Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 RNU4-52P-201ENST00000384209 138 ntBASIC1.76□□□□□ -2.13
LDB3O75112 RNU6-1117P-201ENST00000384525 104 ntBASIC1.76□□□□□ -2.13
LDB3O75112 Y_RNA.521-201ENST00000384560 114 ntBASIC1.76□□□□□ -2.13
LDB3O75112 MIR562-201ENST00000384894 95 ntBASIC1.76□□□□□ -2.13
LDB3O75112 SNORA12.1-201ENST00000390873 148 ntBASIC1.76□□□□□ -2.13
LDB3O75112 SNORD37.2-201ENST00000391075 66 ntBASIC1.76□□□□□ -2.13
LDB3O75112 RNA5SP496-201ENST00000391240 109 ntBASIC1.76□□□□□ -2.13
LDB3O75112 AC233266.1-201ENST00000454518 96 ntBASIC1.76□□□□□ -2.13
LDB3O75112 snoU13.15-201ENST00000459407 104 ntBASIC1.76□□□□□ -2.13
LDB3O75112 SNORD77.4-201ENST00000516158 81 ntBASIC1.76□□□□□ -2.13
LDB3O75112 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.76□□□□□ -2.13
LDB3O75112 MIR5094-201ENST00000578766 85 ntBASIC1.76□□□□□ -2.13
LDB3O75112 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.76□□□□□ -2.13
LDB3O75112 AC069114.2-201ENST00000604699 304 ntBASIC1.76□□□□□ -2.13
LDB3O75112 AC242852.1-201ENST00000612151 96 ntBASIC1.76□□□□□ -2.13
LDB3O75112 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.76□□□□□ -2.13
LDB3O75112 AC244015.1-201ENST00000622301 99 ntBASIC1.76□□□□□ -2.13
LDB3O75112 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.76□□□□□ -2.13
LDB3O75112 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC1.76□□□□□ -2.13
LDB3O75112 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
LDB3O75112 RNU6-199P-201ENST00000362954 107 ntBASIC1.75□□□□□ -2.13
LDB3O75112 Y_RNA.267-201ENST00000364679 109 ntBASIC1.75□□□□□ -2.13
LDB3O75112 RNY3P5-201ENST00000384127 102 ntBASIC1.75□□□□□ -2.13
LDB3O75112 SNORA40-201ENST00000388090 126 ntBASIC1.75□□□□□ -2.13
LDB3O75112 RNU6-1168P-201ENST00000390831 104 ntBASIC1.75□□□□□ -2.13
LDB3O75112 SNORD72-201ENST00000390994 80 ntBASIC1.75□□□□□ -2.13
LDB3O75112 SNORA40.18-201ENST00000391200 128 ntBASIC1.75□□□□□ -2.13
LDB3O75112 MIR513C-201ENST00000401352 84 ntBASIC1.75□□□□□ -2.13
LDB3O75112 RNU6-735P-201ENST00000410612 107 ntBASIC1.75□□□□□ -2.13
LDB3O75112 RNU2-51P-201ENST00000410708 197 ntBASIC1.75□□□□□ -2.13
LDB3O75112 RPL30P13-201ENST00000418873 348 ntBASIC1.75□□□□□ -2.13
LDB3O75112 RPS27P1-201ENST00000450552 247 ntBASIC1.75□□□□□ -2.13
LDB3O75112 snoU13.26-201ENST00000459452 105 ntBASIC1.75□□□□□ -2.13
LDB3O75112 MRPS17P9-201ENST00000511924 393 ntBASIC1.75□□□□□ -2.13
LDB3O75112 RNVU1-2-201ENST00000516326 135 ntBASIC1.75□□□□□ -2.13
LDB3O75112 RNU6-197P-201ENST00000516680 100 ntBASIC1.75□□□□□ -2.13
LDB3O75112 MIR378D2-201ENST00000580636 98 ntBASIC1.75□□□□□ -2.13
LDB3O75112 AL096840.1-201ENST00000603287 93 ntBASIC1.75□□□□□ -2.13
LDB3O75112 uc_338.4-201ENST00000616635 176 ntBASIC1.75□□□□□ -2.13
LDB3O75112 MIR6844-201ENST00000637122 62 ntBASIC1.75□□□□□ -2.13
LDB3O75112 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.75□□□□□ -2.13
LDB3O75112 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC1.74□□□□□ -2.13
LDB3O75112 Y_RNA.71-201ENST00000362892 104 ntBASIC1.74□□□□□ -2.13
LDB3O75112 Y_RNA.253-201ENST00000364562 112 ntBASIC1.74□□□□□ -2.13
LDB3O75112 Y_RNA.634-201ENST00000364811 113 ntBASIC1.74□□□□□ -2.13
LDB3O75112 Y_RNA.432-201ENST00000384087 111 ntBASIC1.74□□□□□ -2.13
LDB3O75112 Y_RNA.486-201ENST00000384398 107 ntBASIC1.74□□□□□ -2.13
LDB3O75112 MIR1289-2-201ENST00000408360 111 ntBASIC1.74□□□□□ -2.13
LDB3O75112 Y_RNA.621-201ENST00000411065 96 ntBASIC1.74□□□□□ -2.13
LDB3O75112 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.74□□□□□ -2.13
