Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 RNU1-96P-201ENST00000364163 162 ntBASIC1.81□□□□□ -2.12
LDB3O75112 Y_RNA.796-201ENST00000364268 102 ntBASIC1.81□□□□□ -2.12
LDB3O75112 Y_RNA.799-201ENST00000364992 102 ntBASIC1.81□□□□□ -2.12
LDB3O75112 RNU6-484P-201ENST00000384016 107 ntBASIC1.81□□□□□ -2.12
LDB3O75112 SNORA72-201ENST00000384339 132 ntBASIC1.81□□□□□ -2.12
LDB3O75112 MIR515-2-201ENST00000384883 83 ntBASIC1.81□□□□□ -2.12
LDB3O75112 MIR515-1-201ENST00000384884 83 ntBASIC1.81□□□□□ -2.12
LDB3O75112 RNU6-588P-201ENST00000410281 105 ntBASIC1.81□□□□□ -2.12
LDB3O75112 RNU6-1186P-201ENST00000410429 97 ntBASIC1.81□□□□□ -2.12
LDB3O75112 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC1.81□□□□□ -2.12
LDB3O75112 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC1.81□□□□□ -2.12
LDB3O75112 SNORD11-201ENST00000459124 84 ntBASIC1.81□□□□□ -2.12
LDB3O75112 RNA5SP233-201ENST00000459153 113 ntBASIC1.81□□□□□ -2.12
LDB3O75112 UBL5P3-201ENST00000475112 231 ntBASIC1.81□□□□□ -2.12
LDB3O75112 AC092991.1-201ENST00000477176 376 ntBASIC1.81□□□□□ -2.12
LDB3O75112 RNU6-971P-201ENST00000516920 106 ntBASIC1.81□□□□□ -2.12
LDB3O75112 RNU7-116P-201ENST00000516940 62 ntBASIC1.81□□□□□ -2.12
LDB3O75112 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC1.81□□□□□ -2.12
LDB3O75112 AC011604.1-201ENST00000545978 196 ntBASIC1.81□□□□□ -2.12
LDB3O75112 MIR5688-201ENST00000580619 83 ntBASIC1.81□□□□□ -2.12
LDB3O75112 U1.36-201ENST00000620684 176 ntBASIC1.81□□□□□ -2.12
LDB3O75112 AC091895.1-201ENST00000624494 256 ntBASIC1.81□□□□□ -2.12
LDB3O75112 AC022513.1-201ENST00000624512 117 ntBASIC1.81□□□□□ -2.12
LDB3O75112 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
LDB3O75112 AC010332.2-201ENST00000613083 1904 ntBASIC1.81□□□□□ -2.12
LDB3O75112 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.8□□□□□ -2.12
LDB3O75112 Y_RNA.91-201ENST00000363042 107 ntBASIC1.8□□□□□ -2.12
LDB3O75112 RNU4-13P-201ENST00000364019 141 ntBASIC1.8□□□□□ -2.12
LDB3O75112 Y_RNA.203-201ENST00000364106 102 ntBASIC1.8□□□□□ -2.12
LDB3O75112 Y_RNA.218-201ENST00000364218 104 ntBASIC1.8□□□□□ -2.12
LDB3O75112 Y_RNA.343-201ENST00000365354 112 ntBASIC1.8□□□□□ -2.12
LDB3O75112 RNU6-728P-201ENST00000365375 104 ntBASIC1.8□□□□□ -2.12
LDB3O75112 RNU6-1080P-201ENST00000383982 107 ntBASIC1.8□□□□□ -2.12
LDB3O75112 Y_RNA.420-201ENST00000384043 110 ntBASIC1.8□□□□□ -2.12
LDB3O75112 RNU6-22P-201ENST00000384355 107 ntBASIC1.8□□□□□ -2.12
LDB3O75112 Y_RNA.542-201ENST00000384641 111 ntBASIC1.8□□□□□ -2.12
LDB3O75112 RNU6-376P-201ENST00000384731 106 ntBASIC1.8□□□□□ -2.12
LDB3O75112 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.8□□□□□ -2.12
LDB3O75112 MIR1261-201ENST00000408659 82 ntBASIC1.8□□□□□ -2.12
LDB3O75112 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC1.8□□□□□ -2.12
LDB3O75112 RNU6-1291P-201ENST00000516591 104 ntBASIC1.8□□□□□ -2.12
LDB3O75112 RNU6-1096P-201ENST00000517089 102 ntBASIC1.8□□□□□ -2.12
LDB3O75112 RPL23AP91-201ENST00000569211 455 ntBASIC1.8□□□□□ -2.12
LDB3O75112 AC091178.2-201ENST00000584401 117 ntBASIC1.8□□□□□ -2.12
LDB3O75112 AC120024.3-201ENST00000603167 156 ntBASIC1.8□□□□□ -2.12
LDB3O75112 AL359075.3-201ENST00000613288 217 ntBASIC1.8□□□□□ -2.12
LDB3O75112 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.8□□□□□ -2.12
LDB3O75112 AC245060.5-201ENST00000610778 3293 ntBASIC1.8□□□□□ -2.12
LDB3O75112 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC1.79□□□□□ -2.12
LDB3O75112 RNU6-1209P-201ENST00000363655 107 ntBASIC1.79□□□□□ -2.12
LDB3O75112 Y_RNA.337-201ENST00000365312 102 ntBASIC1.79□□□□□ -2.12
