Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC006441.5-201ENST00000612680 209 ntBASIC2.76□□□□□ -1.97
LIG3P49916 MIR6852-201ENST00000621699 66 ntBASIC2.76□□□□□ -1.97
LIG3P49916 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
LIG3P49916 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
LIG3P49916 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
LIG3P49916 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.75□□□□□ -1.97
LIG3P49916 Y_RNA.114-201ENST00000363265 113 ntBASIC2.75□□□□□ -1.97
LIG3P49916 Y_RNA.353-201ENST00000365440 108 ntBASIC2.75□□□□□ -1.97
LIG3P49916 SNORA80E-201ENST00000384744 137 ntBASIC2.75□□□□□ -1.97
LIG3P49916 MIR518F-201ENST00000384973 87 ntBASIC2.75□□□□□ -1.97
LIG3P49916 HMGN2P39-201ENST00000398005 273 ntBASIC2.75□□□□□ -1.97
LIG3P49916 MIR548O-201ENST00000408583 114 ntBASIC2.75□□□□□ -1.97
LIG3P49916 AL158823.1-201ENST00000418441 478 ntBASIC2.75□□□□□ -1.97
LIG3P49916 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC2.75□□□□□ -1.97
LIG3P49916 AF228730.3-201ENST00000436691 102 ntBASIC2.75□□□□□ -1.97
LIG3P49916 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC2.75□□□□□ -1.97
LIG3P49916 AL158147.1-201ENST00000443970 75 ntBASIC2.75□□□□□ -1.97
LIG3P49916 SNORA59A-201ENST00000459326 152 ntBASIC2.75□□□□□ -1.97
LIG3P49916 RNU5E-3P-201ENST00000515913 68 ntBASIC2.75□□□□□ -1.97
LIG3P49916 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.75□□□□□ -1.97
LIG3P49916 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
LIG3P49916 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
LIG3P49916 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
LIG3P49916 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
LIG3P49916 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
LIG3P49916 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.74□□□□□ -1.97
LIG3P49916 MIR26A1-201ENST00000362205 77 ntBASIC2.74□□□□□ -1.97
LIG3P49916 RNU6-834P-201ENST00000362367 110 ntBASIC2.74□□□□□ -1.97
LIG3P49916 Y_RNA.280-201ENST00000364765 112 ntBASIC2.74□□□□□ -1.97
LIG3P49916 Y_RNA.563-201ENST00000384707 108 ntBASIC2.74□□□□□ -1.97
LIG3P49916 RN7SKP200-201ENST00000410564 320 ntBASIC2.74□□□□□ -1.97
LIG3P49916 RNA5SP21-201ENST00000410917 96 ntBASIC2.74□□□□□ -1.97
LIG3P49916 SNORD109B-201ENST00000458961 67 ntBASIC2.74□□□□□ -1.97
LIG3P49916 SNORD109A-201ENST00000459128 67 ntBASIC2.74□□□□□ -1.97
LIG3P49916 Y_RNA.712-201ENST00000517011 92 ntBASIC2.74□□□□□ -1.97
LIG3P49916 IGHVIII-67-2-201ENST00000519849 88 ntBASIC2.74□□□□□ -1.97
LIG3P49916 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
LIG3P49916 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
LIG3P49916 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
LIG3P49916 AC062016.1-201ENST00000355719 319 ntBASIC2.73□□□□□ -1.97
LIG3P49916 RNU6-647P-201ENST00000364243 107 ntBASIC2.73□□□□□ -1.97
LIG3P49916 MIR9-1-201ENST00000385198 89 ntBASIC2.73□□□□□ -1.97
LIG3P49916 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC2.73□□□□□ -1.97
LIG3P49916 SNORD77.3-201ENST00000391113 65 ntBASIC2.73□□□□□ -1.97
LIG3P49916 SNORA11.2-201ENST00000408318 127 ntBASIC2.73□□□□□ -1.97
LIG3P49916 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.73□□□□□ -1.97
LIG3P49916 RNU2-52P-201ENST00000410680 190 ntBASIC2.73□□□□□ -1.97
LIG3P49916 RNA5SP270-201ENST00000411361 118 ntBASIC2.73□□□□□ -1.97
LIG3P49916 AC108938.1-201ENST00000451204 136 ntBASIC2.73□□□□□ -1.97
LIG3P49916 RNU6-772P-201ENST00000516042 105 ntBASIC2.73□□□□□ -1.97
