Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC2.17□□□□□ -2.06
HOXA3O43365 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
HOXA3O43365 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC2.17□□□□□ -2.06
HOXA3O43365 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
HOXA3O43365 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.17□□□□□ -2.06
HOXA3O43365 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.17□□□□□ -2.06
HOXA3O43365 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
HOXA3O43365 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.16□□□□□ -2.06
HOXA3O43365 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC2.16□□□□□ -2.06
HOXA3O43365 RNU6-235P-201ENST00000362644 107 ntBASIC2.16□□□□□ -2.06
HOXA3O43365 Y_RNA.52-201ENST00000362760 96 ntBASIC2.16□□□□□ -2.06
HOXA3O43365 RNA5SP68-201ENST00000363885 119 ntBASIC2.16□□□□□ -2.06
HOXA3O43365 MIR548A2-201ENST00000384956 97 ntBASIC2.16□□□□□ -2.06
HOXA3O43365 MIR891A-201ENST00000401237 79 ntBASIC2.16□□□□□ -2.06
HOXA3O43365 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.16□□□□□ -2.06
HOXA3O43365 Y_RNA.629-201ENST00000411368 105 ntBASIC2.16□□□□□ -2.06
HOXA3O43365 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC2.16□□□□□ -2.06
HOXA3O43365 RNU7-107P-201ENST00000459121 61 ntBASIC2.16□□□□□ -2.06
HOXA3O43365 AC003982.1-202ENST00000469928 248 ntBASIC2.16□□□□□ -2.06
HOXA3O43365 Y_RNA.690-201ENST00000516603 95 ntBASIC2.16□□□□□ -2.06
HOXA3O43365 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
HOXA3O43365 SNORA28-201ENST00000606769 126 ntBASIC2.16□□□□□ -2.06
HOXA3O43365 AC006441.5-201ENST00000612680 209 ntBASIC2.16□□□□□ -2.06
HOXA3O43365 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.16□□□□□ -2.06
HOXA3O43365 RNU6-268P-201ENST00000364174 107 ntBASIC2.15□□□□□ -2.07
HOXA3O43365 RNU6-309P-201ENST00000364573 106 ntBASIC2.15□□□□□ -2.07
HOXA3O43365 RNU1-109P-201ENST00000383960 147 ntBASIC2.15□□□□□ -2.07
HOXA3O43365 SNORA80E-201ENST00000384744 137 ntBASIC2.15□□□□□ -2.07
HOXA3O43365 MIR518F-201ENST00000384973 87 ntBASIC2.15□□□□□ -2.07
HOXA3O43365 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.15□□□□□ -2.07
HOXA3O43365 SNORD77.3-201ENST00000391113 65 ntBASIC2.15□□□□□ -2.07
HOXA3O43365 RN7SKP200-201ENST00000410564 320 ntBASIC2.15□□□□□ -2.07
HOXA3O43365 SNRPGP14-201ENST00000435400 219 ntBASIC2.15□□□□□ -2.07
HOXA3O43365 AL513328.1-201ENST00000446460 224 ntBASIC2.15□□□□□ -2.07
HOXA3O43365 RNA5SP148-201ENST00000516527 94 ntBASIC2.15□□□□□ -2.07
HOXA3O43365 AC090049.2-201ENST00000550377 109 ntBASIC2.15□□□□□ -2.07
HOXA3O43365 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC2.15□□□□□ -2.07
HOXA3O43365 MIR3670-2-201ENST00000582974 65 ntBASIC2.15□□□□□ -2.07
HOXA3O43365 MIR3670-1-201ENST00000584160 65 ntBASIC2.15□□□□□ -2.07
HOXA3O43365 MIR3670-3-201ENST00000584855 65 ntBASIC2.15□□□□□ -2.07
HOXA3O43365 MIR3670-4-201ENST00000612260 65 ntBASIC2.15□□□□□ -2.07
HOXA3O43365 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.14□□□□□ -2.07
HOXA3O43365 RNU6-508P-201ENST00000363231 103 ntBASIC2.14□□□□□ -2.07
HOXA3O43365 Y_RNA.114-201ENST00000363265 113 ntBASIC2.14□□□□□ -2.07
HOXA3O43365 SNORA63D-201ENST00000364359 132 ntBASIC2.14□□□□□ -2.07
HOXA3O43365 Y_RNA.336-201ENST00000365307 109 ntBASIC2.14□□□□□ -2.07
HOXA3O43365 RNA5SP270-201ENST00000411361 118 ntBASIC2.14□□□□□ -2.07
HOXA3O43365 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.14□□□□□ -2.07
HOXA3O43365 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC2.14□□□□□ -2.07
HOXA3O43365 AF228730.3-201ENST00000436691 102 ntBASIC2.14□□□□□ -2.07
