Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 AC100767.1-201ENST00000528178 123 ntBASIC2.46□□□□□ -2.02
SF3A1Q15459 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC2.46□□□□□ -2.02
SF3A1Q15459 AL365265.1-201ENST00000621045 234 ntBASIC2.46□□□□□ -2.02
SF3A1Q15459 AL513423.1-201ENST00000621695 132 ntBASIC2.46□□□□□ -2.02
SF3A1Q15459 AC095038.3-201ENST00000634439 195 ntBASIC2.46□□□□□ -2.02
SF3A1Q15459 RNU6-1084P-201ENST00000362498 107 ntBASIC2.45□□□□□ -2.02
SF3A1Q15459 Y_RNA.24-201ENST00000362508 103 ntBASIC2.45□□□□□ -2.02
SF3A1Q15459 Y_RNA.796-201ENST00000364268 102 ntBASIC2.45□□□□□ -2.02
SF3A1Q15459 Y_RNA.262-201ENST00000364641 102 ntBASIC2.45□□□□□ -2.02
SF3A1Q15459 Y_RNA.799-201ENST00000364992 102 ntBASIC2.45□□□□□ -2.02
SF3A1Q15459 Y_RNA.304-201ENST00000365011 112 ntBASIC2.45□□□□□ -2.02
SF3A1Q15459 RNU6-424P-201ENST00000384367 105 ntBASIC2.45□□□□□ -2.02
SF3A1Q15459 MT-TG-201ENST00000387429 68 ntBASIC2.45□□□□□ -2.02
SF3A1Q15459 MIR526A2-201ENST00000390198 65 ntBASIC2.45□□□□□ -2.02
SF3A1Q15459 RNA5SP489-201ENST00000410986 109 ntBASIC2.45□□□□□ -2.02
SF3A1Q15459 AC023449.1-201ENST00000454464 154 ntBASIC2.45□□□□□ -2.02
SF3A1Q15459 RNU7-12P-201ENST00000516030 62 ntBASIC2.45□□□□□ -2.02
SF3A1Q15459 RNU1-40P-201ENST00000516816 164 ntBASIC2.45□□□□□ -2.02
SF3A1Q15459 RNU1-97P-201ENST00000516872 164 ntBASIC2.45□□□□□ -2.02
SF3A1Q15459 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC2.45□□□□□ -2.02
SF3A1Q15459 ICE2P2-201ENST00000483823 2787 ntBASIC2.45□□□□□ -2.02
SF3A1Q15459 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.45□□□□□ -2.02
SF3A1Q15459 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
SF3A1Q15459 RNU6-379P-201ENST00000363813 104 ntBASIC2.44□□□□□ -2.02
SF3A1Q15459 RNA5SP37-201ENST00000365420 130 ntBASIC2.44□□□□□ -2.02
SF3A1Q15459 RNU6-969P-201ENST00000383900 105 ntBASIC2.44□□□□□ -2.02
SF3A1Q15459 MIR802-201ENST00000390235 94 ntBASIC2.44□□□□□ -2.02
SF3A1Q15459 RPL30P13-201ENST00000418873 348 ntBASIC2.44□□□□□ -2.02
SF3A1Q15459 PIGPP3-201ENST00000425307 415 ntBASIC2.44□□□□□ -2.02
SF3A1Q15459 AL356320.1-201ENST00000429616 163 ntBASIC2.44□□□□□ -2.02
SF3A1Q15459 MIR4778-201ENST00000577635 80 ntBASIC2.44□□□□□ -2.02
SF3A1Q15459 AC120024.3-201ENST00000603167 156 ntBASIC2.44□□□□□ -2.02
SF3A1Q15459 MIR8063-201ENST00000621930 81 ntBASIC2.44□□□□□ -2.02
SF3A1Q15459 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC2.44□□□□□ -2.02
SF3A1Q15459 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC2.43□□□□□ -2.02
SF3A1Q15459 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.43□□□□□ -2.02
SF3A1Q15459 MIR424-201ENST00000362227 98 ntBASIC2.43□□□□□ -2.02
SF3A1Q15459 RNU6-1123P-201ENST00000362347 106 ntBASIC2.43□□□□□ -2.02
