Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 Y_RNA.92-201ENST00000363043 102 ntBASIC1.41□□□□□ -2.18
USP28Q96RU2 Y_RNA.235-201ENST00000364412 102 ntBASIC1.41□□□□□ -2.18
USP28Q96RU2 Y_RNA.253-201ENST00000364562 112 ntBASIC1.41□□□□□ -2.18
USP28Q96RU2 Y_RNA.306-201ENST00000365015 102 ntBASIC1.41□□□□□ -2.18
USP28Q96RU2 Y_RNA.312-201ENST00000365089 102 ntBASIC1.41□□□□□ -2.18
USP28Q96RU2 Y_RNA.322-201ENST00000365151 102 ntBASIC1.41□□□□□ -2.18
USP28Q96RU2 RNU6-1031P-201ENST00000384773 107 ntBASIC1.41□□□□□ -2.18
USP28Q96RU2 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.41□□□□□ -2.18
USP28Q96RU2 MIR548H3-201ENST00000408771 118 ntBASIC1.41□□□□□ -2.18
USP28Q96RU2 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.41□□□□□ -2.18
USP28Q96RU2 Y_RNA.650-201ENST00000459002 102 ntBASIC1.41□□□□□ -2.18
USP28Q96RU2 RNU7-94P-201ENST00000459576 63 ntBASIC1.41□□□□□ -2.18
USP28Q96RU2 OR9P1P-201ENST00000496431 281 ntBASIC1.41□□□□□ -2.18
USP28Q96RU2 RNU2-56P-201ENST00000516826 190 ntBASIC1.41□□□□□ -2.18
USP28Q96RU2 Y_RNA.777-201ENST00000516982 102 ntBASIC1.41□□□□□ -2.18
USP28Q96RU2 RNU1-92P-201ENST00000517017 135 ntBASIC1.41□□□□□ -2.18
USP28Q96RU2 RNU6-111P-201ENST00000517179 105 ntBASIC1.41□□□□□ -2.18
USP28Q96RU2 RNU6-1116P-201ENST00000517269 99 ntBASIC1.41□□□□□ -2.18
USP28Q96RU2 MIR5692C2-201ENST00000577959 77 ntBASIC1.41□□□□□ -2.18
USP28Q96RU2 MIR4421-201ENST00000578133 69 ntBASIC1.41□□□□□ -2.18
USP28Q96RU2 Y_RNA.771-201ENST00000598668 102 ntBASIC1.41□□□□□ -2.18
USP28Q96RU2 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC1.41□□□□□ -2.18
USP28Q96RU2 AL591926.4-201ENST00000616895 298 ntBASIC1.41□□□□□ -2.18
USP28Q96RU2 Y_RNA.789-201ENST00000622480 102 ntBASIC1.41□□□□□ -2.18
USP28Q96RU2 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.4□□□□□ -2.18
USP28Q96RU2 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.4□□□□□ -2.19
USP28Q96RU2 Y_RNA.20-201ENST00000362479 113 ntBASIC1.4□□□□□ -2.19
USP28Q96RU2 RNU6-899P-201ENST00000363947 107 ntBASIC1.4□□□□□ -2.19
USP28Q96RU2 Y_RNA.590-201ENST00000410140 107 ntBASIC1.4□□□□□ -2.19
USP28Q96RU2 COX6CP10-201ENST00000416832 224 ntBASIC1.4□□□□□ -2.19
USP28Q96RU2 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC1.4□□□□□ -2.19
USP28Q96RU2 CALM2P4-201ENST00000430810 426 ntBASIC1.4□□□□□ -2.19
USP28Q96RU2 AL049830.1-201ENST00000468034 425 ntBASIC1.4□□□□□ -2.19
USP28Q96RU2 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC1.4□□□□□ -2.19
USP28Q96RU2 RNU6-1023P-201ENST00000516137 106 ntBASIC1.4□□□□□ -2.19
USP28Q96RU2 RNA5SP481-201ENST00000516814 122 ntBASIC1.4□□□□□ -2.19
USP28Q96RU2 AP002004.2-201ENST00000531656 154 ntBASIC1.4□□□□□ -2.19
USP28Q96RU2 MIR4709-201ENST00000577272 72 ntBASIC1.4□□□□□ -2.19
USP28Q96RU2 MIR4282-201ENST00000583613 67 ntBASIC1.4□□□□□ -2.19
USP28Q96RU2 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC1.4□□□□□ -2.19
USP28Q96RU2 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.39□□□□□ -2.19
USP28Q96RU2 RNU6-379P-201ENST00000363813 104 ntBASIC1.39□□□□□ -2.19
USP28Q96RU2 Y_RNA.265-201ENST00000364677 108 ntBASIC1.39□□□□□ -2.19
USP28Q96RU2 Y_RNA.293-201ENST00000364908 93 ntBASIC1.39□□□□□ -2.19
USP28Q96RU2 RNU6-360P-201ENST00000390944 104 ntBASIC1.39□□□□□ -2.19
USP28Q96RU2 RPL30P13-201ENST00000418873 348 ntBASIC1.39□□□□□ -2.19
USP28Q96RU2 RNU7-95P-201ENST00000459222 64 ntBASIC1.39□□□□□ -2.19
USP28Q96RU2 RNU6-437P-201ENST00000459408 95 ntBASIC1.39□□□□□ -2.19
USP28Q96RU2 RNY3P16-201ENST00000516338 101 ntBASIC1.39□□□□□ -2.19
USP28Q96RU2 RNU7-116P-201ENST00000516940 62 ntBASIC1.39□□□□□ -2.19
