Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.21□□□□□ -2.06
TDP1Q9NUW8 RNU6-1007P-201ENST00000516586 107 ntBASIC2.21□□□□□ -2.06
TDP1Q9NUW8 MIR4744-201ENST00000581563 82 ntBASIC2.21□□□□□ -2.06
TDP1Q9NUW8 MIR6840-201ENST00000611937 71 ntBASIC2.21□□□□□ -2.06
TDP1Q9NUW8 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
TDP1Q9NUW8 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.2□□□□□ -2.06
TDP1Q9NUW8 Y_RNA.412-201ENST00000384001 104 ntBASIC2.2□□□□□ -2.06
TDP1Q9NUW8 RNU6-296P-201ENST00000384608 107 ntBASIC2.2□□□□□ -2.06
TDP1Q9NUW8 MIR520A-201ENST00000384862 85 ntBASIC2.2□□□□□ -2.06
TDP1Q9NUW8 MIR764-201ENST00000390811 85 ntBASIC2.2□□□□□ -2.06
TDP1Q9NUW8 AL445646.1-201ENST00000431784 216 ntBASIC2.2□□□□□ -2.06
TDP1Q9NUW8 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC2.2□□□□□ -2.06
TDP1Q9NUW8 AL049830.1-201ENST00000468034 425 ntBASIC2.2□□□□□ -2.06
TDP1Q9NUW8 HMGN1P7-201ENST00000491722 313 ntBASIC2.2□□□□□ -2.06
TDP1Q9NUW8 AC074198.2-201ENST00000508153 258 ntBASIC2.2□□□□□ -2.06
TDP1Q9NUW8 Y_RNA.797-201ENST00000515977 94 ntBASIC2.2□□□□□ -2.06
TDP1Q9NUW8 SNORA31.10-201ENST00000516482 106 ntBASIC2.2□□□□□ -2.06
TDP1Q9NUW8 AL591926.4-201ENST00000616895 298 ntBASIC2.2□□□□□ -2.06
TDP1Q9NUW8 MIR8054-201ENST00000620877 86 ntBASIC2.2□□□□□ -2.06
TDP1Q9NUW8 U6.106-201ENST00000636360 105 ntBASIC2.2□□□□□ -2.06
TDP1Q9NUW8 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC2.2□□□□□ -2.06
TDP1Q9NUW8 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
TDP1Q9NUW8 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.19□□□□□ -2.06
TDP1Q9NUW8 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
TDP1Q9NUW8 Y_RNA.240-201ENST00000364469 95 ntBASIC2.19□□□□□ -2.06
TDP1Q9NUW8 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC2.19□□□□□ -2.06
TDP1Q9NUW8 RNU6-440P-201ENST00000390882 105 ntBASIC2.19□□□□□ -2.06
TDP1Q9NUW8 RNU6-578P-201ENST00000390980 103 ntBASIC2.19□□□□□ -2.06
TDP1Q9NUW8 AL606845.1-201ENST00000404881 255 ntBASIC2.19□□□□□ -2.06
TDP1Q9NUW8 SNORD11-201ENST00000459124 84 ntBASIC2.19□□□□□ -2.06
TDP1Q9NUW8 AC108210.2-201ENST00000503681 201 ntBASIC2.19□□□□□ -2.06
TDP1Q9NUW8 Y_RNA.662-201ENST00000516028 97 ntBASIC2.19□□□□□ -2.06
TDP1Q9NUW8 RNA5SP437-201ENST00000517249 129 ntBASIC2.19□□□□□ -2.06
TDP1Q9NUW8 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC2.19□□□□□ -2.06
TDP1Q9NUW8 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC2.19□□□□□ -2.06
TDP1Q9NUW8 AC108706.1-201ENST00000611053 297 ntBASIC2.19□□□□□ -2.06
TDP1Q9NUW8 JPX_2.1-201ENST00000614161 69 ntBASIC2.19□□□□□ -2.06
TDP1Q9NUW8 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC2.19□□□□□ -2.06
TDP1Q9NUW8 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC2.19□□□□□ -2.06
TDP1Q9NUW8 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
TDP1Q9NUW8 Y_RNA.75-201ENST00000362927 97 ntBASIC2.18□□□□□ -2.06
TDP1Q9NUW8 Y_RNA.180-201ENST00000363867 113 ntBASIC2.18□□□□□ -2.06
TDP1Q9NUW8 SNORA16B-201ENST00000364674 135 ntBASIC2.18□□□□□ -2.06
TDP1Q9NUW8 SNORA4.2-201ENST00000365313 147 ntBASIC2.18□□□□□ -2.06
TDP1Q9NUW8 RNU6-1228P-201ENST00000391014 107 ntBASIC2.18□□□□□ -2.06
TDP1Q9NUW8 RNA5SP100-201ENST00000410903 110 ntBASIC2.18□□□□□ -2.06
TDP1Q9NUW8 RNA5SP59-201ENST00000410922 110 ntBASIC2.18□□□□□ -2.06
TDP1Q9NUW8 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC2.18□□□□□ -2.06
TDP1Q9NUW8 HSPE1P9-201ENST00000440046 311 ntBASIC2.18□□□□□ -2.06
TDP1Q9NUW8 RPL23AP42-201ENST00000471152 471 ntBASIC2.18□□□□□ -2.06
