Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 RNA5SP109-201ENST00000391010 116 ntBASIC1.92□□□□□ -2.1
CIITAP33076 RNA5SP323-201ENST00000391094 133 ntBASIC1.92□□□□□ -2.1
CIITAP33076 Y_RNA.793-201ENST00000411222 111 ntBASIC1.92□□□□□ -2.1
CIITAP33076 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.92□□□□□ -2.1
CIITAP33076 RNU6-437P-201ENST00000459408 95 ntBASIC1.92□□□□□ -2.1
CIITAP33076 RNU6-1291P-201ENST00000516591 104 ntBASIC1.92□□□□□ -2.1
CIITAP33076 AL021707.8-201ENST00000609428 183 ntBASIC1.92□□□□□ -2.1
CIITAP33076 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.92□□□□□ -2.1
CIITAP33076 SNORA1B-201ENST00000362535 133 ntBASIC1.91□□□□□ -2.1
CIITAP33076 RNU6-1020P-201ENST00000363684 107 ntBASIC1.91□□□□□ -2.1
CIITAP33076 SNORA63D-201ENST00000364359 132 ntBASIC1.91□□□□□ -2.1
CIITAP33076 RNU6-1019P-201ENST00000364424 107 ntBASIC1.91□□□□□ -2.1
CIITAP33076 RNU6-296P-201ENST00000384608 107 ntBASIC1.91□□□□□ -2.1
CIITAP33076 MIR520G-201ENST00000385064 90 ntBASIC1.91□□□□□ -2.1
CIITAP33076 SNORA12.1-201ENST00000390873 148 ntBASIC1.91□□□□□ -2.1
CIITAP33076 RN7SKP51-201ENST00000410781 304 ntBASIC1.91□□□□□ -2.1
CIITAP33076 PIGPP3-201ENST00000425307 415 ntBASIC1.91□□□□□ -2.1
CIITAP33076 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC1.91□□□□□ -2.1
CIITAP33076 SNORA25.15-201ENST00000516487 89 ntBASIC1.91□□□□□ -2.1
CIITAP33076 AP002392.1-201ENST00000537692 208 ntBASIC1.91□□□□□ -2.1
CIITAP33076 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.91□□□□□ -2.1
CIITAP33076 MIR3198-2-201ENST00000577868 80 ntBASIC1.91□□□□□ -2.1
CIITAP33076 MIR5688-201ENST00000580619 83 ntBASIC1.91□□□□□ -2.1
CIITAP33076 AC012493.3-201ENST00000604494 112 ntBASIC1.91□□□□□ -2.1
CIITAP33076 Y_RNA.4-201ENST00000362333 112 ntBASIC1.9□□□□□ -2.11
CIITAP33076 RNU6-112P-201ENST00000363599 104 ntBASIC1.9□□□□□ -2.11
CIITAP33076 Y_RNA.164-201ENST00000363709 102 ntBASIC1.9□□□□□ -2.11
CIITAP33076 Y_RNA.796-201ENST00000364268 102 ntBASIC1.9□□□□□ -2.11
CIITAP33076 Y_RNA.229-201ENST00000364347 113 ntBASIC1.9□□□□□ -2.11
CIITAP33076 Y_RNA.233-201ENST00000364407 101 ntBASIC1.9□□□□□ -2.11
CIITAP33076 Y_RNA.799-201ENST00000364992 102 ntBASIC1.9□□□□□ -2.11
CIITAP33076 RNU4-17P-201ENST00000365598 141 ntBASIC1.9□□□□□ -2.11
CIITAP33076 Y_RNA.571-201ENST00000384753 98 ntBASIC1.9□□□□□ -2.11
CIITAP33076 MT-TT-201ENST00000387460 66 ntBASIC1.9□□□□□ -2.11
CIITAP33076 SNORA31.10-201ENST00000516482 106 ntBASIC1.9□□□□□ -2.11
CIITAP33076 RNU6-861P-201ENST00000516745 106 ntBASIC1.9□□□□□ -2.11
CIITAP33076 RNU6-182P-201ENST00000516970 105 ntBASIC1.9□□□□□ -2.11
CIITAP33076 AC069114.2-201ENST00000604699 304 ntBASIC1.9□□□□□ -2.11
CIITAP33076 AC098479.1-201ENST00000609225 154 ntBASIC1.9□□□□□ -2.11
CIITAP33076 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
CIITAP33076 Y_RNA.140-201ENST00000363474 103 ntBASIC1.89□□□□□ -2.11
CIITAP33076 Y_RNA.150-201ENST00000363562 102 ntBASIC1.89□□□□□ -2.11
CIITAP33076 Y_RNA.203-201ENST00000364106 102 ntBASIC1.89□□□□□ -2.11
CIITAP33076 Y_RNA.267-201ENST00000364679 109 ntBASIC1.89□□□□□ -2.11
CIITAP33076 RNA5SP190-201ENST00000365222 118 ntBASIC1.89□□□□□ -2.11
CIITAP33076 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.89□□□□□ -2.11
CIITAP33076 AC074198.2-201ENST00000508153 258 ntBASIC1.89□□□□□ -2.11
CIITAP33076 RNU6-1053P-201ENST00000515930 101 ntBASIC1.89□□□□□ -2.11
CIITAP33076 RNU6-1219P-201ENST00000516143 112 ntBASIC1.89□□□□□ -2.11
CIITAP33076 MIR4724-201ENST00000579485 89 ntBASIC1.89□□□□□ -2.11
CIITAP33076 AC072026.1-201ENST00000605023 201 ntBASIC1.89□□□□□ -2.11