USP28Q96RU2 RNU6-1271P-201ENST00000517049 105 ntBASIC1.39□□□□□ -2.19
USP28Q96RU2 RNU6-902P-201ENST00000517212 91 ntBASIC1.39□□□□□ -2.19
USP28Q96RU2 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC1.39□□□□□ -2.19
USP28Q96RU2 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC1.39□□□□□ -2.19
USP28Q96RU2 MIR8063-201ENST00000621930 81 ntBASIC1.39□□□□□ -2.19
USP28Q96RU2 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.38□□□□□ -2.19
USP28Q96RU2 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.38□□□□□ -2.19
USP28Q96RU2 MIRLET7C-201ENST00000362160 84 ntBASIC1.38□□□□□ -2.19
USP28Q96RU2 SNORD68-201ENST00000363214 84 ntBASIC1.38□□□□□ -2.19
USP28Q96RU2 RNU6-1205P-201ENST00000363625 106 ntBASIC1.38□□□□□ -2.19
USP28Q96RU2 Y_RNA.188-201ENST00000363952 111 ntBASIC1.38□□□□□ -2.19
USP28Q96RU2 Y_RNA.203-201ENST00000364106 102 ntBASIC1.38□□□□□ -2.19
USP28Q96RU2 Y_RNA.796-201ENST00000364268 102 ntBASIC1.38□□□□□ -2.19
USP28Q96RU2 Y_RNA.799-201ENST00000364992 102 ntBASIC1.38□□□□□ -2.19
USP28Q96RU2 MIR194-1-201ENST00000384892 85 ntBASIC1.38□□□□□ -2.19
USP28Q96RU2 U8.16-201ENST00000391279 133 ntBASIC1.38□□□□□ -2.19
USP28Q96RU2 RN7SKP200-201ENST00000410564 320 ntBASIC1.38□□□□□ -2.19
USP28Q96RU2 FTH1P12-201ENST00000432137 551 ntBASIC1.38□□□□□ -2.19
USP28Q96RU2 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC1.38□□□□□ -2.19
USP28Q96RU2 Y_RNA.679-201ENST00000516416 91 ntBASIC1.38□□□□□ -2.19
USP28Q96RU2 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC1.38□□□□□ -2.19
USP28Q96RU2 AL442067.1-201ENST00000613261 223 ntBASIC1.38□□□□□ -2.19
USP28Q96RU2 AL121890.5-201ENST00000620848 304 ntBASIC1.38□□□□□ -2.19
USP28Q96RU2 AC078938.1-201ENST00000620993 318 ntBASIC1.38□□□□□ -2.19
USP28Q96RU2 RNU6-1209P-201ENST00000363655 107 ntBASIC1.37□□□□□ -2.19
USP28Q96RU2 SNORA20.1-201ENST00000364790 130 ntBASIC1.37□□□□□ -2.19
USP28Q96RU2 Y_RNA.292-201ENST00000364904 97 ntBASIC1.37□□□□□ -2.19
USP28Q96RU2 Y_RNA.401-201ENST00000383965 117 ntBASIC1.37□□□□□ -2.19
USP28Q96RU2 SNORD26-201ENST00000384147 75 ntBASIC1.37□□□□□ -2.19
USP28Q96RU2 MIR150-201ENST00000385048 84 ntBASIC1.37□□□□□ -2.19
USP28Q96RU2 SNORD58.1-201ENST00000391313 66 ntBASIC1.37□□□□□ -2.19
USP28Q96RU2 AL161935.2-201ENST00000414627 60 ntBASIC1.37□□□□□ -2.19
USP28Q96RU2 MLLT10P1-201ENST00000418346 262 ntBASIC1.37□□□□□ -2.19
USP28Q96RU2 JTBP1-201ENST00000441314 247 ntBASIC1.37□□□□□ -2.19
USP28Q96RU2 AC093850.1-201ENST00000454121 251 ntBASIC1.37□□□□□ -2.19
USP28Q96RU2 Y_RNA.638-201ENST00000459374 113 ntBASIC1.37□□□□□ -2.19
USP28Q96RU2 RNU6-388P-201ENST00000517012 105 ntBASIC1.37□□□□□ -2.19
USP28Q96RU2 RNU6-389P-201ENST00000517048 105 ntBASIC1.37□□□□□ -2.19
USP28Q96RU2 AC100767.1-201ENST00000528178 123 ntBASIC1.37□□□□□ -2.19
USP28Q96RU2 MIR4778-201ENST00000577635 80 ntBASIC1.37□□□□□ -2.19
USP28Q96RU2 SNORA77B-201ENST00000578179 125 ntBASIC1.37□□□□□ -2.19
USP28Q96RU2 AC006006.1-201ENST00000603082 144 ntBASIC1.37□□□□□ -2.19
USP28Q96RU2 AP000942.4-201ENST00000604811 241 ntBASIC1.37□□□□□ -2.19
USP28Q96RU2 BX284668.6-201ENST00000606899 438 ntBASIC1.37□□□□□ -2.19
USP28Q96RU2 AL365265.1-201ENST00000621045 234 ntBASIC1.37□□□□□ -2.19
USP28Q96RU2 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.37□□□□□ -2.19
USP28Q96RU2 ICE2P2-201ENST00000483823 2787 ntBASIC1.36□□□□□ -2.19
USP28Q96RU2 MIR26B-201ENST00000362251 77 ntBASIC1.36□□□□□ -2.19
USP28Q96RU2 RNU6-653P-201ENST00000363074 106 ntBASIC1.36□□□□□ -2.19
USP28Q96RU2 RNU6-424P-201ENST00000384367 105 ntBASIC1.36□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 99.2 ms