Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AC024067.1-201ENST00000426199 223 ntBASIC0.88□□□□□ -2.27
SKA3Q8IX90 SNRPGP10-201ENST00000432323 225 ntBASIC0.88□□□□□ -2.27
SKA3Q8IX90 MTND4P19-201ENST00000446659 478 ntBASIC0.88□□□□□ -2.27
SKA3Q8IX90 LINC01399-202ENST00000458450 244 ntBASIC0.88□□□□□ -2.27
SKA3Q8IX90 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.88□□□□□ -2.27
SKA3Q8IX90 AC090971.5-201ENST00000621102 293 ntBASIC0.88□□□□□ -2.27
SKA3Q8IX90 SNORD14.1-201ENST00000365609 90 ntBASIC0.87□□□□□ -2.27
SKA3Q8IX90 Y_RNA.395-201ENST00000383945 109 ntBASIC0.87□□□□□ -2.27
SKA3Q8IX90 RNU6-1323P-201ENST00000384025 107 ntBASIC0.87□□□□□ -2.27
SKA3Q8IX90 Y_RNA.431-201ENST00000384086 102 ntBASIC0.87□□□□□ -2.27
SKA3Q8IX90 Y_RNA.445-201ENST00000384168 102 ntBASIC0.87□□□□□ -2.27
SKA3Q8IX90 Y_RNA.456-201ENST00000384232 111 ntBASIC0.87□□□□□ -2.27
SKA3Q8IX90 MIR1298-201ENST00000408783 112 ntBASIC0.87□□□□□ -2.27
SKA3Q8IX90 RNU6-1054P-201ENST00000411293 104 ntBASIC0.87□□□□□ -2.27
SKA3Q8IX90 AC010655.3-201ENST00000478818 450 ntBASIC0.87□□□□□ -2.27
SKA3Q8IX90 RPS23P4-201ENST00000487908 423 ntBASIC0.87□□□□□ -2.27
SKA3Q8IX90 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC0.87□□□□□ -2.27
SKA3Q8IX90 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC0.87□□□□□ -2.27
SKA3Q8IX90 AL391516.1-201ENST00000554380 2449 ntBASIC0.87□□□□□ -2.27
SKA3Q8IX90 RNU6-1084P-201ENST00000362498 107 ntBASIC0.86□□□□□ -2.27
SKA3Q8IX90 RNY1P10-201ENST00000363268 113 ntBASIC0.86□□□□□ -2.27
SKA3Q8IX90 snoU2-30.1-201ENST00000365012 70 ntBASIC0.86□□□□□ -2.27
SKA3Q8IX90 SNORD42.2-201ENST00000365570 69 ntBASIC0.86□□□□□ -2.27
SKA3Q8IX90 SNORD63-201ENST00000384262 68 ntBASIC0.86□□□□□ -2.27
SKA3Q8IX90 Y_RNA.509-201ENST00000384506 99 ntBASIC0.86□□□□□ -2.27
SKA3Q8IX90 MIR1302-11-201ENST00000408051 138 ntBASIC0.86□□□□□ -2.27
SKA3Q8IX90 MIR1302-9-201ENST00000408365 138 ntBASIC0.86□□□□□ -2.27
SKA3Q8IX90 RNU6ATAC8P-201ENST00000408460 126 ntBASIC0.86□□□□□ -2.27
SKA3Q8IX90 MIR1302-10-201ENST00000408734 138 ntBASIC0.86□□□□□ -2.27
SKA3Q8IX90 AC063976.4-201ENST00000421971 163 ntBASIC0.86□□□□□ -2.27
SKA3Q8IX90 POLR2KP2-201ENST00000438155 177 ntBASIC0.86□□□□□ -2.27
SKA3Q8IX90 Y_RNA.639-201ENST00000458981 102 ntBASIC0.86□□□□□ -2.27
SKA3Q8IX90 U8.19-201ENST00000459095 133 ntBASIC0.86□□□□□ -2.27
