Protein–RNA interactions for Protein: P78367

NKX3-2, Homeobox protein Nkx-3.2, humanhuman

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-2P78367 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.58□□□□□ -2
NKX3-2P78367 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC2.58□□□□□ -2
NKX3-2P78367 SNRPGP10-201ENST00000432323 225 ntBASIC2.58□□□□□ -2
NKX3-2P78367 Y_RNA.692-201ENST00000516627 105 ntBASIC2.58□□□□□ -2
NKX3-2P78367 Y_RNA.712-201ENST00000517011 92 ntBASIC2.58□□□□□ -2
NKX3-2P78367 NDUFA5P6-201ENST00000542110 379 ntBASIC2.58□□□□□ -2
NKX3-2P78367 Y_RNA.757-201ENST00000578934 114 ntBASIC2.58□□□□□ -2
NKX3-2P78367 MIR4662B-201ENST00000579498 81 ntBASIC2.58□□□□□ -2
NKX3-2P78367 MIR3121-201ENST00000579680 77 ntBASIC2.58□□□□□ -2
NKX3-2P78367 AL353149.1-201ENST00000610667 244 ntBASIC2.58□□□□□ -2
NKX3-2P78367 AC010297.1-201ENST00000623948 149 ntBASIC2.58□□□□□ -2
NKX3-2P78367 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.58□□□□□ -2
NKX3-2P78367 AC018630.2-201ENST00000534866 2403 ntBASIC2.58□□□□□ -2
NKX3-2P78367 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.58□□□□□ -2
NKX3-2P78367 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.58□□□□□ -2
NKX3-2P78367 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
NKX3-2P78367 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.57□□□□□ -2
NKX3-2P78367 RNU6-309P-201ENST00000364573 106 ntBASIC2.57□□□□□ -2
NKX3-2P78367 RNU6-1056P-201ENST00000383996 107 ntBASIC2.57□□□□□ -2
NKX3-2P78367 SNORA1-201ENST00000384107 130 ntBASIC2.57□□□□□ -2
NKX3-2P78367 SNORA26-201ENST00000391286 122 ntBASIC2.57□□□□□ -2
NKX3-2P78367 AL445687.1-201ENST00000439946 251 ntBASIC2.57□□□□□ -2
NKX3-2P78367 ATP5J2P3-201ENST00000451550 258 ntBASIC2.57□□□□□ -2
NKX3-2P78367 RNU6-772P-201ENST00000516042 105 ntBASIC2.57□□□□□ -2
NKX3-2P78367 RN7SKP179-201ENST00000516126 217 ntBASIC2.57□□□□□ -2
NKX3-2P78367 RNU1-142P-201ENST00000516682 145 ntBASIC2.57□□□□□ -2
NKX3-2P78367 RNU6-365P-201ENST00000517113 106 ntBASIC2.57□□□□□ -2
NKX3-2P78367 MIR3616-201ENST00000584070 92 ntBASIC2.57□□□□□ -2
NKX3-2P78367 ZNF271P-202ENST00000465539 1970 ntBASIC2.57□□□□□ -2
NKX3-2P78367 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.57□□□□□ -2
NKX3-2P78367 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC2.57□□□□□ -2
NKX3-2P78367 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.56□□□□□ -2
NKX3-2P78367 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
NKX3-2P78367 RNU6-834P-201ENST00000362367 110 ntBASIC2.56□□□□□ -2
NKX3-2P78367 Y_RNA.114-201ENST00000363265 113 ntBASIC2.56□□□□□ -2
NKX3-2P78367 SNORA38-201ENST00000363946 132 ntBASIC2.56□□□□□ -2
NKX3-2P78367 AC009238.1-201ENST00000442165 424 ntBASIC2.56□□□□□ -2
NKX3-2P78367 AL158147.1-201ENST00000443970 75 ntBASIC2.56□□□□□ -2
NKX3-2P78367 AC009237.6-201ENST00000446969 424 ntBASIC2.56□□□□□ -2
NKX3-2P78367 RNU1-131P-201ENST00000458943 161 ntBASIC2.56□□□□□ -2
NKX3-2P78367 RNU5E-3P-201ENST00000515913 68 ntBASIC2.56□□□□□ -2
NKX3-2P78367 Y_RNA.690-201ENST00000516603 95 ntBASIC2.56□□□□□ -2
NKX3-2P78367 RNU6-341P-201ENST00000516973 96 ntBASIC2.56□□□□□ -2
NKX3-2P78367 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.56□□□□□ -2
NKX3-2P78367 MIR203B-201ENST00000636080 86 ntBASIC2.56□□□□□ -2
NKX3-2P78367 MIR219B-201ENST00000637023 88 ntBASIC2.56□□□□□ -2
NKX3-2P78367 Y_RNA.52-201ENST00000362760 96 ntBASIC2.55□□□□□ -2
NKX3-2P78367 SNORD61-201ENST00000384252 73 ntBASIC2.55□□□□□ -2
NKX3-2P78367 SNORA8-201ENST00000384574 139 ntBASIC2.55□□□□□ -2
NKX3-2P78367 SNORA40.5-201ENST00000391061 128 ntBASIC2.55□□□□□ -2
