Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 JPX_2.1-201ENST00000614161 69 ntBASIC1.53□□□□□ -2.16
HOXA1P49639 MIRLET7C-201ENST00000362160 84 ntBASIC1.52□□□□□ -2.17
HOXA1P49639 RNU6-1020P-201ENST00000363684 107 ntBASIC1.52□□□□□ -2.17
HOXA1P49639 SNORA16.1-201ENST00000364597 132 ntBASIC1.52□□□□□ -2.17
HOXA1P49639 MT-TR-201ENST00000387439 65 ntBASIC1.52□□□□□ -2.17
HOXA1P49639 SNORD72-201ENST00000390994 80 ntBASIC1.52□□□□□ -2.17
HOXA1P49639 RNU11-5P-201ENST00000391216 129 ntBASIC1.52□□□□□ -2.17
HOXA1P49639 RNA5SP212-201ENST00000391223 107 ntBASIC1.52□□□□□ -2.17
HOXA1P49639 AL023284.1-201ENST00000403956 276 ntBASIC1.52□□□□□ -2.17
HOXA1P49639 RNU6ATAC15P-201ENST00000408279 121 ntBASIC1.52□□□□□ -2.17
HOXA1P49639 Y_RNA.622-201ENST00000411091 108 ntBASIC1.52□□□□□ -2.17
HOXA1P49639 Y_RNA.793-201ENST00000411222 111 ntBASIC1.52□□□□□ -2.17
HOXA1P49639 SNORA59A-201ENST00000459326 152 ntBASIC1.52□□□□□ -2.17
HOXA1P49639 MIR4778-201ENST00000577635 80 ntBASIC1.52□□□□□ -2.17
HOXA1P49639 SNRPGP19-201ENST00000603826 189 ntBASIC1.52□□□□□ -2.17
HOXA1P49639 AL021707.8-201ENST00000609428 183 ntBASIC1.52□□□□□ -2.17
HOXA1P49639 SNORD48-201ENST00000364953 64 ntBASIC1.51□□□□□ -2.17
HOXA1P49639 SNORD50B-201ENST00000364995 70 ntBASIC1.51□□□□□ -2.17
HOXA1P49639 SNORA67.3-201ENST00000384366 140 ntBASIC1.51□□□□□ -2.17
HOXA1P49639 MIR562-201ENST00000384894 95 ntBASIC1.51□□□□□ -2.17
HOXA1P49639 AL606845.1-201ENST00000404881 255 ntBASIC1.51□□□□□ -2.17
HOXA1P49639 RN7SKP223-201ENST00000410582 62 ntBASIC1.51□□□□□ -2.17
HOXA1P49639 RN7SKP101-201ENST00000411376 320 ntBASIC1.51□□□□□ -2.17
HOXA1P49639 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.51□□□□□ -2.17
HOXA1P49639 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC1.51□□□□□ -2.17
HOXA1P49639 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC1.51□□□□□ -2.17
HOXA1P49639 RNU6-1219P-201ENST00000516143 112 ntBASIC1.51□□□□□ -2.17
HOXA1P49639 RNA5SP481-201ENST00000516814 122 ntBASIC1.51□□□□□ -2.17
HOXA1P49639 SNORA81.3-201ENST00000517283 198 ntBASIC1.51□□□□□ -2.17
HOXA1P49639 AL358944.1-201ENST00000528537 144 ntBASIC1.51□□□□□ -2.17
HOXA1P49639 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC1.51□□□□□ -2.17
HOXA1P49639 MIR4648-201ENST00000580107 72 ntBASIC1.51□□□□□ -2.17
HOXA1P49639 MIR3668-201ENST00000582138 75 ntBASIC1.51□□□□□ -2.17
HOXA1P49639 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.51□□□□□ -2.17
HOXA1P49639 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC1.51□□□□□ -2.17
HOXA1P49639 U8.2-201ENST00000363156 134 ntBASIC1.5□□□□□ -2.17
HOXA1P49639 Y_RNA.182-201ENST00000363880 111 ntBASIC1.5□□□□□ -2.17
HOXA1P49639 Y_RNA.238-201ENST00000364441 102 ntBASIC1.5□□□□□ -2.17
HOXA1P49639 SNORA70B-201ENST00000384210 135 ntBASIC1.5□□□□□ -2.17
HOXA1P49639 RNU6-424P-201ENST00000384367 105 ntBASIC1.5□□□□□ -2.17
HOXA1P49639 Y_RNA.571-201ENST00000384753 98 ntBASIC1.5□□□□□ -2.17
HOXA1P49639 RNU6-131P-201ENST00000391144 107 ntBASIC1.5□□□□□ -2.17
HOXA1P49639 RNA5SP482-201ENST00000391269 118 ntBASIC1.5□□□□□ -2.17
HOXA1P49639 AL034345.1-201ENST00000407768 123 ntBASIC1.5□□□□□ -2.17
HOXA1P49639 SNORA3.2-201ENST00000408221 125 ntBASIC1.5□□□□□ -2.17
HOXA1P49639 AL445646.1-201ENST00000431784 216 ntBASIC1.5□□□□□ -2.17
HOXA1P49639 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC1.5□□□□□ -2.17
HOXA1P49639 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC1.5□□□□□ -2.17
HOXA1P49639 AC005908.1-201ENST00000468701 347 ntBASIC1.5□□□□□ -2.17
HOXA1P49639 AC114811.1-201ENST00000507207 168 ntBASIC1.5□□□□□ -2.17