LDB3O75112 SNORA22C-201ENST00000384614 134 ntBASIC1.79□□□□□ -2.12
LDB3O75112 RNU11-5P-201ENST00000391216 129 ntBASIC1.79□□□□□ -2.12
LDB3O75112 RNU4-43P-201ENST00000410628 137 ntBASIC1.79□□□□□ -2.12
LDB3O75112 AL445685.2-201ENST00000422551 342 ntBASIC1.79□□□□□ -2.12
LDB3O75112 HMGN2P38-201ENST00000423806 265 ntBASIC1.79□□□□□ -2.12
LDB3O75112 AC099677.2-201ENST00000436385 175 ntBASIC1.79□□□□□ -2.12
LDB3O75112 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC1.79□□□□□ -2.12
LDB3O75112 RNU7-99P-201ENST00000516271 62 ntBASIC1.79□□□□□ -2.12
LDB3O75112 RNU1-142P-201ENST00000516682 145 ntBASIC1.79□□□□□ -2.12
LDB3O75112 AC024995.1-201ENST00000523014 93 ntBASIC1.79□□□□□ -2.12
LDB3O75112 HMSD-204ENST00000526932 162 ntTSL 3 BASIC1.79□□□□□ -2.12
LDB3O75112 AC112693.2-201ENST00000556538 232 ntBASIC1.79□□□□□ -2.12
LDB3O75112 MIR4299-201ENST00000577899 72 ntBASIC1.79□□□□□ -2.12
LDB3O75112 AL773524.1-201ENST00000614065 229 ntBASIC1.79□□□□□ -2.12
LDB3O75112 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC1.79□□□□□ -2.12
LDB3O75112 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC1.79□□□□□ -2.12
LDB3O75112 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.79□□□□□ -2.12
LDB3O75112 ZNF355P-201ENST00000427301 3216 ntBASIC1.79□□□□□ -2.12
LDB3O75112 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC1.79□□□□□ -2.12
LDB3O75112 Y_RNA.251-201ENST00000364551 99 ntBASIC1.78□□□□□ -2.12
LDB3O75112 Y_RNA.261-201ENST00000364631 102 ntBASIC1.78□□□□□ -2.12
LDB3O75112 Y_RNA.525-201ENST00000384570 113 ntBASIC1.78□□□□□ -2.12
LDB3O75112 SNORA8-201ENST00000384574 139 ntBASIC1.78□□□□□ -2.12
LDB3O75112 AC019129.1-201ENST00000403786 261 ntBASIC1.78□□□□□ -2.12
LDB3O75112 RNA5SP501-201ENST00000410990 112 ntBASIC1.78□□□□□ -2.12
LDB3O75112 AC244636.1-201ENST00000421152 228 ntBASIC1.78□□□□□ -2.12
LDB3O75112 AC003989.2-201ENST00000440224 169 ntBASIC1.78□□□□□ -2.12
LDB3O75112 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC1.78□□□□□ -2.12
LDB3O75112 NDUFA4P2-201ENST00000489989 244 ntBASIC1.78□□□□□ -2.12
LDB3O75112 RNU6-1234P-201ENST00000516877 103 ntBASIC1.78□□□□□ -2.12
LDB3O75112 AL627230.6-201ENST00000611129 280 ntBASIC1.78□□□□□ -2.12
LDB3O75112 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.78□□□□□ -2.12
LDB3O75112 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.78□□□□□ -2.12
LDB3O75112 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
LDB3O75112 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC1.77□□□□□ -2.13
LDB3O75112 RNU6-508P-201ENST00000363231 103 ntBASIC1.77□□□□□ -2.13
LDB3O75112 RNU6-978P-201ENST00000364371 103 ntBASIC1.77□□□□□ -2.13
LDB3O75112 SNORA48.1-201ENST00000390879 135 ntBASIC1.77□□□□□ -2.13
LDB3O75112 RNA5SP323-201ENST00000391094 133 ntBASIC1.77□□□□□ -2.13
LDB3O75112 RNA5SP212-201ENST00000391223 107 ntBASIC1.77□□□□□ -2.13
LDB3O75112 AL606517.2-201ENST00000442855 241 ntBASIC1.77□□□□□ -2.13
LDB3O75112 RPL23AP6-201ENST00000446637 472 ntBASIC1.77□□□□□ -2.13
LDB3O75112 MIR3935-201ENST00000583472 104 ntBASIC1.77□□□□□ -2.13
LDB3O75112 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.76□□□□□ -2.13
LDB3O75112 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.76□□□□□ -2.13
LDB3O75112 RNU6-1290P-201ENST00000362957 109 ntBASIC1.76□□□□□ -2.13
LDB3O75112 RNU6-1019P-201ENST00000364424 107 ntBASIC1.76□□□□□ -2.13
LDB3O75112 Y_RNA.294-201ENST00000364916 102 ntBASIC1.76□□□□□ -2.13
LDB3O75112 Y_RNA.393-201ENST00000383936 102 ntBASIC1.76□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 110.6 ms