Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 SNORA31.17-201ENST00000516953 127 ntBASIC2.32□□□□□ -2.04
TRIM39Q9HCM9 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC2.32□□□□□ -2.04
TRIM39Q9HCM9 AL590808.1-201ENST00000618696 141 ntBASIC2.32□□□□□ -2.04
TRIM39Q9HCM9 AC027279.3-201ENST00000625055 122 ntBASIC2.32□□□□□ -2.04
TRIM39Q9HCM9 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.32□□□□□ -2.04
TRIM39Q9HCM9 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
TRIM39Q9HCM9 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.31□□□□□ -2.04
TRIM39Q9HCM9 Y_RNA.634-201ENST00000364811 113 ntBASIC2.31□□□□□ -2.04
TRIM39Q9HCM9 RNU4-53P-201ENST00000410828 140 ntBASIC2.31□□□□□ -2.04
TRIM39Q9HCM9 SUMO1P3-201ENST00000439961 304 ntBASIC2.31□□□□□ -2.04
TRIM39Q9HCM9 RNU6-504P-201ENST00000516568 104 ntBASIC2.31□□□□□ -2.04
TRIM39Q9HCM9 RNU7-121P-201ENST00000516604 62 ntBASIC2.31□□□□□ -2.04
TRIM39Q9HCM9 RNU6-255P-201ENST00000516957 105 ntBASIC2.31□□□□□ -2.04
TRIM39Q9HCM9 IGLV3-17-201ENST00000519099 244 ntBASIC2.31□□□□□ -2.04
TRIM39Q9HCM9 SNORD53-201ENST00000579969 78 ntBASIC2.31□□□□□ -2.04
TRIM39Q9HCM9 MIR5007-201ENST00000583098 95 ntBASIC2.31□□□□□ -2.04
TRIM39Q9HCM9 DNAJC19P2-201ENST00000593340 302 ntBASIC2.31□□□□□ -2.04
TRIM39Q9HCM9 SNORD50B-201ENST00000364995 70 ntBASIC2.3□□□□□ -2.04
TRIM39Q9HCM9 Y_RNA.398-201ENST00000383952 99 ntBASIC2.3□□□□□ -2.04
TRIM39Q9HCM9 RNU6-746P-201ENST00000384112 109 ntBASIC2.3□□□□□ -2.04
TRIM39Q9HCM9 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC2.3□□□□□ -2.04
TRIM39Q9HCM9 AC097639.2-201ENST00000603159 172 ntBASIC2.3□□□□□ -2.04
TRIM39Q9HCM9 RNU6-199P-201ENST00000362954 107 ntBASIC2.29□□□□□ -2.04
TRIM39Q9HCM9 Y_RNA.170-201ENST00000363746 110 ntBASIC2.29□□□□□ -2.04
TRIM39Q9HCM9 RNY1P5-201ENST00000383890 115 ntBASIC2.29□□□□□ -2.04
TRIM39Q9HCM9 SNORA6-201ENST00000384033 151 ntBASIC2.29□□□□□ -2.04
TRIM39Q9HCM9 RNU6-424P-201ENST00000384367 105 ntBASIC2.29□□□□□ -2.04
TRIM39Q9HCM9 Y_RNA.486-201ENST00000384398 107 ntBASIC2.29□□□□□ -2.04
TRIM39Q9HCM9 SNORD72-201ENST00000390994 80 ntBASIC2.29□□□□□ -2.04
TRIM39Q9HCM9 SNORD37.2-201ENST00000391075 66 ntBASIC2.29□□□□□ -2.04
TRIM39Q9HCM9 RPL23AP6-201ENST00000446637 472 ntBASIC2.29□□□□□ -2.04
TRIM39Q9HCM9 AC008413.1-201ENST00000511864 177 ntBASIC2.29□□□□□ -2.04
TRIM39Q9HCM9 RNA5SP281-201ENST00000516504 135 ntBASIC2.29□□□□□ -2.04
TRIM39Q9HCM9 SCARNA16.3-201ENST00000516595 184 ntBASIC2.29□□□□□ -2.04
TRIM39Q9HCM9 Y_RNA.703-201ENST00000516846 111 ntBASIC2.29□□□□□ -2.04
TRIM39Q9HCM9 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC2.29□□□□□ -2.04
TRIM39Q9HCM9 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC2.29□□□□□ -2.04
TRIM39Q9HCM9 MIR3646-201ENST00000578301 84 ntBASIC2.29□□□□□ -2.04
TRIM39Q9HCM9 AL365434.2-201ENST00000607979 234 ntBASIC2.29□□□□□ -2.04
TRIM39Q9HCM9 AL513423.1-201ENST00000621695 132 ntBASIC2.29□□□□□ -2.04
TRIM39Q9HCM9 ZNF658B-202ENST00000615961 3375 ntBASIC2.29□□□□□ -2.04
TRIM39Q9HCM9 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.28□□□□□ -2.04
TRIM39Q9HCM9 SNORA25.7-201ENST00000364375 127 ntBASIC2.28□□□□□ -2.04
TRIM39Q9HCM9 RNA5SP126-201ENST00000365092 109 ntBASIC2.28□□□□□ -2.04
TRIM39Q9HCM9 Y_RNA.393-201ENST00000383936 102 ntBASIC2.28□□□□□ -2.04
TRIM39Q9HCM9 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC2.28□□□□□ -2.04
TRIM39Q9HCM9 MIR891A-201ENST00000401237 79 ntBASIC2.28□□□□□ -2.04
TRIM39Q9HCM9 RNU7-12P-201ENST00000516030 62 ntBASIC2.28□□□□□ -2.04
TRIM39Q9HCM9 RNU7-200P-201ENST00000516105 62 ntBASIC2.28□□□□□ -2.04
TRIM39Q9HCM9 RNA5SP168-201ENST00000516642 112 ntBASIC2.28□□□□□ -2.04