SKA3Q8IX90 RPL39P28-201ENST00000465655 155 ntBASIC0.86□□□□□ -2.27
SKA3Q8IX90 RPL23AP54-201ENST00000495129 419 ntBASIC0.86□□□□□ -2.27
SKA3Q8IX90 SNORD45.4-201ENST00000516629 73 ntBASIC0.86□□□□□ -2.27
SKA3Q8IX90 RNU7-116P-201ENST00000516940 62 ntBASIC0.86□□□□□ -2.27
SKA3Q8IX90 AC024405.2-202ENST00000532731 184 ntBASIC0.86□□□□□ -2.27
SKA3Q8IX90 AC127455.1-201ENST00000565496 145 ntBASIC0.86□□□□□ -2.27
SKA3Q8IX90 POLR3GP1-201ENST00000594073 261 ntBASIC0.86□□□□□ -2.27
SKA3Q8IX90 MIR1302-2-201ENST00000607096 138 ntBASIC0.86□□□□□ -2.27
SKA3Q8IX90 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC0.86□□□□□ -2.27
SKA3Q8IX90 MIR548AY-201ENST00000617669 107 ntBASIC0.86□□□□□ -2.27
SKA3Q8IX90 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC0.86□□□□□ -2.27
SKA3Q8IX90 Y_RNA.31-201ENST00000362574 102 ntBASIC0.85□□□□□ -2.27
SKA3Q8IX90 RNU4-80P-201ENST00000363200 141 ntBASIC0.85□□□□□ -2.27
SKA3Q8IX90 RNU1-124P-201ENST00000363861 145 ntBASIC0.85□□□□□ -2.27
SKA3Q8IX90 Y_RNA.286-201ENST00000364813 102 ntBASIC0.85□□□□□ -2.27
SKA3Q8IX90 Y_RNA.363-201ENST00000365529 113 ntBASIC0.85□□□□□ -2.27
SKA3Q8IX90 Y_RNA.424-201ENST00000384063 103 ntBASIC0.85□□□□□ -2.27
SKA3Q8IX90 HMGN2P32-201ENST00000444648 269 ntBASIC0.85□□□□□ -2.27
SKA3Q8IX90 SNORD79.1-201ENST00000516069 84 ntBASIC0.85□□□□□ -2.27
SKA3Q8IX90 SNORD116-28-201ENST00000516123 91 ntBASIC0.85□□□□□ -2.27
SKA3Q8IX90 RNU6-397P-201ENST00000516226 104 ntBASIC0.85□□□□□ -2.27
SKA3Q8IX90 RNU7-115P-201ENST00000516433 55 ntBASIC0.85□□□□□ -2.27
SKA3Q8IX90 RNU6-1046P-201ENST00000516538 107 ntBASIC0.85□□□□□ -2.27
SKA3Q8IX90 AC090142.3-201ENST00000519012 385 ntBASIC0.85□□□□□ -2.27
SKA3Q8IX90 AC136932.1-201ENST00000574771 208 ntBASIC0.85□□□□□ -2.27
SKA3Q8IX90 Y_RNA.148-201ENST00000363557 117 ntBASIC0.84□□□□□ -2.27
SKA3Q8IX90 SNORD114-27-201ENST00000363766 70 ntBASIC0.84□□□□□ -2.27
SKA3Q8IX90 Y_RNA.813-201ENST00000364639 102 ntBASIC0.84□□□□□ -2.27
SKA3Q8IX90 Y_RNA.383-201ENST00000383855 97 ntBASIC0.84□□□□□ -2.27
SKA3Q8IX90 MIR15B-201ENST00000385045 98 ntBASIC0.84□□□□□ -2.27
SKA3Q8IX90 MIR136-201ENST00000385207 82 ntBASIC0.84□□□□□ -2.27
SKA3Q8IX90 RNU6ATAC19P-201ENST00000408096 110 ntBASIC0.84□□□□□ -2.27
SKA3Q8IX90 AC245047.8-201ENST00000456455 284 ntBASIC0.84□□□□□ -2.27
SKA3Q8IX90 HMGN1P10-201ENST00000474557 553 ntBASIC0.84□□□□□ -2.27
