Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 RNU6-1186P-201ENST00000410429 97 ntBASIC2.23□□□□□ -2.05
VPS53Q5VIR6 RNA5SP501-201ENST00000410990 112 ntBASIC2.23□□□□□ -2.05
VPS53Q5VIR6 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC2.23□□□□□ -2.05
VPS53Q5VIR6 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC2.23□□□□□ -2.05
VPS53Q5VIR6 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC2.23□□□□□ -2.05
VPS53Q5VIR6 RPL23AP54-201ENST00000495129 419 ntBASIC2.23□□□□□ -2.05
VPS53Q5VIR6 MRPS17P9-201ENST00000511924 393 ntBASIC2.23□□□□□ -2.05
VPS53Q5VIR6 RNU1-142P-201ENST00000516682 145 ntBASIC2.23□□□□□ -2.05
VPS53Q5VIR6 RNA5SP364-201ENST00000516938 78 ntBASIC2.23□□□□□ -2.05
VPS53Q5VIR6 RNU6-1212P-201ENST00000517023 104 ntBASIC2.23□□□□□ -2.05
VPS53Q5VIR6 AC073413.2-201ENST00000604332 360 ntBASIC2.23□□□□□ -2.05
VPS53Q5VIR6 RNU2-4P-201ENST00000606190 192 ntBASIC2.23□□□□□ -2.05
VPS53Q5VIR6 AL391903.3-201ENST00000612158 163 ntBASIC2.23□□□□□ -2.05
VPS53Q5VIR6 MIR6845-201ENST00000613182 61 ntBASIC2.23□□□□□ -2.05
VPS53Q5VIR6 U6.108-201ENST00000637764 58 ntBASIC2.23□□□□□ -2.05
VPS53Q5VIR6 Y_RNA.24-201ENST00000362508 103 ntBASIC2.22□□□□□ -2.05
VPS53Q5VIR6 Y_RNA.75-201ENST00000362927 97 ntBASIC2.22□□□□□ -2.05
VPS53Q5VIR6 snoU2_19.4-201ENST00000364329 80 ntBASIC2.22□□□□□ -2.05
VPS53Q5VIR6 RNU6-969P-201ENST00000383900 105 ntBASIC2.22□□□□□ -2.05
VPS53Q5VIR6 SNORA48.1-201ENST00000390879 135 ntBASIC2.22□□□□□ -2.05
VPS53Q5VIR6 SNORA40.18-201ENST00000391200 128 ntBASIC2.22□□□□□ -2.05
VPS53Q5VIR6 RNA5SP467-201ENST00000391274 118 ntBASIC2.22□□□□□ -2.05
VPS53Q5VIR6 RNA5SP57-201ENST00000459463 123 ntBASIC2.22□□□□□ -2.05
VPS53Q5VIR6 RPS26P45-201ENST00000471748 340 ntBASIC2.22□□□□□ -2.05
VPS53Q5VIR6 RN7SL274P-201ENST00000492268 272 ntBASIC2.22□□□□□ -2.05
VPS53Q5VIR6 MRPS18CP4-201ENST00000535821 231 ntBASIC2.22□□□□□ -2.05
VPS53Q5VIR6 AC104984.5-201ENST00000586878 94 ntBASIC2.22□□□□□ -2.05
VPS53Q5VIR6 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC2.22□□□□□ -2.05
VPS53Q5VIR6 AL096840.1-201ENST00000603287 93 ntBASIC2.22□□□□□ -2.05
VPS53Q5VIR6 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
VPS53Q5VIR6 RNU6-312P-201ENST00000364629 107 ntBASIC2.21□□□□□ -2.06
VPS53Q5VIR6 RNU6-136P-201ENST00000384663 107 ntBASIC2.21□□□□□ -2.06
VPS53Q5VIR6 MIR583-201ENST00000384846 75 ntBASIC2.21□□□□□ -2.06
VPS53Q5VIR6 AL603908.1-201ENST00000406098 201 ntBASIC2.21□□□□□ -2.06
VPS53Q5VIR6 RN7SKP51-201ENST00000410781 304 ntBASIC2.21□□□□□ -2.06
VPS53Q5VIR6 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC2.21□□□□□ -2.06
VPS53Q5VIR6 RNU6-1096P-201ENST00000517089 102 ntBASIC2.21□□□□□ -2.06
VPS53Q5VIR6 AC100821.1-201ENST00000523153 2479 ntBASIC2.21□□□□□ -2.06
VPS53Q5VIR6 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC2.21□□□□□ -2.06
VPS53Q5VIR6 MIR4744-201ENST00000581563 82 ntBASIC2.21□□□□□ -2.06
VPS53Q5VIR6 5S_rRNA.11-201ENST00000618635 84 ntBASIC2.21□□□□□ -2.06
VPS53Q5VIR6 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
VPS53Q5VIR6 Y_RNA.23-201ENST00000362496 106 ntBASIC2.2□□□□□ -2.06
VPS53Q5VIR6 RNU6-862P-201ENST00000362804 105 ntBASIC2.2□□□□□ -2.06
VPS53Q5VIR6 Y_RNA.182-201ENST00000363880 111 ntBASIC2.2□□□□□ -2.06
VPS53Q5VIR6 Y_RNA.229-201ENST00000364347 113 ntBASIC2.2□□□□□ -2.06
VPS53Q5VIR6 Y_RNA.441-201ENST00000384123 112 ntBASIC2.2□□□□□ -2.06
VPS53Q5VIR6 MIR562-201ENST00000384894 95 ntBASIC2.2□□□□□ -2.06
VPS53Q5VIR6 RNA5SP496-201ENST00000391240 109 ntBASIC2.2□□□□□ -2.06
VPS53Q5VIR6 RN7SKP101-201ENST00000411376 320 ntBASIC2.2□□□□□ -2.06