HOXA1P49639 AC074198.2-201ENST00000508153 258 ntBASIC1.5□□□□□ -2.17
HOXA1P49639 AP002392.1-201ENST00000537692 208 ntBASIC1.5□□□□□ -2.17
HOXA1P49639 AC004792.1-201ENST00000614523 137 ntBASIC1.5□□□□□ -2.17
HOXA1P49639 Y_RNA.7-201ENST00000362352 102 ntBASIC1.49□□□□□ -2.17
HOXA1P49639 RNU6-1084P-201ENST00000362498 107 ntBASIC1.49□□□□□ -2.17
HOXA1P49639 Y_RNA.412-201ENST00000384001 104 ntBASIC1.49□□□□□ -2.17
HOXA1P49639 RNU4-70P-201ENST00000384579 139 ntBASIC1.49□□□□□ -2.17
HOXA1P49639 RNU6-1228P-201ENST00000391014 107 ntBASIC1.49□□□□□ -2.17
HOXA1P49639 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC1.49□□□□□ -2.17
HOXA1P49639 RNA5SP182-201ENST00000516064 82 ntBASIC1.49□□□□□ -2.17
HOXA1P49639 RNU6-861P-201ENST00000516745 106 ntBASIC1.49□□□□□ -2.17
HOXA1P49639 MIR3618-201ENST00000580330 88 ntBASIC1.49□□□□□ -2.17
HOXA1P49639 MIR4713-201ENST00000582691 75 ntBASIC1.49□□□□□ -2.17
HOXA1P49639 Z83818.1-201ENST00000603584 150 ntBASIC1.49□□□□□ -2.17
HOXA1P49639 AC103810.8-201ENST00000607347 118 ntBASIC1.49□□□□□ -2.17
HOXA1P49639 U6.106-201ENST00000636360 105 ntBASIC1.49□□□□□ -2.17
HOXA1P49639 Y_RNA.29-201ENST00000362570 113 ntBASIC1.48□□□□□ -2.17
HOXA1P49639 Y_RNA.150-201ENST00000363562 102 ntBASIC1.48□□□□□ -2.17
HOXA1P49639 RNU6-163P-201ENST00000384396 106 ntBASIC1.48□□□□□ -2.17
HOXA1P49639 MIR616-201ENST00000385293 97 ntBASIC1.48□□□□□ -2.17
HOXA1P49639 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.48□□□□□ -2.17
HOXA1P49639 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.48□□□□□ -2.17
HOXA1P49639 PGBD4P5-201ENST00000445958 426 ntBASIC1.48□□□□□ -2.17
HOXA1P49639 AL138752.1-201ENST00000452964 351 ntBASIC1.48□□□□□ -2.17
HOXA1P49639 RNU7-12P-201ENST00000516030 62 ntBASIC1.48□□□□□ -2.17
HOXA1P49639 RN7SKP164-201ENST00000516138 266 ntBASIC1.48□□□□□ -2.17
HOXA1P49639 SNORD45.4-201ENST00000516629 73 ntBASIC1.48□□□□□ -2.17
HOXA1P49639 RNU7-149P-201ENST00000516739 59 ntBASIC1.48□□□□□ -2.17
HOXA1P49639 SUMO2P16-201ENST00000519475 264 ntBASIC1.48□□□□□ -2.17
HOXA1P49639 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC1.48□□□□□ -2.17
HOXA1P49639 MIR2681-201ENST00000581814 105 ntBASIC1.48□□□□□ -2.17
HOXA1P49639 AC120024.3-201ENST00000603167 156 ntBASIC1.48□□□□□ -2.17
HOXA1P49639 SNORA28-201ENST00000606769 126 ntBASIC1.48□□□□□ -2.17
HOXA1P49639 AC108706.1-201ENST00000611053 297 ntBASIC1.48□□□□□ -2.17
HOXA1P49639 uc_338.4-201ENST00000616635 176 ntBASIC1.48□□□□□ -2.17
HOXA1P49639 AC106754.2-201ENST00000623006 233 ntBASIC1.48□□□□□ -2.17
HOXA1P49639 SNORD3E-202ENST00000627253 216 ntBASIC1.48□□□□□ -2.17
HOXA1P49639 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.48□□□□□ -2.17
HOXA1P49639 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.47□□□□□ -2.17
HOXA1P49639 RNU6-414P-201ENST00000363705 104 ntBASIC1.47□□□□□ -2.17
HOXA1P49639 RNU6-682P-201ENST00000363843 106 ntBASIC1.47□□□□□ -2.17
HOXA1P49639 Y_RNA.233-201ENST00000364407 101 ntBASIC1.47□□□□□ -2.17
HOXA1P49639 U8.5-201ENST00000364528 136 ntBASIC1.47□□□□□ -2.17
HOXA1P49639 RNU6-950P-201ENST00000384651 107 ntBASIC1.47□□□□□ -2.17
HOXA1P49639 RNU6-360P-201ENST00000390944 104 ntBASIC1.47□□□□□ -2.17
HOXA1P49639 FTH1P12-201ENST00000432137 551 ntBASIC1.47□□□□□ -2.17
HOXA1P49639 SNRPGP8-201ENST00000454064 226 ntBASIC1.47□□□□□ -2.17
HOXA1P49639 HMGN2P23-201ENST00000456759 269 ntBASIC1.47□□□□□ -2.17
HOXA1P49639 Y_RNA.797-201ENST00000515977 94 ntBASIC1.47□□□□□ -2.17
HOXA1P49639 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC1.47□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 178.3 ms