SKA3Q8IX90 AC117454.1-201ENST00000491120 168 ntBASIC0.84□□□□□ -2.27
SKA3Q8IX90 Y_RNA.714-201ENST00000517065 90 ntBASIC0.84□□□□□ -2.27
SKA3Q8IX90 MIR3192-201ENST00000584920 77 ntBASIC0.84□□□□□ -2.27
SKA3Q8IX90 AP003357.1-201ENST00000604497 148 ntBASIC0.84□□□□□ -2.27
SKA3Q8IX90 SNORD113-5-201ENST00000607261 78 ntBASIC0.84□□□□□ -2.27
SKA3Q8IX90 AL391903.3-201ENST00000612158 163 ntBASIC0.84□□□□□ -2.27
SKA3Q8IX90 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC0.84□□□□□ -2.27
SKA3Q8IX90 MIR376A1-201ENST00000616574 68 ntBASIC0.84□□□□□ -2.27
SKA3Q8IX90 Y_RNA.203-201ENST00000364106 102 ntBASIC0.83□□□□□ -2.28
SKA3Q8IX90 RNU6-450P-201ENST00000364654 107 ntBASIC0.83□□□□□ -2.28
SKA3Q8IX90 SNORD50B-201ENST00000364995 70 ntBASIC0.83□□□□□ -2.28
SKA3Q8IX90 AC117470.1-201ENST00000381974 330 ntBASIC0.83□□□□□ -2.28
SKA3Q8IX90 SNORD12-201ENST00000391002 90 ntBASIC0.83□□□□□ -2.28
SKA3Q8IX90 SNORA75.2-201ENST00000391138 150 ntBASIC0.83□□□□□ -2.28
SKA3Q8IX90 SNORA75.3-201ENST00000391231 150 ntBASIC0.83□□□□□ -2.28
SKA3Q8IX90 PMCHL1-202ENST00000423102 261 ntBASIC0.83□□□□□ -2.28
SKA3Q8IX90 snoU13.25-201ENST00000458945 104 ntBASIC0.83□□□□□ -2.28
SKA3Q8IX90 MIR4300-201ENST00000581016 96 ntBASIC0.83□□□□□ -2.28
SKA3Q8IX90 MIR4781-201ENST00000585250 76 ntBASIC0.83□□□□□ -2.28
SKA3Q8IX90 AC124312.5-201ENST00000604451 268 ntBASIC0.83□□□□□ -2.28
SKA3Q8IX90 RAC1P9-201ENST00000604990 392 ntBASIC0.83□□□□□ -2.28
SKA3Q8IX90 JPX_2.1-201ENST00000614161 69 ntBASIC0.83□□□□□ -2.28
SKA3Q8IX90 AL160413.1-201ENST00000622780 310 ntBASIC0.83□□□□□ -2.28
SKA3Q8IX90 AC090574.1-201ENST00000623186 233 ntBASIC0.83□□□□□ -2.28
SKA3Q8IX90 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.83□□□□□ -2.28
SKA3Q8IX90 MIR337-201ENST00000362281 93 ntBASIC0.82□□□□□ -2.28
SKA3Q8IX90 SNORD14E-201ENST00000364009 85 ntBASIC0.82□□□□□ -2.28
SKA3Q8IX90 RNU6-1048P-201ENST00000364054 107 ntBASIC0.82□□□□□ -2.28
SKA3Q8IX90 RNU5E-4P-201ENST00000364931 120 ntBASIC0.82□□□□□ -2.28
SKA3Q8IX90 U8.7-201ENST00000364940 136 ntBASIC0.82□□□□□ -2.28
SKA3Q8IX90 RNU6-102P-201ENST00000384485 104 ntBASIC0.82□□□□□ -2.28
SKA3Q8IX90 SNORA80D-201ENST00000384488 135 ntBASIC0.82□□□□□ -2.28
SKA3Q8IX90 UBL5P1-201ENST00000507979 193 ntBASIC0.82□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 191.3 ms