VPS53Q5VIR6 CYCSP49-201ENST00000420810 319 ntBASIC2.2□□□□□ -2.06
VPS53Q5VIR6 HMGN2P19-201ENST00000425149 265 ntBASIC2.2□□□□□ -2.06
VPS53Q5VIR6 RNU7-94P-201ENST00000459576 63 ntBASIC2.2□□□□□ -2.06
VPS53Q5VIR6 AC074198.2-201ENST00000508153 258 ntBASIC2.2□□□□□ -2.06
VPS53Q5VIR6 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC2.2□□□□□ -2.06
VPS53Q5VIR6 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC2.2□□□□□ -2.06
VPS53Q5VIR6 AC091178.2-201ENST00000584401 117 ntBASIC2.2□□□□□ -2.06
VPS53Q5VIR6 AC022513.1-201ENST00000624512 117 ntBASIC2.2□□□□□ -2.06
VPS53Q5VIR6 AC018630.2-201ENST00000534866 2403 ntBASIC2.2□□□□□ -2.06
VPS53Q5VIR6 AL359851.1-201ENST00000569460 4997 ntBASIC2.19□□□□□ -2.06
VPS53Q5VIR6 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC2.19□□□□□ -2.06
VPS53Q5VIR6 Y_RNA.203-201ENST00000364106 102 ntBASIC2.19□□□□□ -2.06
VPS53Q5VIR6 SNORA16.1-201ENST00000364597 132 ntBASIC2.19□□□□□ -2.06
VPS53Q5VIR6 RNU6-275P-201ENST00000364910 107 ntBASIC2.19□□□□□ -2.06
VPS53Q5VIR6 Y_RNA.412-201ENST00000384001 104 ntBASIC2.19□□□□□ -2.06
VPS53Q5VIR6 Y_RNA.572-201ENST00000384757 98 ntBASIC2.19□□□□□ -2.06
VPS53Q5VIR6 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC2.19□□□□□ -2.06
VPS53Q5VIR6 RNU6-578P-201ENST00000390980 103 ntBASIC2.19□□□□□ -2.06
VPS53Q5VIR6 RNA5SP323-201ENST00000391094 133 ntBASIC2.19□□□□□ -2.06
VPS53Q5VIR6 RNU6-383P-201ENST00000410864 94 ntBASIC2.19□□□□□ -2.06
VPS53Q5VIR6 AC099677.2-201ENST00000436385 175 ntBASIC2.19□□□□□ -2.06
VPS53Q5VIR6 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC2.19□□□□□ -2.06
VPS53Q5VIR6 AC005840.1-201ENST00000498412 377 ntBASIC2.19□□□□□ -2.06
VPS53Q5VIR6 RPL23AP63-201ENST00000498752 471 ntBASIC2.19□□□□□ -2.06
VPS53Q5VIR6 SCARNA8-201ENST00000515924 131 ntBASIC2.19□□□□□ -2.06
VPS53Q5VIR6 AL358944.1-201ENST00000528537 144 ntBASIC2.19□□□□□ -2.06
VPS53Q5VIR6 AC011604.1-201ENST00000545978 196 ntBASIC2.19□□□□□ -2.06
VPS53Q5VIR6 MIR2681-201ENST00000581814 105 ntBASIC2.19□□□□□ -2.06
VPS53Q5VIR6 MIR6079-201ENST00000635807 62 ntBASIC2.19□□□□□ -2.06
VPS53Q5VIR6 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
VPS53Q5VIR6 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC2.18□□□□□ -2.06
VPS53Q5VIR6 AC245060.5-201ENST00000610778 3293 ntBASIC2.18□□□□□ -2.06
VPS53Q5VIR6 SNORA33-201ENST00000363664 130 ntBASIC2.18□□□□□ -2.06
VPS53Q5VIR6 RNY3P5-201ENST00000384127 102 ntBASIC2.18□□□□□ -2.06
VPS53Q5VIR6 MIR504-201ENST00000385065 83 ntBASIC2.18□□□□□ -2.06
VPS53Q5VIR6 RNU6-1228P-201ENST00000391014 107 ntBASIC2.18□□□□□ -2.06
VPS53Q5VIR6 MIR1278-201ENST00000408753 81 ntBASIC2.18□□□□□ -2.06
VPS53Q5VIR6 AC091021.1-201ENST00000468051 388 ntBASIC2.18□□□□□ -2.06
VPS53Q5VIR6 Y_RNA.797-201ENST00000515977 94 ntBASIC2.18□□□□□ -2.06
VPS53Q5VIR6 RNU6-341P-201ENST00000516973 96 ntBASIC2.18□□□□□ -2.06
VPS53Q5VIR6 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC2.18□□□□□ -2.06
VPS53Q5VIR6 AL929325.1-201ENST00000603096 117 ntBASIC2.18□□□□□ -2.06
VPS53Q5VIR6 AL021707.8-201ENST00000609428 183 ntBASIC2.18□□□□□ -2.06
VPS53Q5VIR6 AC108706.1-201ENST00000611053 297 ntBASIC2.18□□□□□ -2.06
VPS53Q5VIR6 MIR7843-201ENST00000622274 79 ntBASIC2.18□□□□□ -2.06
VPS53Q5VIR6 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
VPS53Q5VIR6 MIR676-201ENST00000390702 67 ntBASIC2.17□□□□□ -2.06
VPS53Q5VIR6 SUMO1P3-201ENST00000439961 304 ntBASIC2.17□□□□□ -2.06
VPS53Q5VIR6 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC2.17□□□□□ -2.06
VPS53Q5VIR6 AC245047.8-201ENST00000456455 284 ntBASIC2.17□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 101.2 ms