Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC2.9□□□□□ -1.94
USHBP1Q8N6Y0 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
USHBP1Q8N6Y0 U8.1-201ENST00000362843 134 ntBASIC2.9□□□□□ -1.95
USHBP1Q8N6Y0 Y_RNA.294-201ENST00000364916 102 ntBASIC2.9□□□□□ -1.95
USHBP1Q8N6Y0 RNU6-1138P-201ENST00000365359 106 ntBASIC2.9□□□□□ -1.95
USHBP1Q8N6Y0 SNORD18B-201ENST00000365659 72 ntBASIC2.9□□□□□ -1.95
USHBP1Q8N6Y0 MIR562-201ENST00000384894 95 ntBASIC2.9□□□□□ -1.95
USHBP1Q8N6Y0 MIR520G-201ENST00000385064 90 ntBASIC2.9□□□□□ -1.95
USHBP1Q8N6Y0 RNU2-48P-201ENST00000410694 191 ntBASIC2.9□□□□□ -1.95
USHBP1Q8N6Y0 AC060773.1-201ENST00000421698 310 ntBASIC2.9□□□□□ -1.95
USHBP1Q8N6Y0 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.9□□□□□ -1.95
USHBP1Q8N6Y0 HMGN2P23-201ENST00000456759 269 ntBASIC2.9□□□□□ -1.95
USHBP1Q8N6Y0 OR9P1P-201ENST00000496431 281 ntBASIC2.9□□□□□ -1.95
USHBP1Q8N6Y0 RNU7-149P-201ENST00000516739 59 ntBASIC2.9□□□□□ -1.95
USHBP1Q8N6Y0 MIR3121-201ENST00000579680 77 ntBASIC2.9□□□□□ -1.95
USHBP1Q8N6Y0 AL355297.2-201ENST00000604792 129 ntBASIC2.9□□□□□ -1.95
USHBP1Q8N6Y0 JPX_2.1-201ENST00000614161 69 ntBASIC2.9□□□□□ -1.95
USHBP1Q8N6Y0 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC2.9□□□□□ -1.95
USHBP1Q8N6Y0 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.9□□□□□ -1.95
USHBP1Q8N6Y0 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.9□□□□□ -1.95
USHBP1Q8N6Y0 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.89□□□□□ -1.95
USHBP1Q8N6Y0 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.89□□□□□ -1.95
USHBP1Q8N6Y0 RNU6-235P-201ENST00000362644 107 ntBASIC2.89□□□□□ -1.95
USHBP1Q8N6Y0 Y_RNA.91-201ENST00000363042 107 ntBASIC2.89□□□□□ -1.95
USHBP1Q8N6Y0 Y_RNA.525-201ENST00000384570 113 ntBASIC2.89□□□□□ -1.95
USHBP1Q8N6Y0 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC2.89□□□□□ -1.95
USHBP1Q8N6Y0 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC2.89□□□□□ -1.95
USHBP1Q8N6Y0 HMGN2P34-201ENST00000437647 269 ntBASIC2.89□□□□□ -1.95
USHBP1Q8N6Y0 AL603825.1-201ENST00000438481 80 ntBASIC2.89□□□□□ -1.95
USHBP1Q8N6Y0 RNU7-99P-201ENST00000516271 62 ntBASIC2.89□□□□□ -1.95
USHBP1Q8N6Y0 RNU6-1096P-201ENST00000517089 102 ntBASIC2.89□□□□□ -1.95
USHBP1Q8N6Y0 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.89□□□□□ -1.95
USHBP1Q8N6Y0 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.89□□□□□ -1.95
USHBP1Q8N6Y0 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.88□□□□□ -1.95
USHBP1Q8N6Y0 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.88□□□□□ -1.95
USHBP1Q8N6Y0 MIR340-201ENST00000362125 95 ntBASIC2.88□□□□□ -1.95
USHBP1Q8N6Y0 RNU6-220P-201ENST00000390919 107 ntBASIC2.88□□□□□ -1.95
USHBP1Q8N6Y0 RNU6-1186P-201ENST00000410429 97 ntBASIC2.88□□□□□ -1.95
USHBP1Q8N6Y0 AL158147.1-201ENST00000443970 75 ntBASIC2.88□□□□□ -1.95
USHBP1Q8N6Y0 Z82195.2-201ENST00000612348 18351 ntBASIC2.88□□□□□ -1.95
USHBP1Q8N6Y0 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC2.87□□□□□ -1.95
USHBP1Q8N6Y0 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.87□□□□□ -1.95
USHBP1Q8N6Y0 RNU6-153P-201ENST00000364422 104 ntBASIC2.87□□□□□ -1.95
USHBP1Q8N6Y0 Y_RNA.486-201ENST00000384398 107 ntBASIC2.87□□□□□ -1.95
USHBP1Q8N6Y0 RNU6-476P-201ENST00000384726 107 ntBASIC2.87□□□□□ -1.95
USHBP1Q8N6Y0 Y_RNA.621-201ENST00000411065 96 ntBASIC2.87□□□□□ -1.95
USHBP1Q8N6Y0 AL158823.1-201ENST00000418441 478 ntBASIC2.87□□□□□ -1.95
USHBP1Q8N6Y0 AC011406.1-201ENST00000512440 370 ntBASIC2.87□□□□□ -1.95
USHBP1Q8N6Y0 SCARNA16.3-201ENST00000516595 184 ntBASIC2.87□□□□□ -1.95
USHBP1Q8N6Y0 RNU6-365P-201ENST00000517113 106 ntBASIC2.87□□□□□ -1.95