TDP1Q9NUW8 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC2.18□□□□□ -2.06
TDP1Q9NUW8 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC2.18□□□□□ -2.06
TDP1Q9NUW8 5S_rRNA.3-201ENST00000517021 110 ntBASIC2.18□□□□□ -2.06
TDP1Q9NUW8 MRPS18CP4-201ENST00000535821 231 ntBASIC2.18□□□□□ -2.06
TDP1Q9NUW8 AC078899.2-201ENST00000595282 212 ntBASIC2.18□□□□□ -2.06
TDP1Q9NUW8 AL049861.1-201ENST00000603130 150 ntBASIC2.18□□□□□ -2.06
TDP1Q9NUW8 5S_rRNA.19-201ENST00000612131 110 ntBASIC2.18□□□□□ -2.06
TDP1Q9NUW8 5S_rRNA.18-201ENST00000621941 110 ntBASIC2.18□□□□□ -2.06
TDP1Q9NUW8 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
TDP1Q9NUW8 MIR126-201ENST00000362291 85 ntBASIC2.17□□□□□ -2.06
TDP1Q9NUW8 RNU6-275P-201ENST00000364910 107 ntBASIC2.17□□□□□ -2.06
TDP1Q9NUW8 SNORA80E-201ENST00000384744 137 ntBASIC2.17□□□□□ -2.06
TDP1Q9NUW8 Y_RNA.587-201ENST00000391210 103 ntBASIC2.17□□□□□ -2.06
TDP1Q9NUW8 SNRPGP10-201ENST00000432323 225 ntBASIC2.17□□□□□ -2.06
TDP1Q9NUW8 RPL23AP63-201ENST00000498752 471 ntBASIC2.17□□□□□ -2.06
TDP1Q9NUW8 MIR5694-201ENST00000581190 76 ntBASIC2.17□□□□□ -2.06
TDP1Q9NUW8 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.17□□□□□ -2.06
TDP1Q9NUW8 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
TDP1Q9NUW8 RNA5SP276-201ENST00000362580 94 ntBASIC2.16□□□□□ -2.06
TDP1Q9NUW8 Y_RNA.265-201ENST00000364677 108 ntBASIC2.16□□□□□ -2.06
TDP1Q9NUW8 RNY3P5-201ENST00000384127 102 ntBASIC2.16□□□□□ -2.06
TDP1Q9NUW8 RNU2-7P-201ENST00000410794 178 ntBASIC2.16□□□□□ -2.06
TDP1Q9NUW8 AL158823.1-201ENST00000418441 478 ntBASIC2.16□□□□□ -2.06
TDP1Q9NUW8 STAG3L5P-204ENST00000443759 179 ntBASIC2.16□□□□□ -2.06
TDP1Q9NUW8 RNU6-561P-201ENST00000516222 102 ntBASIC2.16□□□□□ -2.06
TDP1Q9NUW8 AC109810.1-201ENST00000534066 224 ntBASIC2.16□□□□□ -2.06
TDP1Q9NUW8 PLD1-217ENST00000627725 174 ntTSL 5 BASIC2.16□□□□□ -2.06
TDP1Q9NUW8 GS1-279B7.1-204ENST00000641809 378 ntBASIC2.16□□□□□ -2.06
TDP1Q9NUW8 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
TDP1Q9NUW8 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.15□□□□□ -2.06
TDP1Q9NUW8 RNU6-312P-201ENST00000364629 107 ntBASIC2.15□□□□□ -2.07
TDP1Q9NUW8 SNORA12.1-201ENST00000390873 148 ntBASIC2.15□□□□□ -2.07
TDP1Q9NUW8 RNA5SP482-201ENST00000391269 118 ntBASIC2.15□□□□□ -2.07
TDP1Q9NUW8 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.15□□□□□ -2.07
TDP1Q9NUW8 AC023449.1-201ENST00000454464 154 ntBASIC2.15□□□□□ -2.07
TDP1Q9NUW8 NDUFA4P2-201ENST00000489989 244 ntBASIC2.15□□□□□ -2.07
TDP1Q9NUW8 RNU7-28P-201ENST00000516759 62 ntBASIC2.15□□□□□ -2.07
TDP1Q9NUW8 uc_338.4-201ENST00000616635 176 ntBASIC2.15□□□□□ -2.07
TDP1Q9NUW8 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.07
TDP1Q9NUW8 ZNF702P-202ENST00000434269 1966 ntBASIC2.15□□□□□ -2.07
TDP1Q9NUW8 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.14□□□□□ -2.07
TDP1Q9NUW8 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
TDP1Q9NUW8 Y_RNA.23-201ENST00000362496 106 ntBASIC2.14□□□□□ -2.07
TDP1Q9NUW8 SNORD68-201ENST00000363214 84 ntBASIC2.14□□□□□ -2.07
TDP1Q9NUW8 MIR522-201ENST00000385071 87 ntBASIC2.14□□□□□ -2.07
TDP1Q9NUW8 MLLT10P1-201ENST00000418346 262 ntBASIC2.14□□□□□ -2.07
TDP1Q9NUW8 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC2.14□□□□□ -2.07
TDP1Q9NUW8 OR9P1P-201ENST00000496431 281 ntBASIC2.14□□□□□ -2.07
TDP1Q9NUW8 SNORD77.4-201ENST00000516158 81 ntBASIC2.14□□□□□ -2.07
TDP1Q9NUW8 SNORA31.17-201ENST00000516953 127 ntBASIC2.14□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 173.5 ms