NKX3-2P78367 RNU6-1064P-201ENST00000410626 104 ntBASIC2.55□□□□□ -2
NKX3-2P78367 Y_RNA.630-201ENST00000411370 108 ntBASIC2.55□□□□□ -2
NKX3-2P78367 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC2.55□□□□□ -2
NKX3-2P78367 AC108210.2-201ENST00000503681 201 ntBASIC2.55□□□□□ -2
NKX3-2P78367 SNORA18.4-201ENST00000516440 124 ntBASIC2.55□□□□□ -2
NKX3-2P78367 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.55□□□□□ -2
NKX3-2P78367 MIR4446-201ENST00000578505 67 ntBASIC2.55□□□□□ -2
NKX3-2P78367 MIR3129-201ENST00000581095 76 ntBASIC2.55□□□□□ -2
NKX3-2P78367 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC2.55□□□□□ -2
NKX3-2P78367 MIR6129-201ENST00000616087 109 ntBASIC2.55□□□□□ -2
NKX3-2P78367 AL591926.4-201ENST00000616895 298 ntBASIC2.55□□□□□ -2
NKX3-2P78367 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.55□□□□□ -2
NKX3-2P78367 MIR126-201ENST00000362291 85 ntBASIC2.54□□□□□ -2
NKX3-2P78367 SNORA1B-201ENST00000362535 133 ntBASIC2.54□□□□□ -2
NKX3-2P78367 RNU6-862P-201ENST00000362804 105 ntBASIC2.54□□□□□ -2
NKX3-2P78367 RNU1-91P-201ENST00000364746 163 ntBASIC2.54□□□□□ -2
NKX3-2P78367 RNU6-160P-201ENST00000384591 107 ntBASIC2.54□□□□□ -2
NKX3-2P78367 RNA5SP323-201ENST00000391094 133 ntBASIC2.54□□□□□ -2
NKX3-2P78367 AL603914.1-201ENST00000401964 204 ntBASIC2.54□□□□□ -2
NKX3-2P78367 AL163195.1-201ENST00000496941 348 ntBASIC2.54□□□□□ -2
NKX3-2P78367 Y_RNA.666-201ENST00000516187 112 ntBASIC2.54□□□□□ -2
NKX3-2P78367 RNU6-126P-201ENST00000516685 103 ntBASIC2.54□□□□□ -2
NKX3-2P78367 SNORA31.15-201ENST00000516771 132 ntBASIC2.54□□□□□ -2
NKX3-2P78367 RNU6-1270P-201ENST00000517128 108 ntBASIC2.54□□□□□ -2
NKX3-2P78367 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.54□□□□□ -2
NKX3-2P78367 AC008507.4-201ENST00000585464 127 ntBASIC2.54□□□□□ -2
NKX3-2P78367 AL365205.2-201ENST00000594586 68 ntBASIC2.54□□□□□ -2
NKX3-2P78367 MIR3914-2-201ENST00000637339 95 ntBASIC2.54□□□□□ -2
NKX3-2P78367 Z82195.2-201ENST00000612348 18351 ntBASIC2.54□□□□□ -2
NKX3-2P78367 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.53□□□□□ -2
NKX3-2P78367 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.53□□□□□ -2
NKX3-2P78367 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC2.53□□□□□ -2
NKX3-2P78367 RNA5SP493-201ENST00000364115 91 ntBASIC2.53□□□□□ -2
NKX3-2P78367 SNORD18B-201ENST00000365659 72 ntBASIC2.53□□□□□ -2
NKX3-2P78367 SNORA64-201ENST00000384674 134 ntBASIC2.53□□□□□ -2
NKX3-2P78367 RNU6-476P-201ENST00000384726 107 ntBASIC2.53□□□□□ -2
NKX3-2P78367 MIR624-201ENST00000385217 97 ntBASIC2.53□□□□□ -2
NKX3-2P78367 RNA5SP127-201ENST00000411051 133 ntBASIC2.53□□□□□ -2
NKX3-2P78367 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC2.53□□□□□ -2
NKX3-2P78367 RPS26P45-201ENST00000471748 340 ntBASIC2.53□□□□□ -2
NKX3-2P78367 RNU6-504P-201ENST00000516568 104 ntBASIC2.53□□□□□ -2
NKX3-2P78367 AC022202.1-201ENST00000613515 211 ntBASIC2.53□□□□□ -2
NKX3-2P78367 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.53□□□□□ -2
NKX3-2P78367 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.53□□□□□ -2
NKX3-2P78367 MTND5P32-201ENST00000560711 1802 ntBASIC2.52□□□□□ -2.01
NKX3-2P78367 RNU6-1164P-201ENST00000364428 107 ntBASIC2.52□□□□□ -2.01
NKX3-2P78367 RNU6-1144P-201ENST00000384247 104 ntBASIC2.52□□□□□ -2.01
NKX3-2P78367 RNU11-5P-201ENST00000391216 129 ntBASIC2.52□□□□□ -2.01
NKX3-2P78367 MIR891A-201ENST00000401237 79 ntBASIC2.52□□□□□ -2.01
NKX3-2P78367 AC099677.2-201ENST00000436385 175 ntBASIC2.52□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 106.2 ms