USHBP1Q8N6Y0 MIR3616-201ENST00000584070 92 ntBASIC2.87□□□□□ -1.95
USHBP1Q8N6Y0 AC007229.1-201ENST00000590455 412 ntBASIC2.87□□□□□ -1.95
USHBP1Q8N6Y0 AC073413.2-201ENST00000604332 360 ntBASIC2.87□□□□□ -1.95
USHBP1Q8N6Y0 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.87□□□□□ -1.95
USHBP1Q8N6Y0 Y_RNA.114-201ENST00000363265 113 ntBASIC2.86□□□□□ -1.95
USHBP1Q8N6Y0 RNU6-1144P-201ENST00000384247 104 ntBASIC2.86□□□□□ -1.95
USHBP1Q8N6Y0 AL603914.1-201ENST00000401964 204 ntBASIC2.86□□□□□ -1.95
USHBP1Q8N6Y0 MLLT10P1-201ENST00000418346 262 ntBASIC2.86□□□□□ -1.95
USHBP1Q8N6Y0 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
USHBP1Q8N6Y0 SNORA18.4-201ENST00000516440 124 ntBASIC2.86□□□□□ -1.95
USHBP1Q8N6Y0 MIR3914-2-201ENST00000637339 95 ntBASIC2.86□□□□□ -1.95
USHBP1Q8N6Y0 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
USHBP1Q8N6Y0 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
USHBP1Q8N6Y0 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.86□□□□□ -1.95
USHBP1Q8N6Y0 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC2.86□□□□□ -1.95
USHBP1Q8N6Y0 AL391516.1-201ENST00000554380 2449 ntBASIC2.85□□□□□ -1.95
USHBP1Q8N6Y0 SNORD56.5-201ENST00000364281 72 ntBASIC2.85□□□□□ -1.95
USHBP1Q8N6Y0 Y_RNA.280-201ENST00000364765 112 ntBASIC2.85□□□□□ -1.95
USHBP1Q8N6Y0 RNU6-429P-201ENST00000384582 108 ntBASIC2.85□□□□□ -1.95
USHBP1Q8N6Y0 AL445687.1-201ENST00000439946 251 ntBASIC2.85□□□□□ -1.95
USHBP1Q8N6Y0 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.85□□□□□ -1.95
USHBP1Q8N6Y0 RNU6-504P-201ENST00000516568 104 ntBASIC2.85□□□□□ -1.95
USHBP1Q8N6Y0 AC133485.4-201ENST00000561835 220 ntBASIC2.85□□□□□ -1.95
USHBP1Q8N6Y0 AC138907.4-201ENST00000570107 226 ntBASIC2.85□□□□□ -1.95
USHBP1Q8N6Y0 AC091178.2-201ENST00000584401 117 ntBASIC2.85□□□□□ -1.95
USHBP1Q8N6Y0 AC009831.4-201ENST00000620744 325 ntBASIC2.85□□□□□ -1.95
USHBP1Q8N6Y0 U6.95-201ENST00000636931 70 ntBASIC2.85□□□□□ -1.95
USHBP1Q8N6Y0 MIR219B-201ENST00000637023 88 ntBASIC2.85□□□□□ -1.95
USHBP1Q8N6Y0 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.85□□□□□ -1.95
USHBP1Q8N6Y0 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
USHBP1Q8N6Y0 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC2.84□□□□□ -1.95
USHBP1Q8N6Y0 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
USHBP1Q8N6Y0 snoU2-30.2-201ENST00000362805 70 ntBASIC2.84□□□□□ -1.95
USHBP1Q8N6Y0 AC233266.1-201ENST00000454518 96 ntBASIC2.84□□□□□ -1.95
USHBP1Q8N6Y0 HMGN1P7-201ENST00000491722 313 ntBASIC2.84□□□□□ -1.95
USHBP1Q8N6Y0 PDCD5P2-201ENST00000507570 312 ntBASIC2.84□□□□□ -1.95
USHBP1Q8N6Y0 RNU6-772P-201ENST00000516042 105 ntBASIC2.84□□□□□ -1.95
USHBP1Q8N6Y0 Y_RNA.690-201ENST00000516603 95 ntBASIC2.84□□□□□ -1.95
USHBP1Q8N6Y0 RNU6-548P-201ENST00000517083 115 ntBASIC2.84□□□□□ -1.95
USHBP1Q8N6Y0 RNU6-667P-201ENST00000517186 102 ntBASIC2.84□□□□□ -1.95
USHBP1Q8N6Y0 AC242852.1-201ENST00000612151 96 ntBASIC2.84□□□□□ -1.95
USHBP1Q8N6Y0 AC244015.1-201ENST00000622301 99 ntBASIC2.84□□□□□ -1.95
USHBP1Q8N6Y0 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.84□□□□□ -1.96
USHBP1Q8N6Y0 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC2.83□□□□□ -1.96
USHBP1Q8N6Y0 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
USHBP1Q8N6Y0 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
USHBP1Q8N6Y0 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
USHBP1Q8N6Y0 MIR624-201ENST00000385217 97 ntBASIC2.83□□□□□ -1.96
USHBP1Q8N6Y0 RNU6-482P-201ENST00000391068 107 ntBASIC2.83□□□□□ -1.96
USHBP1Q8N6Y0 RNY4P18-201ENST00000391107 89 ntBASIC2.83□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 100.5 ms