HOXA3O43365 HSPE1P9-201ENST00000440046 311 ntBASIC2.14□□□□□ -2.07
HOXA3O43365 AL158147.1-201ENST00000443970 75 ntBASIC2.14□□□□□ -2.07
HOXA3O43365 AC008413.1-201ENST00000511864 177 ntBASIC2.14□□□□□ -2.07
HOXA3O43365 MIR3945-201ENST00000581853 98 ntBASIC2.14□□□□□ -2.07
HOXA3O43365 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC2.14□□□□□ -2.07
HOXA3O43365 SNORD14A-201ENST00000606526 91 ntBASIC2.14□□□□□ -2.07
HOXA3O43365 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC2.14□□□□□ -2.07
HOXA3O43365 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.14□□□□□ -2.07
HOXA3O43365 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
HOXA3O43365 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
HOXA3O43365 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
HOXA3O43365 ICE2P2-201ENST00000483823 2787 ntBASIC2.13□□□□□ -2.07
HOXA3O43365 VTRNA1-1-201ENST00000363120 99 ntBASIC2.13□□□□□ -2.07
HOXA3O43365 Y_RNA.525-201ENST00000384570 113 ntBASIC2.13□□□□□ -2.07
HOXA3O43365 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC2.13□□□□□ -2.07
HOXA3O43365 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC2.13□□□□□ -2.07
HOXA3O43365 SNORA48.1-201ENST00000390879 135 ntBASIC2.13□□□□□ -2.07
HOXA3O43365 AL590004.2-201ENST00000404787 371 ntBASIC2.13□□□□□ -2.07
HOXA3O43365 MIR548O-201ENST00000408583 114 ntBASIC2.13□□□□□ -2.07
HOXA3O43365 RNA5SP501-201ENST00000410990 112 ntBASIC2.13□□□□□ -2.07
HOXA3O43365 AL158823.1-201ENST00000418441 478 ntBASIC2.13□□□□□ -2.07
HOXA3O43365 AC114811.1-201ENST00000507207 168 ntBASIC2.13□□□□□ -2.07
HOXA3O43365 RNU5E-3P-201ENST00000515913 68 ntBASIC2.13□□□□□ -2.07
HOXA3O43365 RN7SKP179-201ENST00000516126 217 ntBASIC2.13□□□□□ -2.07
HOXA3O43365 RNU6-1116P-201ENST00000517269 99 ntBASIC2.13□□□□□ -2.07
HOXA3O43365 IGHVIII-67-2-201ENST00000519849 88 ntBASIC2.13□□□□□ -2.07
HOXA3O43365 SUB1P4-201ENST00000566062 339 ntBASIC2.13□□□□□ -2.07
HOXA3O43365 AC134878.1-201ENST00000619901 243 ntBASIC2.13□□□□□ -2.07
HOXA3O43365 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.13□□□□□ -2.07
HOXA3O43365 MTND5P32-201ENST00000560711 1802 ntBASIC2.12□□□□□ -2.07
HOXA3O43365 MIRLET7C-201ENST00000362160 84 ntBASIC2.12□□□□□ -2.07
HOXA3O43365 SNORA4.2-201ENST00000365313 147 ntBASIC2.12□□□□□ -2.07
HOXA3O43365 RNU6-163P-201ENST00000384396 106 ntBASIC2.12□□□□□ -2.07
HOXA3O43365 AL034345.1-201ENST00000407768 123 ntBASIC2.12□□□□□ -2.07
HOXA3O43365 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.12□□□□□ -2.07
HOXA3O43365 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC2.12□□□□□ -2.07
HOXA3O43365 RNU7-25P-201ENST00000516544 62 ntBASIC2.12□□□□□ -2.07
HOXA3O43365 MIR3605-201ENST00000583214 100 ntBASIC2.12□□□□□ -2.07
HOXA3O43365 MIR4635-201ENST00000583759 79 ntBASIC2.12□□□□□ -2.07
HOXA3O43365 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC2.12□□□□□ -2.07
HOXA3O43365 MIR6715A-201ENST00000615929 79 ntBASIC2.12□□□□□ -2.07
HOXA3O43365 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC2.12□□□□□ -2.07
HOXA3O43365 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.12□□□□□ -2.07
HOXA3O43365 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.12□□□□□ -2.07
HOXA3O43365 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
HOXA3O43365 Y_RNA.273-201ENST00000364703 102 ntBASIC2.11□□□□□ -2.07
HOXA3O43365 Y_RNA.280-201ENST00000364765 112 ntBASIC2.11□□□□□ -2.07
HOXA3O43365 Y_RNA.353-201ENST00000365440 108 ntBASIC2.11□□□□□ -2.07
HOXA3O43365 RNU6-950P-201ENST00000384651 107 ntBASIC2.11□□□□□ -2.07
HOXA3O43365 Y_RNA.547-201ENST00000384654 119 ntBASIC2.11□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 212.6 ms