Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 SNORD89-201ENST00000390981 114 ntBASIC0.54□□□□□ -2.32
RFX3P48380 SNORD99-201ENST00000408612 74 ntBASIC0.54□□□□□ -2.32
RFX3P48380 RNU6-855P-201ENST00000410395 104 ntBASIC0.54□□□□□ -2.32
RFX3P48380 AP003484.1-201ENST00000530974 250 ntBASIC0.54□□□□□ -2.32
RFX3P48380 MIR4423-201ENST00000580922 80 ntBASIC0.54□□□□□ -2.32
RFX3P48380 AC011476.5-201ENST00000615594 130 ntBASIC0.54□□□□□ -2.32
RFX3P48380 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.54□□□□□ -2.32
RFX3P48380 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.54□□□□□ -2.32
RFX3P48380 RNY3P11-201ENST00000364153 102 ntBASIC0.53□□□□□ -2.32
RFX3P48380 Y_RNA.310-201ENST00000365063 113 ntBASIC0.53□□□□□ -2.32
RFX3P48380 RNU6-1067P-201ENST00000384752 107 ntBASIC0.53□□□□□ -2.32
RFX3P48380 AC098614.3-201ENST00000438957 440 ntBASIC0.53□□□□□ -2.32
RFX3P48380 AL392103.1-201ENST00000447000 198 ntBASIC0.53□□□□□ -2.32
RFX3P48380 RNU6-1132P-201ENST00000459214 107 ntBASIC0.53□□□□□ -2.32
RFX3P48380 RNU4-54P-201ENST00000516428 129 ntBASIC0.53□□□□□ -2.32
RFX3P48380 POLR3GP1-201ENST00000594073 261 ntBASIC0.53□□□□□ -2.32
RFX3P48380 AP003357.1-201ENST00000604497 148 ntBASIC0.53□□□□□ -2.32
RFX3P48380 AL138825.1-201ENST00000618587 192 ntBASIC0.53□□□□□ -2.32
RFX3P48380 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.52□□□□□ -2.33
RFX3P48380 AC134026.1-201ENST00000623249 2239 ntBASIC0.52□□□□□ -2.33
RFX3P48380 Y_RNA.203-201ENST00000364106 102 ntBASIC0.52□□□□□ -2.33
RFX3P48380 Y_RNA.242-201ENST00000364473 110 ntBASIC0.52□□□□□ -2.33
RFX3P48380 Y_RNA.259-201ENST00000364619 101 ntBASIC0.52□□□□□ -2.33
RFX3P48380 RNU6-1040P-201ENST00000383974 107 ntBASIC0.52□□□□□ -2.33
RFX3P48380 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC0.52□□□□□ -2.33
RFX3P48380 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC0.52□□□□□ -2.33
RFX3P48380 RNU6-830P-201ENST00000516353 107 ntBASIC0.52□□□□□ -2.33
RFX3P48380 RNU6-966P-201ENST00000516479 104 ntBASIC0.52□□□□□ -2.33
RFX3P48380 AC036111.3-201ENST00000526389 112 ntBASIC0.52□□□□□ -2.33
RFX3P48380 AC006600.1-201ENST00000572529 153 ntBASIC0.52□□□□□ -2.33
RFX3P48380 Y_RNA.772-201ENST00000606692 102 ntBASIC0.52□□□□□ -2.33
RFX3P48380 JPX_2.1-201ENST00000614161 69 ntBASIC0.52□□□□□ -2.33
RFX3P48380 AC091925.1-201ENST00000623204 462 ntBASIC0.52□□□□□ -2.33
RFX3P48380 AC008133.2-201ENST00000624540 351 ntBASIC0.52□□□□□ -2.33
RFX3P48380 MIR4251-201ENST00000635819 61 ntBASIC0.52□□□□□ -2.33
RFX3P48380 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.52□□□□□ -2.33
RFX3P48380 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC0.52□□□□□ -2.33
RFX3P48380 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.51□□□□□ -2.33
RFX3P48380 SNORD113.3-201ENST00000364630 78 ntBASIC0.51□□□□□ -2.33
RFX3P48380 Y_RNA.384-201ENST00000383909 102 ntBASIC0.51□□□□□ -2.33
RFX3P48380 RNU6-442P-201ENST00000383968 104 ntBASIC0.51□□□□□ -2.33
RFX3P48380 Y_RNA.428-201ENST00000384078 102 ntBASIC0.51□□□□□ -2.33
RFX3P48380 Y_RNA.505-201ENST00000384489 102 ntBASIC0.51□□□□□ -2.33
RFX3P48380 MIR936-201ENST00000401264 98 ntBASIC0.51□□□□□ -2.33
RFX3P48380 Y_RNA.619-201ENST00000410951 90 ntBASIC0.51□□□□□ -2.33
RFX3P48380 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC0.51□□□□□ -2.33
RFX3P48380 RNU6-1007P-201ENST00000516586 107 ntBASIC0.51□□□□□ -2.33
RFX3P48380 RNU6-229P-201ENST00000516614 102 ntBASIC0.51□□□□□ -2.33
RFX3P48380 SNORA20.3-201ENST00000516880 132 ntBASIC0.51□□□□□ -2.33
RFX3P48380 RNU6-699P-201ENST00000517081 110 ntBASIC0.51□□□□□ -2.33
