□□□□□ -2.08
SMARCA1P28370 RNA5SP168-201ENST00000516642 112 ntBASIC2.04□□□□□ -2.08
SMARCA1P28370 SNORA44.1-201ENST00000517031 108 ntBASIC2.04□□□□□ -2.08
SMARCA1P28370 AC008507.4-201ENST00000585464 127 ntBASIC2.04□□□□□ -2.08
SMARCA1P28370 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC2.04□□□□□ -2.08
SMARCA1P28370 Y_RNA.180-201ENST00000363867 113 ntBASIC2.03□□□□□ -2.08
SMARCA1P28370 RNU6-484P-201ENST00000384016 107 ntBASIC2.03□□□□□ -2.08
SMARCA1P28370 CYCSP49-201ENST00000420810 319 ntBASIC2.03□□□□□ -2.08
SMARCA1P28370 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC2.03□□□□□ -2.08
SMARCA1P28370 Pinc.1-201ENST00000616452 154 ntBASIC2.03□□□□□ -2.08
SMARCA1P28370 AC084768.2-201ENST00000622736 221 ntBASIC2.03□□□□□ -2.08
SMARCA1P28370 Y_RNA.23-201ENST00000362496 106 ntBASIC2.02□□□□□ -2.09
SMARCA1P28370 SNORD45.3-201ENST00000363836 72 ntBASIC2.02□□□□□ -2.09
SMARCA1P28370 RNU6-312P-201ENST00000364629 107 ntBASIC2.02□□□□□ -2.09
SMARCA1P28370 RNU6-1138P-201ENST00000365359 106 ntBASIC2.02□□□□□ -2.09
SMARCA1P28370 RNU6-728P-201ENST00000365375 104 ntBASIC2.02□□□□□ -2.09
SMARCA1P28370 RNU6-203P-201ENST00000384038 104 ntBASIC2.02□□□□□ -2.09
SMARCA1P28370 RNU6-439P-201ENST00000384188 106 ntBASIC2.02□□□□□ -2.09
SMARCA1P28370 RNU6-424P-201ENST00000384367 105 ntBASIC2.02□□□□□ -2.09
SMARCA1P28370 Y_RNA.486-201ENST00000384398 107 ntBASIC2.02□□□□□ -2.09
SMARCA1P28370 MIR15B-201ENST00000385045 98 ntBASIC2.02□□□□□ -2.09
SMARCA1P28370 RNU5E-9P-201ENST00000411164 104 ntBASIC2.02□□□□□ -2.09
SMARCA1P28370 SEPT7P4-201ENST00000437076 306 ntBASIC2.02□□□□□ -2.09
SMARCA1P28370 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC2.02□□□□□ -2.09
SMARCA1P28370 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC2.02□□□□□ -2.09
SMARCA1P28370 Y_RNA.441-201ENST00000384123 112 ntBASIC2.01□□□□□ -2.09
SMARCA1P28370 RNU2-55P-201ENST00000411146 174 ntBASIC2.01□□□□□ -2.09
SMARCA1P28370 AC114811.1-201ENST00000507207 168 ntBASIC2.01□□□□□ -2.09
SMARCA1P28370 AC108729.3-201ENST00000513484 108 ntBASIC2.01□□□□□ -2.09
SMARCA1P28370 SNORD45.4-201ENST00000516629 73 ntBASIC2.01□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 219.2 ms