Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 MIR367-201ENST00000362299 68 ntBASIC2.14□□□□□ -2.07
NUP88Q99567 RNU6-360P-201ENST00000390944 104 ntBASIC2.14□□□□□ -2.07
NUP88Q99567 SNORA17.3-201ENST00000391159 129 ntBASIC2.14□□□□□ -2.07
NUP88Q99567 RNU6-651P-201ENST00000411040 105 ntBASIC2.14□□□□□ -2.07
NUP88Q99567 RN7SL274P-201ENST00000492268 272 ntBASIC2.14□□□□□ -2.07
NUP88Q99567 AC006006.1-201ENST00000603082 144 ntBASIC2.14□□□□□ -2.07
NUP88Q99567 RNU6-1031P-201ENST00000384773 107 ntBASIC2.13□□□□□ -2.07
NUP88Q99567 RNA5SP482-201ENST00000391269 118 ntBASIC2.13□□□□□ -2.07
NUP88Q99567 MRPS17P9-201ENST00000511924 393 ntBASIC2.13□□□□□ -2.07
NUP88Q99567 Y_RNA.680-201ENST00000516441 93 ntBASIC2.13□□□□□ -2.07
NUP88Q99567 RNU7-28P-201ENST00000516759 62 ntBASIC2.13□□□□□ -2.07
NUP88Q99567 MIR4448-201ENST00000584360 86 ntBASIC2.13□□□□□ -2.07
NUP88Q99567 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC2.13□□□□□ -2.07
NUP88Q99567 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
NUP88Q99567 MIR126-201ENST00000362291 85 ntBASIC2.12□□□□□ -2.07
NUP88Q99567 Y_RNA.203-201ENST00000364106 102 ntBASIC2.12□□□□□ -2.07
NUP88Q99567 AL627390.1-201ENST00000396055 340 ntBASIC2.12□□□□□ -2.07
NUP88Q99567 MIR1267-201ENST00000408723 78 ntBASIC2.12□□□□□ -2.07
NUP88Q99567 RNU6-1023P-201ENST00000516137 106 ntBASIC2.12□□□□□ -2.07
NUP88Q99567 Y_RNA.676-201ENST00000516393 96 ntBASIC2.12□□□□□ -2.07
NUP88Q99567 AC022254.1-201ENST00000567857 235 ntBASIC2.12□□□□□ -2.07
NUP88Q99567 AC073349.3-201ENST00000617616 186 ntBASIC2.12□□□□□ -2.07
NUP88Q99567 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC2.12□□□□□ -2.07
NUP88Q99567 Y_RNA.82-201ENST00000363000 102 ntBASIC2.11□□□□□ -2.07
NUP88Q99567 Y_RNA.92-201ENST00000363043 102 ntBASIC2.11□□□□□ -2.07
NUP88Q99567 Y_RNA.235-201ENST00000364412 102 ntBASIC2.11□□□□□ -2.07
NUP88Q99567 RNU4-41P-201ENST00000364426 143 ntBASIC2.11□□□□□ -2.07
NUP88Q99567 Y_RNA.306-201ENST00000365015 102 ntBASIC2.11□□□□□ -2.07
NUP88Q99567 Y_RNA.312-201ENST00000365089 102 ntBASIC2.11□□□□□ -2.07
NUP88Q99567 Y_RNA.322-201ENST00000365151 102 ntBASIC2.11□□□□□ -2.07
NUP88Q99567 Y_RNA.338-201ENST00000365320 114 ntBASIC2.11□□□□□ -2.07
NUP88Q99567 RNU6-144P-201ENST00000383951 107 ntBASIC2.11□□□□□ -2.07
NUP88Q99567 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC2.11□□□□□ -2.07
NUP88Q99567 RNA5SP489-201ENST00000410986 109 ntBASIC2.11□□□□□ -2.07
NUP88Q99567 Y_RNA.650-201ENST00000459002 102 ntBASIC2.11□□□□□ -2.07
NUP88Q99567 SNORD13-201ENST00000459299 104 ntBASIC2.11□□□□□ -2.07
NUP88Q99567 Y_RNA.777-201ENST00000516982 102 ntBASIC2.11□□□□□ -2.07
NUP88Q99567 MIR4724-201ENST00000579485 89 ntBASIC2.11□□□□□ -2.07
NUP88Q99567 Y_RNA.771-201ENST00000598668 102 ntBASIC2.11□□□□□ -2.07
NUP88Q99567 AL591926.4-201ENST00000616895 298 ntBASIC2.11□□□□□ -2.07
NUP88Q99567 uc_338.20-201ENST00000621563 178 ntBASIC2.11□□□□□ -2.07
NUP88Q99567 Y_RNA.789-201ENST00000622480 102 ntBASIC2.11□□□□□ -2.07
NUP88Q99567 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC2.11□□□□□ -2.07
NUP88Q99567 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
NUP88Q99567 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC2.1□□□□□ -2.07
NUP88Q99567 RNU6-661P-201ENST00000362409 107 ntBASIC2.1□□□□□ -2.07
NUP88Q99567 Y_RNA.122-201ENST00000363331 96 ntBASIC2.1□□□□□ -2.07
NUP88Q99567 Y_RNA.164-201ENST00000363709 102 ntBASIC2.1□□□□□ -2.07
NUP88Q99567 Y_RNA.253-201ENST00000364562 112 ntBASIC2.1□□□□□ -2.07
NUP88Q99567 HMGN1P7-201ENST00000491722 313 ntBASIC2.1□□□□□ -2.07
