Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC2.23□□□□□ -2.05
HLA-DOAP06340 HMGN1P7-201ENST00000491722 313 ntBASIC2.23□□□□□ -2.05
HLA-DOAP06340 OR9P1P-201ENST00000496431 281 ntBASIC2.23□□□□□ -2.05
HLA-DOAP06340 AP001328.1-201ENST00000528550 176 ntBASIC2.23□□□□□ -2.05
HLA-DOAP06340 AC007751.1-201ENST00000529260 376 ntBASIC2.23□□□□□ -2.05
HLA-DOAP06340 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC2.23□□□□□ -2.05
HLA-DOAP06340 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC2.23□□□□□ -2.05
HLA-DOAP06340 AC022217.4-201ENST00000604389 163 ntBASIC2.23□□□□□ -2.05
HLA-DOAP06340 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC2.23□□□□□ -2.05
HLA-DOAP06340 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC2.23□□□□□ -2.05
HLA-DOAP06340 FO624990.1-201ENST00000636373 85 ntBASIC2.23□□□□□ -2.05
HLA-DOAP06340 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
HLA-DOAP06340 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC2.22□□□□□ -2.05
HLA-DOAP06340 Y_RNA.66-201ENST00000362862 102 ntBASIC2.22□□□□□ -2.05
HLA-DOAP06340 Y_RNA.127-201ENST00000363386 109 ntBASIC2.22□□□□□ -2.05
HLA-DOAP06340 RNA5SP37-201ENST00000365420 130 ntBASIC2.22□□□□□ -2.05
HLA-DOAP06340 RNU1-109P-201ENST00000383960 147 ntBASIC2.22□□□□□ -2.05
HLA-DOAP06340 SNORA1-201ENST00000384107 130 ntBASIC2.22□□□□□ -2.05
HLA-DOAP06340 SNORA80E-201ENST00000384744 137 ntBASIC2.22□□□□□ -2.05
HLA-DOAP06340 RNA5SP109-201ENST00000391010 116 ntBASIC2.22□□□□□ -2.05
HLA-DOAP06340 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC2.22□□□□□ -2.05
HLA-DOAP06340 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC2.22□□□□□ -2.05
HLA-DOAP06340 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC2.22□□□□□ -2.05
HLA-DOAP06340 RNU6ATAC12P-201ENST00000516542 115 ntBASIC2.22□□□□□ -2.05
HLA-DOAP06340 RNU6-341P-201ENST00000516973 96 ntBASIC2.22□□□□□ -2.05
HLA-DOAP06340 RNU2-60P-201ENST00000517290 128 ntBASIC2.22□□□□□ -2.05
HLA-DOAP06340 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
HLA-DOAP06340 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC2.22□□□□□ -2.05
HLA-DOAP06340 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.21□□□□□ -2.06
HLA-DOAP06340 MIR126-201ENST00000362291 85 ntBASIC2.21□□□□□ -2.06
HLA-DOAP06340 SNORA3A-201ENST00000364113 130 ntBASIC2.21□□□□□ -2.06
HLA-DOAP06340 SNORD116-14-201ENST00000383894 92 ntBASIC2.21□□□□□ -2.06
HLA-DOAP06340 SNORD116-17-201ENST00000383929 92 ntBASIC2.21□□□□□ -2.06
HLA-DOAP06340 SNORD116-15-201ENST00000384445 92 ntBASIC2.21□□□□□ -2.06
HLA-DOAP06340 SNORD116-19-201ENST00000384729 92 ntBASIC2.21□□□□□ -2.06
HLA-DOAP06340 Y_RNA.584-201ENST00000391090 114 ntBASIC2.21□□□□□ -2.06
HLA-DOAP06340 MIR1283-2-201ENST00000408621 87 ntBASIC2.21□□□□□ -2.06
HLA-DOAP06340 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.21□□□□□ -2.06
HLA-DOAP06340 RPS26P45-201ENST00000471748 340 ntBASIC2.21□□□□□ -2.06
HLA-DOAP06340 Y_RNA.666-201ENST00000516187 112 ntBASIC2.21□□□□□ -2.06
HLA-DOAP06340 RNA5SP153-201ENST00000516498 76 ntBASIC2.21□□□□□ -2.06
HLA-DOAP06340 AC090142.3-201ENST00000519012 385 ntBASIC2.21□□□□□ -2.06
HLA-DOAP06340 AC097639.2-201ENST00000603159 172 ntBASIC2.21□□□□□ -2.06
HLA-DOAP06340 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC2.21□□□□□ -2.06
HLA-DOAP06340 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC2.21□□□□□ -2.06
HLA-DOAP06340 MTND5P32-201ENST00000560711 1802 ntBASIC2.21□□□□□ -2.06
HLA-DOAP06340 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC2.21□□□□□ -2.06
HLA-DOAP06340 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.06
HLA-DOAP06340 ICE2P2-201ENST00000483823 2787 ntBASIC2.2□□□□□ -2.06
HLA-DOAP06340 RNA5SP205-201ENST00000364653 136 ntBASIC2.2□□□□□ -2.06
