Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC1.74□□□□□ -2.13
HOXD3P31249 RNA5SP276-201ENST00000362580 94 ntBASIC1.74□□□□□ -2.13
HOXD3P31249 RNU6-112P-201ENST00000363599 104 ntBASIC1.74□□□□□ -2.13
HOXD3P31249 RNY3P5-201ENST00000384127 102 ntBASIC1.74□□□□□ -2.13
HOXD3P31249 Y_RNA.486-201ENST00000384398 107 ntBASIC1.74□□□□□ -2.13
HOXD3P31249 MIR522-201ENST00000385071 87 ntBASIC1.74□□□□□ -2.13
HOXD3P31249 SNORD72-201ENST00000390994 80 ntBASIC1.74□□□□□ -2.13
HOXD3P31249 RNU11-5P-201ENST00000391216 129 ntBASIC1.74□□□□□ -2.13
HOXD3P31249 AL158823.1-201ENST00000418441 478 ntBASIC1.74□□□□□ -2.13
HOXD3P31249 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.74□□□□□ -2.13
HOXD3P31249 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.74□□□□□ -2.13
HOXD3P31249 RNA5SP233-201ENST00000459153 113 ntBASIC1.74□□□□□ -2.13
HOXD3P31249 RNU7-200P-201ENST00000516105 62 ntBASIC1.74□□□□□ -2.13
HOXD3P31249 RNU6-1116P-201ENST00000517269 99 ntBASIC1.74□□□□□ -2.13
HOXD3P31249 HMSD-204ENST00000526932 162 ntTSL 3 BASIC1.74□□□□□ -2.13
HOXD3P31249 AL358944.1-201ENST00000528537 144 ntBASIC1.74□□□□□ -2.13
HOXD3P31249 MIR4287-201ENST00000579398 78 ntBASIC1.74□□□□□ -2.13
HOXD3P31249 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.74□□□□□ -2.13
HOXD3P31249 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC1.73□□□□□ -2.13
HOXD3P31249 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
HOXD3P31249 Y_RNA.91-201ENST00000363042 107 ntBASIC1.73□□□□□ -2.13
HOXD3P31249 SNORA63D-201ENST00000364359 132 ntBASIC1.73□□□□□ -2.13
HOXD3P31249 Y_RNA.265-201ENST00000364677 108 ntBASIC1.73□□□□□ -2.13
HOXD3P31249 SNORD50B-201ENST00000364995 70 ntBASIC1.73□□□□□ -2.13
HOXD3P31249 RNU6-643P-201ENST00000384018 107 ntBASIC1.73□□□□□ -2.13
HOXD3P31249 RNU6-296P-201ENST00000384608 107 ntBASIC1.73□□□□□ -2.13
HOXD3P31249 SNORA64-201ENST00000384674 134 ntBASIC1.73□□□□□ -2.13
HOXD3P31249 RNU6-239P-201ENST00000390990 99 ntBASIC1.73□□□□□ -2.13
HOXD3P31249 RPL23AP63-201ENST00000498752 471 ntBASIC1.73□□□□□ -2.13
HOXD3P31249 SNORD77.4-201ENST00000516158 81 ntBASIC1.73□□□□□ -2.13
HOXD3P31249 RNU6ATAC9P-201ENST00000516210 116 ntBASIC1.73□□□□□ -2.13
HOXD3P31249 RNA5SP402-201ENST00000517148 110 ntBASIC1.73□□□□□ -2.13
HOXD3P31249 MIR6132-201ENST00000622083 109 ntBASIC1.73□□□□□ -2.13
HOXD3P31249 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.72□□□□□ -2.13
HOXD3P31249 RNU6-151P-201ENST00000364158 107 ntBASIC1.72□□□□□ -2.13
HOXD3P31249 RNU6-1336P-201ENST00000383886 109 ntBASIC1.72□□□□□ -2.13
HOXD3P31249 RNU6-746P-201ENST00000384112 109 ntBASIC1.72□□□□□ -2.13
HOXD3P31249 SNORA67.3-201ENST00000384366 140 ntBASIC1.72□□□□□ -2.13
HOXD3P31249 SNORA80E-201ENST00000384744 137 ntBASIC1.72□□□□□ -2.13
HOXD3P31249 MIR221-201ENST00000385135 110 ntBASIC1.72□□□□□ -2.13
HOXD3P31249 Y_RNA.580-201ENST00000391004 95 ntBASIC1.72□□□□□ -2.13
HOXD3P31249 RNU2-7P-201ENST00000410794 178 ntBASIC1.72□□□□□ -2.13
HOXD3P31249 RNA5SP100-201ENST00000410903 110 ntBASIC1.72□□□□□ -2.13
HOXD3P31249 RNA5SP59-201ENST00000410922 110 ntBASIC1.72□□□□□ -2.13
HOXD3P31249 STAG3L5P-204ENST00000443759 179 ntBASIC1.72□□□□□ -2.13
HOXD3P31249 AC023449.1-201ENST00000454464 154 ntBASIC1.72□□□□□ -2.13
HOXD3P31249 OR9P1P-201ENST00000496431 281 ntBASIC1.72□□□□□ -2.13
HOXD3P31249 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC1.72□□□□□ -2.13
HOXD3P31249 MRPS17P9-201ENST00000511924 393 ntBASIC1.72□□□□□ -2.13
HOXD3P31249 RNA5SP272-201ENST00000516095 111 ntBASIC1.72□□□□□ -2.13
HOXD3P31249 RNU6-1299P-201ENST00000516316 100 ntBASIC1.72□□□□□ -2.13