LDB3O75112 RNU6-1211P-201ENST00000459179 105 ntBASIC1.74□□□□□ -2.13
LDB3O75112 RNU7-94P-201ENST00000459576 63 ntBASIC1.74□□□□□ -2.13
LDB3O75112 AL163195.1-201ENST00000496941 348 ntBASIC1.74□□□□□ -2.13
LDB3O75112 Y_RNA.686-201ENST00000516548 134 ntBASIC1.74□□□□□ -2.13
LDB3O75112 RNU7-149P-201ENST00000516739 59 ntBASIC1.74□□□□□ -2.13
LDB3O75112 MIR514B-201ENST00000516774 80 ntBASIC1.74□□□□□ -2.13
LDB3O75112 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC1.74□□□□□ -2.13
LDB3O75112 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC1.74□□□□□ -2.13
LDB3O75112 MIR6079-201ENST00000635807 62 ntBASIC1.74□□□□□ -2.13
LDB3O75112 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.74□□□□□ -2.13
LDB3O75112 SNORA1B-201ENST00000362535 133 ntBASIC1.73□□□□□ -2.13
LDB3O75112 MIR583-201ENST00000384846 75 ntBASIC1.73□□□□□ -2.13
LDB3O75112 RNU6-1154P-201ENST00000391001 104 ntBASIC1.73□□□□□ -2.13
LDB3O75112 SUMO2P12-201ENST00000405924 140 ntBASIC1.73□□□□□ -2.13
LDB3O75112 AC069257.2-201ENST00000441819 155 ntBASIC1.73□□□□□ -2.13
LDB3O75112 RNA5SP57-201ENST00000459463 123 ntBASIC1.73□□□□□ -2.13
LDB3O75112 RPS26P45-201ENST00000471748 340 ntBASIC1.73□□□□□ -2.13
LDB3O75112 RNA5SP364-201ENST00000516938 78 ntBASIC1.73□□□□□ -2.13
LDB3O75112 RNU2-60P-201ENST00000517290 128 ntBASIC1.73□□□□□ -2.13
LDB3O75112 AC007751.1-201ENST00000529260 376 ntBASIC1.73□□□□□ -2.13
LDB3O75112 AC084364.2-201ENST00000546924 395 ntBASIC1.73□□□□□ -2.13
LDB3O75112 SUB1P4-201ENST00000566062 339 ntBASIC1.73□□□□□ -2.13
LDB3O75112 AC022254.1-201ENST00000567857 235 ntBASIC1.73□□□□□ -2.13
LDB3O75112 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.73□□□□□ -2.13
LDB3O75112 MIR4448-201ENST00000584360 86 ntBASIC1.73□□□□□ -2.13
LDB3O75112 AC022217.4-201ENST00000604389 163 ntBASIC1.73□□□□□ -2.13
LDB3O75112 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.73□□□□□ -2.13
LDB3O75112 Pinc.1-201ENST00000616452 154 ntBASIC1.73□□□□□ -2.13
LDB3O75112 AL359851.1-201ENST00000569460 4997 ntBASIC1.72□□□□□ -2.13
LDB3O75112 AC018630.2-201ENST00000534866 2403 ntBASIC1.72□□□□□ -2.13
LDB3O75112 U8.1-201ENST00000362843 134 ntBASIC1.72□□□□□ -2.13
LDB3O75112 Y_RNA.66-201ENST00000362862 102 ntBASIC1.72□□□□□ -2.13
LDB3O75112 SNORA16.1-201ENST00000364597 132 ntBASIC1.72□□□□□ -2.13
LDB3O75112 RNU6-597P-201ENST00000365620 102 ntBASIC1.72□□□□□ -2.13
LDB3O75112 U8.13-201ENST00000390842 128 ntBASIC1.72□□□□□ -2.13
LDB3O75112 SNRPGP10-201ENST00000432323 225 ntBASIC1.72□□□□□ -2.13
LDB3O75112 RNU7-107P-201ENST00000459121 61 ntBASIC1.72□□□□□ -2.13
LDB3O75112 RPS29P11-201ENST00000496507 171 ntBASIC1.72□□□□□ -2.13
LDB3O75112 RPL23AP63-201ENST00000498752 471 ntBASIC1.72□□□□□ -2.13
LDB3O75112 RNA5SP182-201ENST00000516064 82 ntBASIC1.72□□□□□ -2.13
LDB3O75112 RNU6-1299P-201ENST00000516316 100 ntBASIC1.72□□□□□ -2.13
LDB3O75112 RNU6-479P-201ENST00000516348 105 ntBASIC1.72□□□□□ -2.13
LDB3O75112 RNU2-56P-201ENST00000516826 190 ntBASIC1.72□□□□□ -2.13
LDB3O75112 MIR4713-201ENST00000582691 75 ntBASIC1.72□□□□□ -2.13
LDB3O75112 AC097639.2-201ENST00000603159 172 ntBASIC1.72□□□□□ -2.13
LDB3O75112 AL591926.4-201ENST00000616895 298 ntBASIC1.72□□□□□ -2.13
LDB3O75112 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
LDB3O75112 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC1.71□□□□□ -2.14
LDB3O75112 RNU6-915P-201ENST00000364943 103 ntBASIC1.71□□□□□ -2.14
LDB3O75112 MIR520G-201ENST00000385064 90 ntBASIC1.71□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 105.4 ms