TRIM39Q9HCM9 AC121758.2-201ENST00000553271 193 ntBASIC2.28□□□□□ -2.04
TRIM39Q9HCM9 AL773524.1-201ENST00000614065 229 ntBASIC2.28□□□□□ -2.04
TRIM39Q9HCM9 Y_RNA.778-201ENST00000620203 90 ntBASIC2.28□□□□□ -2.04
TRIM39Q9HCM9 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC2.28□□□□□ -2.04
TRIM39Q9HCM9 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC2.28□□□□□ -2.04
TRIM39Q9HCM9 Y_RNA.91-201ENST00000363042 107 ntBASIC2.27□□□□□ -2.05
TRIM39Q9HCM9 SNORA16B-201ENST00000364674 135 ntBASIC2.27□□□□□ -2.05
TRIM39Q9HCM9 SNORD24-201ENST00000383884 75 ntBASIC2.27□□□□□ -2.05
TRIM39Q9HCM9 AC244636.1-201ENST00000421152 228 ntBASIC2.27□□□□□ -2.05
TRIM39Q9HCM9 CALM2P4-201ENST00000430810 426 ntBASIC2.27□□□□□ -2.05
TRIM39Q9HCM9 PGBD4P5-201ENST00000445958 426 ntBASIC2.27□□□□□ -2.05
TRIM39Q9HCM9 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.27□□□□□ -2.05
TRIM39Q9HCM9 AC114811.1-201ENST00000507207 168 ntBASIC2.27□□□□□ -2.05
TRIM39Q9HCM9 AC021506.2-201ENST00000612354 169 ntBASIC2.27□□□□□ -2.05
TRIM39Q9HCM9 AC064859.1-201ENST00000624741 174 ntBASIC2.27□□□□□ -2.05
TRIM39Q9HCM9 MIR6844-201ENST00000637122 62 ntBASIC2.27□□□□□ -2.05
TRIM39Q9HCM9 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.27□□□□□ -2.05
TRIM39Q9HCM9 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.26□□□□□ -2.05
TRIM39Q9HCM9 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC2.26□□□□□ -2.05
TRIM39Q9HCM9 RNU6-833P-201ENST00000363486 107 ntBASIC2.26□□□□□ -2.05
TRIM39Q9HCM9 RNU6-414P-201ENST00000363705 104 ntBASIC2.26□□□□□ -2.05
TRIM39Q9HCM9 RNU6-151P-201ENST00000364158 107 ntBASIC2.26□□□□□ -2.05
TRIM39Q9HCM9 RNU6-1130P-201ENST00000365434 107 ntBASIC2.26□□□□□ -2.05
TRIM39Q9HCM9 RNU6-597P-201ENST00000365620 102 ntBASIC2.26□□□□□ -2.05
TRIM39Q9HCM9 Y_RNA.400-201ENST00000383963 111 ntBASIC2.26□□□□□ -2.05
TRIM39Q9HCM9 RNU6-301P-201ENST00000384277 107 ntBASIC2.26□□□□□ -2.05
TRIM39Q9HCM9 SNORD38C-201ENST00000384381 69 ntBASIC2.26□□□□□ -2.05
TRIM39Q9HCM9 Y_RNA.506-201ENST00000384494 102 ntBASIC2.26□□□□□ -2.05
TRIM39Q9HCM9 U8.16-201ENST00000391279 133 ntBASIC2.26□□□□□ -2.05
TRIM39Q9HCM9 SNRPGP13-201ENST00000442212 177 ntBASIC2.26□□□□□ -2.05
TRIM39Q9HCM9 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC2.26□□□□□ -2.05
TRIM39Q9HCM9 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.26□□□□□ -2.05
TRIM39Q9HCM9 MIR4298-201ENST00000584380 73 ntBASIC2.26□□□□□ -2.05
TRIM39Q9HCM9 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.26□□□□□ -2.05
TRIM39Q9HCM9 MIR6766-201ENST00000622641 72 ntBASIC2.26□□□□□ -2.05
TRIM39Q9HCM9 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.26□□□□□ -2.05
TRIM39Q9HCM9 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
TRIM39Q9HCM9 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC2.26□□□□□ -2.05
TRIM39Q9HCM9 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.25□□□□□ -2.05
TRIM39Q9HCM9 MIRLET7C-201ENST00000362160 84 ntBASIC2.25□□□□□ -2.05
TRIM39Q9HCM9 AL356320.1-201ENST00000429616 163 ntBASIC2.25□□□□□ -2.05
TRIM39Q9HCM9 MTND5P41-201ENST00000517498 206 ntBASIC2.25□□□□□ -2.05
TRIM39Q9HCM9 AC006441.5-201ENST00000612680 209 ntBASIC2.25□□□□□ -2.05
TRIM39Q9HCM9 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
TRIM39Q9HCM9 SNORA75.5-201ENST00000391291 81 ntBASIC2.24□□□□□ -2.05
TRIM39Q9HCM9 MIR513C-201ENST00000401352 84 ntBASIC2.24□□□□□ -2.05
TRIM39Q9HCM9 Z98742.3-201ENST00000418637 326 ntBASIC2.24□□□□□ -2.05
TRIM39Q9HCM9 MIR3133-201ENST00000583157 78 ntBASIC2.24□□□□□ -2.05
TRIM39Q9HCM9 SNORD3E-202ENST00000627253 216 ntBASIC2.24□□□□□ -2.05
TRIM39Q9HCM9 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.24□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 496.4 ms