HOXD3P31249 RNU7-121P-201ENST00000516604 62 ntBASIC1.72□□□□□ -2.13
HOXD3P31249 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.72□□□□□ -2.13
HOXD3P31249 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.72□□□□□ -2.13
HOXD3P31249 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.72□□□□□ -2.13
HOXD3P31249 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.72□□□□□ -2.13
HOXD3P31249 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.72□□□□□ -2.13
HOXD3P31249 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
HOXD3P31249 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC1.72□□□□□ -2.13
HOXD3P31249 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC1.71□□□□□ -2.13
HOXD3P31249 RNU6-449P-201ENST00000383914 107 ntBASIC1.71□□□□□ -2.14
HOXD3P31249 Y_RNA.432-201ENST00000384087 111 ntBASIC1.71□□□□□ -2.14
HOXD3P31249 RNU6-768P-201ENST00000384683 107 ntBASIC1.71□□□□□ -2.14
HOXD3P31249 RNU6-131P-201ENST00000391144 107 ntBASIC1.71□□□□□ -2.14
HOXD3P31249 FTH1P12-201ENST00000432137 551 ntBASIC1.71□□□□□ -2.14
HOXD3P31249 AC005840.1-201ENST00000498412 377 ntBASIC1.71□□□□□ -2.14
HOXD3P31249 SNORD116-25-201ENST00000516517 92 ntBASIC1.71□□□□□ -2.14
HOXD3P31249 SCARNA16.3-201ENST00000516595 184 ntBASIC1.71□□□□□ -2.14
HOXD3P31249 RNU6-548P-201ENST00000517083 115 ntBASIC1.71□□□□□ -2.14
HOXD3P31249 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC1.71□□□□□ -2.14
HOXD3P31249 AL627230.6-201ENST00000611129 280 ntBASIC1.71□□□□□ -2.14
HOXD3P31249 AL359851.1-201ENST00000569460 4997 ntBASIC1.71□□□□□ -2.14
HOXD3P31249 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC1.71□□□□□ -2.14
HOXD3P31249 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC1.71□□□□□ -2.14
HOXD3P31249 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.7□□□□□ -2.14
HOXD3P31249 RNU6-1084P-201ENST00000362498 107 ntBASIC1.7□□□□□ -2.14
HOXD3P31249 RNY1P11-201ENST00000363759 113 ntBASIC1.7□□□□□ -2.14
HOXD3P31249 Y_RNA.634-201ENST00000364811 113 ntBASIC1.7□□□□□ -2.14
HOXD3P31249 MIR520A-201ENST00000384862 85 ntBASIC1.7□□□□□ -2.14
HOXD3P31249 RNU4-43P-201ENST00000410628 137 ntBASIC1.7□□□□□ -2.14
HOXD3P31249 AC107027.2-201ENST00000512197 115 ntBASIC1.7□□□□□ -2.14
HOXD3P31249 RNU6-197P-201ENST00000516680 100 ntBASIC1.7□□□□□ -2.14
HOXD3P31249 MIR514B-201ENST00000516774 80 ntBASIC1.7□□□□□ -2.14
HOXD3P31249 Y_RNA.703-201ENST00000516846 111 ntBASIC1.7□□□□□ -2.14
HOXD3P31249 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.7□□□□□ -2.14
HOXD3P31249 AC008507.4-201ENST00000585464 127 ntBASIC1.7□□□□□ -2.14
HOXD3P31249 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC1.69□□□□□ -2.14
HOXD3P31249 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC1.69□□□□□ -2.14
HOXD3P31249 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC1.69□□□□□ -2.14
HOXD3P31249 MIRLET7C-201ENST00000362160 84 ntBASIC1.69□□□□□ -2.14
HOXD3P31249 RNU6-482P-201ENST00000391068 107 ntBASIC1.69□□□□□ -2.14
HOXD3P31249 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.69□□□□□ -2.14
HOXD3P31249 RNU2-70P-201ENST00000410718 179 ntBASIC1.69□□□□□ -2.14
HOXD3P31249 RNU2-55P-201ENST00000411146 174 ntBASIC1.69□□□□□ -2.14
HOXD3P31249 CALM2P4-201ENST00000430810 426 ntBASIC1.69□□□□□ -2.14
HOXD3P31249 Y_RNA.666-201ENST00000516187 112 ntBASIC1.69□□□□□ -2.14
HOXD3P31249 SNORA31.17-201ENST00000516953 127 ntBASIC1.69□□□□□ -2.14
HOXD3P31249 MIR378D2-201ENST00000580636 98 ntBASIC1.69□□□□□ -2.14
HOXD3P31249 AL353997.5-201ENST00000618886 171 ntBASIC1.69□□□□□ -2.14
HOXD3P31249 AC009831.4-201ENST00000620744 325 ntBASIC1.69□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 107.1 ms