LIG3P49916 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
LIG3P49916 MTND5P32-201ENST00000560711 1802 ntBASIC2.72□□□□□ -1.97
LIG3P49916 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC2.72□□□□□ -1.97
LIG3P49916 RNU6-268P-201ENST00000364174 107 ntBASIC2.72□□□□□ -1.97
LIG3P49916 SNORA63D-201ENST00000364359 132 ntBASIC2.72□□□□□ -1.97
LIG3P49916 RNU6-309P-201ENST00000364573 106 ntBASIC2.72□□□□□ -1.97
LIG3P49916 SNORA48.1-201ENST00000390879 135 ntBASIC2.72□□□□□ -1.97
LIG3P49916 RNA5SP210-201ENST00000391034 120 ntBASIC2.72□□□□□ -1.97
LIG3P49916 RNA5SP184-201ENST00000411071 108 ntBASIC2.72□□□□□ -1.97
LIG3P49916 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC2.72□□□□□ -1.97
LIG3P49916 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC2.72□□□□□ -1.97
LIG3P49916 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.72□□□□□ -1.97
LIG3P49916 CYCTP-201ENST00000504253 315 ntBASIC2.72□□□□□ -1.97
LIG3P49916 RNU7-25P-201ENST00000516544 62 ntBASIC2.72□□□□□ -1.97
LIG3P49916 AC133485.4-201ENST00000561835 220 ntBASIC2.72□□□□□ -1.97
LIG3P49916 AC138907.4-201ENST00000570107 226 ntBASIC2.72□□□□□ -1.97
LIG3P49916 AC006023.1-201ENST00000603944 259 ntBASIC2.72□□□□□ -1.97
LIG3P49916 AL022345.2-201ENST00000606307 135 ntBASIC2.72□□□□□ -1.97
LIG3P49916 AC134878.1-201ENST00000619901 243 ntBASIC2.72□□□□□ -1.97
LIG3P49916 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.72□□□□□ -1.97
LIG3P49916 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.72□□□□□ -1.97
LIG3P49916 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.72□□□□□ -1.97
LIG3P49916 Y_RNA.81-201ENST00000362997 102 ntBASIC2.71□□□□□ -1.98
LIG3P49916 RNU6-163P-201ENST00000384396 106 ntBASIC2.71□□□□□ -1.98
LIG3P49916 Y_RNA.525-201ENST00000384570 113 ntBASIC2.71□□□□□ -1.98
LIG3P49916 AL034345.1-201ENST00000407768 123 ntBASIC2.71□□□□□ -1.98
LIG3P49916 SNRPGP14-201ENST00000435400 219 ntBASIC2.71□□□□□ -1.98
LIG3P49916 RNVU1-2-201ENST00000516326 135 ntBASIC2.71□□□□□ -1.98
LIG3P49916 SNORA31.10-201ENST00000516482 106 ntBASIC2.71□□□□□ -1.98
LIG3P49916 MIR5197-201ENST00000583721 112 ntBASIC2.71□□□□□ -1.98
LIG3P49916 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.71□□□□□ -1.98
LIG3P49916 SNORD115-28-201ENST00000363931 81 ntBASIC2.7□□□□□ -1.98
LIG3P49916 Y_RNA.410-201ENST00000383992 113 ntBASIC2.7□□□□□ -1.98
LIG3P49916 RNU6-1056P-201ENST00000383996 107 ntBASIC2.7□□□□□ -1.98
LIG3P49916 SNORD20-201ENST00000384550 80 ntBASIC2.7□□□□□ -1.98
LIG3P49916 MIR520A-201ENST00000384862 85 ntBASIC2.7□□□□□ -1.98
LIG3P49916 HSPE1P9-201ENST00000440046 311 ntBASIC2.7□□□□□ -1.98
LIG3P49916 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC2.7□□□□□ -1.98
LIG3P49916 RNU6-1061P-201ENST00000516530 99 ntBASIC2.7□□□□□ -1.98
LIG3P49916 RNU6-1149P-201ENST00000516810 97 ntBASIC2.7□□□□□ -1.98
LIG3P49916 SNORD14A-201ENST00000606526 91 ntBASIC2.7□□□□□ -1.98
LIG3P49916 ICE2P2-201ENST00000483823 2787 ntBASIC2.7□□□□□ -1.98
LIG3P49916 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.69□□□□□ -1.98
LIG3P49916 RNU6-859P-201ENST00000362728 107 ntBASIC2.69□□□□□ -1.98
LIG3P49916 RNU6-215P-201ENST00000365169 102 ntBASIC2.69□□□□□ -1.98
LIG3P49916 MIR196B-201ENST00000384852 84 ntBASIC2.69□□□□□ -1.98
LIG3P49916 RNU2-7P-201ENST00000410794 178 ntBASIC2.69□□□□□ -1.98
LIG3P49916 UBE2DNL-203ENST00000474922 222 ntBASIC2.69□□□□□ -1.98
LIG3P49916 AC114811.1-201ENST00000507207 168 ntBASIC2.69□□□□□ -1.98
LIG3P49916 RNA5SP236-201ENST00000516169 116 ntBASIC2.69□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 121.1 ms