NUP88Q99567 MTND1P19-201ENST00000511780 315 ntBASIC2.1□□□□□ -2.07
NUP88Q99567 MIR514B-201ENST00000516774 80 ntBASIC2.1□□□□□ -2.07
NUP88Q99567 Y_RNA.714-201ENST00000517065 90 ntBASIC2.1□□□□□ -2.07
NUP88Q99567 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC2.1□□□□□ -2.07
NUP88Q99567 MIR4643-201ENST00000577473 78 ntBASIC2.1□□□□□ -2.07
NUP88Q99567 MIR2681-201ENST00000581814 105 ntBASIC2.1□□□□□ -2.07
NUP88Q99567 AC021506.2-201ENST00000612354 169 ntBASIC2.1□□□□□ -2.07
NUP88Q99567 MIR8074-201ENST00000615081 81 ntBASIC2.1□□□□□ -2.07
NUP88Q99567 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
NUP88Q99567 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.07
NUP88Q99567 Y_RNA.20-201ENST00000362479 113 ntBASIC2.09□□□□□ -2.07
NUP88Q99567 RNA5SP190-201ENST00000365222 118 ntBASIC2.09□□□□□ -2.07
NUP88Q99567 RNU6-338P-201ENST00000383888 105 ntBASIC2.09□□□□□ -2.07
NUP88Q99567 Y_RNA.476-201ENST00000384347 108 ntBASIC2.09□□□□□ -2.07
NUP88Q99567 RNU6ATAC3P-201ENST00000387974 126 ntBASIC2.09□□□□□ -2.07
NUP88Q99567 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC2.09□□□□□ -2.07
NUP88Q99567 SNRPGP10-201ENST00000432323 225 ntBASIC2.09□□□□□ -2.07
NUP88Q99567 RNU6-250P-201ENST00000516958 103 ntBASIC2.09□□□□□ -2.07
NUP88Q99567 SNORA44.1-201ENST00000517031 108 ntBASIC2.09□□□□□ -2.07
NUP88Q99567 AL442067.1-201ENST00000613261 223 ntBASIC2.09□□□□□ -2.07
NUP88Q99567 Y_RNA.802-201ENST00000614892 130 ntBASIC2.09□□□□□ -2.07
NUP88Q99567 ICE2P2-201ENST00000483823 2787 ntBASIC2.09□□□□□ -2.08
NUP88Q99567 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.08□□□□□ -2.08
NUP88Q99567 RNU4-10P-201ENST00000364383 140 ntBASIC2.08□□□□□ -2.08
NUP88Q99567 Y_RNA.269-201ENST00000364685 89 ntBASIC2.08□□□□□ -2.08
NUP88Q99567 Y_RNA.292-201ENST00000364904 97 ntBASIC2.08□□□□□ -2.08
NUP88Q99567 RNU6-131P-201ENST00000391144 107 ntBASIC2.08□□□□□ -2.08
NUP88Q99567 MIR1278-201ENST00000408753 81 ntBASIC2.08□□□□□ -2.08
NUP88Q99567 RNU6-383P-201ENST00000410864 94 ntBASIC2.08□□□□□ -2.08
NUP88Q99567 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC2.08□□□□□ -2.08
NUP88Q99567 AC023449.1-201ENST00000454464 154 ntBASIC2.08□□□□□ -2.08
NUP88Q99567 SNORD2.1-201ENST00000458762 69 ntBASIC2.08□□□□□ -2.08
NUP88Q99567 SNORD116-28-201ENST00000516123 91 ntBASIC2.08□□□□□ -2.08
NUP88Q99567 SNORA25.15-201ENST00000516487 89 ntBASIC2.08□□□□□ -2.08
NUP88Q99567 RNU6-111P-201ENST00000517179 105 ntBASIC2.08□□□□□ -2.08
NUP88Q99567 RPL23AP91-201ENST00000569211 455 ntBASIC2.08□□□□□ -2.08
NUP88Q99567 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC2.08□□□□□ -2.08
NUP88Q99567 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC2.07□□□□□ -2.08
NUP88Q99567 RNU6-1084P-201ENST00000362498 107 ntBASIC2.07□□□□□ -2.08
NUP88Q99567 Y_RNA.76-201ENST00000362931 109 ntBASIC2.07□□□□□ -2.08
NUP88Q99567 SNORA16.1-201ENST00000364597 132 ntBASIC2.07□□□□□ -2.08
NUP88Q99567 Y_RNA.539-201ENST00000384635 107 ntBASIC2.07□□□□□ -2.08
NUP88Q99567 SNORA8.3-201ENST00000384679 139 ntBASIC2.07□□□□□ -2.08
NUP88Q99567 MIR802-201ENST00000390235 94 ntBASIC2.07□□□□□ -2.08
NUP88Q99567 RNU2-40P-201ENST00000410833 196 ntBASIC2.07□□□□□ -2.08
NUP88Q99567 AC108667.1-201ENST00000428618 249 ntBASIC2.07□□□□□ -2.08
NUP88Q99567 CALM2P4-201ENST00000430810 426 ntBASIC2.07□□□□□ -2.08
NUP88Q99567 JTBP1-201ENST00000441314 247 ntBASIC2.07□□□□□ -2.08
NUP88Q99567 OR9P1P-201ENST00000496431 281 ntBASIC2.07□□□□□ -2.08
NUP88Q99567 RNU4-71P-201ENST00000516258 113 ntBASIC2.07□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 128.7 ms