HLA-DOAP06340 RNU6-1138P-201ENST00000365359 106 ntBASIC2.2□□□□□ -2.06
HLA-DOAP06340 SNORD61-201ENST00000384252 73 ntBASIC2.2□□□□□ -2.06
HLA-DOAP06340 MIR518A2-201ENST00000384966 87 ntBASIC2.2□□□□□ -2.06
HLA-DOAP06340 CST2P1-201ENST00000425770 87 ntBASIC2.2□□□□□ -2.06
HLA-DOAP06340 AC245047.4-201ENST00000433189 144 ntBASIC2.2□□□□□ -2.06
HLA-DOAP06340 AC008267.6-201ENST00000441664 139 ntBASIC2.2□□□□□ -2.06
HLA-DOAP06340 AC023449.1-201ENST00000454464 154 ntBASIC2.2□□□□□ -2.06
HLA-DOAP06340 RNA5SP137-201ENST00000516833 135 ntBASIC2.2□□□□□ -2.06
HLA-DOAP06340 RNU6-1270P-201ENST00000517128 108 ntBASIC2.2□□□□□ -2.06
HLA-DOAP06340 AL160236.1-201ENST00000556317 195 ntBASIC2.2□□□□□ -2.06
HLA-DOAP06340 MIR3129-201ENST00000581095 76 ntBASIC2.2□□□□□ -2.06
HLA-DOAP06340 AP001340.1-201ENST00000624405 217 ntBASIC2.2□□□□□ -2.06
HLA-DOAP06340 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC2.2□□□□□ -2.06
HLA-DOAP06340 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC2.19□□□□□ -2.06
HLA-DOAP06340 SNORD68-201ENST00000363214 84 ntBASIC2.19□□□□□ -2.06
HLA-DOAP06340 SNORA25.7-201ENST00000364375 127 ntBASIC2.19□□□□□ -2.06
HLA-DOAP06340 MIR29C-201ENST00000385231 88 ntBASIC2.19□□□□□ -2.06
HLA-DOAP06340 HMGN2P39-201ENST00000398005 273 ntBASIC2.19□□□□□ -2.06
HLA-DOAP06340 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC2.19□□□□□ -2.06
HLA-DOAP06340 RNU6-717P-201ENST00000459076 104 ntBASIC2.19□□□□□ -2.06
HLA-DOAP06340 AL049830.1-201ENST00000468034 425 ntBASIC2.19□□□□□ -2.06
HLA-DOAP06340 AC079804.2-201ENST00000490376 200 ntBASIC2.19□□□□□ -2.06
HLA-DOAP06340 AC090255.1-201ENST00000495779 349 ntBASIC2.19□□□□□ -2.06
HLA-DOAP06340 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC2.19□□□□□ -2.06
HLA-DOAP06340 RNA5SP458-201ENST00000516188 119 ntBASIC2.19□□□□□ -2.06
HLA-DOAP06340 MIR4446-201ENST00000578505 67 ntBASIC2.19□□□□□ -2.06
HLA-DOAP06340 MIR5094-201ENST00000578766 85 ntBASIC2.19□□□□□ -2.06
HLA-DOAP06340 AC008507.4-201ENST00000585464 127 ntBASIC2.19□□□□□ -2.06
HLA-DOAP06340 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC2.19□□□□□ -2.06
HLA-DOAP06340 5S_rRNA.11-201ENST00000618635 84 ntBASIC2.19□□□□□ -2.06
HLA-DOAP06340 TUG1_4.1-201ENST00000619464 181 ntBASIC2.19□□□□□ -2.06
HLA-DOAP06340 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC2.19□□□□□ -2.06
HLA-DOAP06340 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC2.18□□□□□ -2.06
HLA-DOAP06340 AL391516.1-201ENST00000554380 2449 ntBASIC2.18□□□□□ -2.06
HLA-DOAP06340 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC2.18□□□□□ -2.06
HLA-DOAP06340 RNU1-17P-201ENST00000363022 152 ntBASIC2.18□□□□□ -2.06
HLA-DOAP06340 RNU6-309P-201ENST00000364573 106 ntBASIC2.18□□□□□ -2.06
HLA-DOAP06340 SNORD20-201ENST00000384550 80 ntBASIC2.18□□□□□ -2.06
HLA-DOAP06340 MIR522-201ENST00000385071 87 ntBASIC2.18□□□□□ -2.06
HLA-DOAP06340 MIR9-3-201ENST00000385084 90 ntBASIC2.18□□□□□ -2.06
HLA-DOAP06340 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC2.18□□□□□ -2.06
HLA-DOAP06340 RNU4-57P-201ENST00000515980 135 ntBASIC2.18□□□□□ -2.06
HLA-DOAP06340 RNVU1-2-201ENST00000516326 135 ntBASIC2.18□□□□□ -2.06
HLA-DOAP06340 AC084768.2-201ENST00000622736 221 ntBASIC2.18□□□□□ -2.06
HLA-DOAP06340 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC2.18□□□□□ -2.06
HLA-DOAP06340 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.17□□□□□ -2.06
HLA-DOAP06340 SNORD50B-201ENST00000364995 70 ntBASIC2.17□□□□□ -2.06
HLA-DOAP06340 MIR539-201ENST00000365690 78 ntBASIC2.17□□□□□ -2.06
HLA-DOAP06340 RNU6-80P-201ENST00000384195 107 ntBASIC2.17□□□□□ -2.06
HLA-DOAP06340 RNA5SP270-201ENST00000411361 118 ntBASIC2.17□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 165.3 ms