RFX3P48380 AC093027.1-201ENST00000546698 429 ntBASIC0.51□□□□□ -2.33
RFX3P48380 MIR2681-201ENST00000581814 105 ntBASIC0.51□□□□□ -2.33
RFX3P48380 AC005730.3-201ENST00000583067 366 ntBASIC0.51□□□□□ -2.33
RFX3P48380 MIR5188-201ENST00000583467 113 ntBASIC0.51□□□□□ -2.33
RFX3P48380 AL512605.2-201ENST00000592972 256 ntBASIC0.51□□□□□ -2.33
RFX3P48380 AL355073.2-201ENST00000612106 557 ntBASIC0.51□□□□□ -2.33
RFX3P48380 uc_338.17-201ENST00000619633 179 ntBASIC0.51□□□□□ -2.33
RFX3P48380 7SK.10-201ENST00000621414 298 ntBASIC0.51□□□□□ -2.33
RFX3P48380 AL589743.1-201ENST00000551932 2712 ntBASIC0.51□□□□□ -2.33
RFX3P48380 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.5□□□□□ -2.33
RFX3P48380 RNY4P36-201ENST00000391116 96 ntBASIC0.5□□□□□ -2.33
RFX3P48380 RNU6-994P-201ENST00000410507 111 ntBASIC0.5□□□□□ -2.33
RFX3P48380 RNU6-1304P-201ENST00000411374 106 ntBASIC0.5□□□□□ -2.33
RFX3P48380 AC138393.2-201ENST00000414742 246 ntBASIC0.5□□□□□ -2.33
RFX3P48380 AC092628.1-201ENST00000436250 252 ntBASIC0.5□□□□□ -2.33
RFX3P48380 AC091951.2-201ENST00000500762 203 ntBASIC0.5□□□□□ -2.33
RFX3P48380 RNA5SP121-201ENST00000516537 101 ntBASIC0.5□□□□□ -2.33
RFX3P48380 SNORD116.3-201ENST00000517176 78 ntBASIC0.5□□□□□ -2.33
RFX3P48380 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC0.5□□□□□ -2.33
RFX3P48380 RNU6-94P-201ENST00000607728 107 ntBASIC0.5□□□□□ -2.33
RFX3P48380 MIR4272-201ENST00000635924 64 ntBASIC0.5□□□□□ -2.33
RFX3P48380 Y_RNA.331-201ENST00000365267 102 ntBASIC0.49□□□□□ -2.33
RFX3P48380 RNU6-708P-201ENST00000384217 107 ntBASIC0.49□□□□□ -2.33
RFX3P48380 MIR802-201ENST00000390235 94 ntBASIC0.49□□□□□ -2.33
RFX3P48380 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.49□□□□□ -2.33
RFX3P48380 RNU6-613P-201ENST00000410412 108 ntBASIC0.49□□□□□ -2.33
RFX3P48380 AC005534.2-201ENST00000431047 433 ntBASIC0.49□□□□□ -2.33
RFX3P48380 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC0.49□□□□□ -2.33
RFX3P48380 AL157398.1-201ENST00000452981 186 ntBASIC0.49□□□□□ -2.33
RFX3P48380 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC0.49□□□□□ -2.33
RFX3P48380 RNA5SP436-201ENST00000516020 115 ntBASIC0.49□□□□□ -2.33
RFX3P48380 RNU7-115P-201ENST00000516433 55 ntBASIC0.49□□□□□ -2.33
RFX3P48380 MIR2115-201ENST00000516657 100 ntBASIC0.49□□□□□ -2.33
RFX3P48380 Y_RNA.713-201ENST00000517013 96 ntBASIC0.49□□□□□ -2.33
RFX3P48380 AC024405.2-202ENST00000532731 184 ntBASIC0.49□□□□□ -2.33
RFX3P48380 AC127455.1-201ENST00000565496 145 ntBASIC0.49□□□□□ -2.33
RFX3P48380 MIR548AR-201ENST00000582191 57 ntBASIC0.49□□□□□ -2.33
RFX3P48380 Pinc.1-201ENST00000616452 154 ntBASIC0.49□□□□□ -2.33
RFX3P48380 AC099654.14-201ENST00000638599 341 ntBASIC0.49□□□□□ -2.33
RFX3P48380 Y_RNA.142-201ENST00000363491 102 ntBASIC0.48□□□□□ -2.33
RFX3P48380 Y_RNA.148-201ENST00000363557 117 ntBASIC0.48□□□□□ -2.33
RFX3P48380 Y_RNA.463-201ENST00000384271 102 ntBASIC0.48□□□□□ -2.33
RFX3P48380 MIR1302-7-201ENST00000408841 72 ntBASIC0.48□□□□□ -2.33
RFX3P48380 AC096644.2-201ENST00000429278 159 ntBASIC0.48□□□□□ -2.33
RFX3P48380 HMGN1P10-201ENST00000474557 553 ntBASIC0.48□□□□□ -2.33
RFX3P48380 RPL23AP54-201ENST00000495129 419 ntBASIC0.48□□□□□ -2.33
RFX3P48380 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.48□□□□□ -2.33
RFX3P48380 Y_RNA.718-201ENST00000517110 102 ntBASIC0.48□□□□□ -2.33
RFX3P48380 AL355375.2-201ENST00000574825 175 ntBASIC0.48□□□□□ -2.33
RFX3P48380 MIR4711-201ENST00000578274 70 ntBASIC0.48□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 121.7 ms