CIITAP33076 RNU2-4P-201ENST00000606190 192 ntBASIC1.89□□□□□ -2.11
CIITAP33076 MIR502-201ENST00000606349 86 ntBASIC1.89□□□□□ -2.11
CIITAP33076 WWP1P1-201ENST00000466609 2769 ntBASIC1.89□□□□□ -2.11
CIITAP33076 MIR337-201ENST00000362281 93 ntBASIC1.88□□□□□ -2.11
CIITAP33076 Y_RNA.7-201ENST00000362352 102 ntBASIC1.88□□□□□ -2.11
CIITAP33076 RNU6-661P-201ENST00000362409 107 ntBASIC1.88□□□□□ -2.11
CIITAP33076 RNU6-1209P-201ENST00000363655 107 ntBASIC1.88□□□□□ -2.11
CIITAP33076 RNA5SP100-201ENST00000410903 110 ntBASIC1.88□□□□□ -2.11
CIITAP33076 RNA5SP59-201ENST00000410922 110 ntBASIC1.88□□□□□ -2.11
CIITAP33076 RN7SKP101-201ENST00000411376 320 ntBASIC1.88□□□□□ -2.11
CIITAP33076 RPL31P63-201ENST00000422565 375 ntBASIC1.88□□□□□ -2.11
CIITAP33076 AC069257.2-201ENST00000441819 155 ntBASIC1.88□□□□□ -2.11
CIITAP33076 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC1.88□□□□□ -2.11
CIITAP33076 AC233266.1-201ENST00000454518 96 ntBASIC1.88□□□□□ -2.11
CIITAP33076 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.88□□□□□ -2.11
CIITAP33076 RNA5SP437-201ENST00000517249 129 ntBASIC1.88□□□□□ -2.11
CIITAP33076 AL358944.1-201ENST00000528537 144 ntBASIC1.88□□□□□ -2.11
CIITAP33076 AP000942.3-201ENST00000603702 160 ntBASIC1.88□□□□□ -2.11
CIITAP33076 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.88□□□□□ -2.11
CIITAP33076 AC242852.1-201ENST00000612151 96 ntBASIC1.88□□□□□ -2.11
CIITAP33076 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.88□□□□□ -2.11
CIITAP33076 AC244015.1-201ENST00000622301 99 ntBASIC1.88□□□□□ -2.11
CIITAP33076 RNU1-17P-201ENST00000363022 152 ntBASIC1.87□□□□□ -2.11
CIITAP33076 Y_RNA.253-201ENST00000364562 112 ntBASIC1.87□□□□□ -2.11
CIITAP33076 SNORA4.2-201ENST00000365313 147 ntBASIC1.87□□□□□ -2.11
CIITAP33076 Y_RNA.412-201ENST00000384001 104 ntBASIC1.87□□□□□ -2.11
CIITAP33076 RNU6-886P-201ENST00000384319 105 ntBASIC1.87□□□□□ -2.11
CIITAP33076 Y_RNA.555-201ENST00000384673 110 ntBASIC1.87□□□□□ -2.11
CIITAP33076 MIR616-201ENST00000385293 97 ntBASIC1.87□□□□□ -2.11
CIITAP33076 HSPE1P9-201ENST00000440046 311 ntBASIC1.87□□□□□ -2.11
CIITAP33076 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.87□□□□□ -2.11
CIITAP33076 SNORD11-201ENST00000459124 84 ntBASIC1.87□□□□□ -2.11
CIITAP33076 RNU7-94P-201ENST00000459576 63 ntBASIC1.87□□□□□ -2.11
CIITAP33076 AC024614.2-201ENST00000577584 372 ntBASIC1.87□□□□□ -2.11
CIITAP33076 MIR8054-201ENST00000620877 86 ntBASIC1.87□□□□□ -2.11
CIITAP33076 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC1.87□□□□□ -2.11
CIITAP33076 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.87□□□□□ -2.11
CIITAP33076 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC1.86□□□□□ -2.11
CIITAP33076 MIR367-201ENST00000362299 68 ntBASIC1.86□□□□□ -2.11
CIITAP33076 Y_RNA.121-201ENST00000363309 113 ntBASIC1.86□□□□□ -2.11
CIITAP33076 RNU4-41P-201ENST00000364426 143 ntBASIC1.86□□□□□ -2.11
CIITAP33076 Y_RNA.240-201ENST00000364469 95 ntBASIC1.86□□□□□ -2.11
CIITAP33076 AC245047.3-201ENST00000429428 127 ntBASIC1.86□□□□□ -2.11
CIITAP33076 FTH1P12-201ENST00000432137 551 ntBASIC1.86□□□□□ -2.11
CIITAP33076 AC245047.8-201ENST00000456455 284 ntBASIC1.86□□□□□ -2.11
CIITAP33076 NDUFA4P2-201ENST00000489989 244 ntBASIC1.86□□□□□ -2.11
CIITAP33076 AC008834.1-201ENST00000511612 175 ntBASIC1.86□□□□□ -2.11
CIITAP33076 RN7SKP164-201ENST00000516138 266 ntBASIC1.86□□□□□ -2.11
CIITAP33076 RNU6-561P-201ENST00000516222 102 ntBASIC1.86□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 105.4 ms