SF3A1Q15459 U8.5-201ENST00000364528 136 ntBASIC2.43□□□□□ -2.02
SF3A1Q15459 MIR522-201ENST00000385071 87 ntBASIC2.43□□□□□ -2.02
SF3A1Q15459 RN7SKP223-201ENST00000410582 62 ntBASIC2.43□□□□□ -2.02
SF3A1Q15459 CYCTP-201ENST00000504253 315 ntBASIC2.43□□□□□ -2.02
SF3A1Q15459 RNU6-388P-201ENST00000517012 105 ntBASIC2.43□□□□□ -2.02
SF3A1Q15459 RNU6-389P-201ENST00000517048 105 ntBASIC2.43□□□□□ -2.02
SF3A1Q15459 RNU6-1116P-201ENST00000517269 99 ntBASIC2.43□□□□□ -2.02
SF3A1Q15459 MIR4448-201ENST00000584360 86 ntBASIC2.43□□□□□ -2.02
SF3A1Q15459 MIR660-201ENST00000385235 97 ntBASIC2.42□□□□□ -2.02
SF3A1Q15459 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.42□□□□□ -2.02
SF3A1Q15459 AL021397.1-201ENST00000451806 248 ntBASIC2.42□□□□□ -2.02
SF3A1Q15459 snoU13.9-201ENST00000458927 103 ntBASIC2.42□□□□□ -2.02
SF3A1Q15459 AC025033.1-201ENST00000463883 194 ntBASIC2.42□□□□□ -2.02
SF3A1Q15459 AC005908.1-201ENST00000468701 347 ntBASIC2.42□□□□□ -2.02
SF3A1Q15459 DEFB122-202ENST00000569013 197 ntBASIC2.42□□□□□ -2.02
SF3A1Q15459 MIR6873-201ENST00000622788 63 ntBASIC2.42□□□□□ -2.02
SF3A1Q15459 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC2.42□□□□□ -2.02
SF3A1Q15459 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
SF3A1Q15459 Y_RNA.308-201ENST00000365043 101 ntBASIC2.41□□□□□ -2.02
SF3A1Q15459 RNA5SP259-201ENST00000365541 109 ntBASIC2.41□□□□□ -2.02
SF3A1Q15459 RNU4-17P-201ENST00000365598 141 ntBASIC2.41□□□□□ -2.02
SF3A1Q15459 Y_RNA.515-201ENST00000384535 112 ntBASIC2.41□□□□□ -2.02
SF3A1Q15459 Y_RNA.572-201ENST00000384757 98 ntBASIC2.41□□□□□ -2.02
SF3A1Q15459 MIR513A1-201ENST00000385138 129 ntBASIC2.41□□□□□ -2.02
SF3A1Q15459 SNORD58.1-201ENST00000391313 66 ntBASIC2.41□□□□□ -2.02
SF3A1Q15459 AC004965.1-201ENST00000413033 213 ntBASIC2.41□□□□□ -2.02
SF3A1Q15459 RNU6-717P-201ENST00000459076 104 ntBASIC2.41□□□□□ -2.02
SF3A1Q15459 SUMO2P16-201ENST00000519475 264 ntBASIC2.41□□□□□ -2.02
SF3A1Q15459 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC2.41□□□□□ -2.02
SF3A1Q15459 AC002984.1-201ENST00000591692 448 ntBASIC2.41□□□□□ -2.02
SF3A1Q15459 AL049861.1-201ENST00000603130 150 ntBASIC2.41□□□□□ -2.02
SF3A1Q15459 AC078938.1-201ENST00000620993 318 ntBASIC2.41□□□□□ -2.02
SF3A1Q15459 RNA5SP160-201ENST00000364866 120 ntBASIC2.4□□□□□ -2.03
SF3A1Q15459 snoU2-30.1-201ENST00000365012 70 ntBASIC2.4□□□□□ -2.03
SF3A1Q15459 RNY4P28-201ENST00000365281 93 ntBASIC2.4□□□□□ -2.03
SF3A1Q15459 Y_RNA.552-201ENST00000384665 112 ntBASIC2.4□□□□□ -2.03
SF3A1Q15459 MIR626-201ENST00000385032 94 ntBASIC2.4□□□□□ -2.03
SF3A1Q15459 MIR1298-201ENST00000408783 112 ntBASIC2.4□□□□□ -2.03
SF3A1Q15459 Y_RNA.626-201ENST00000411288 95 ntBASIC2.4□□□□□ -2.03
SF3A1Q15459 HSPE1P24-201ENST00000450782 238 ntBASIC2.4□□□□□ -2.03
SF3A1Q15459 snoU13.23-201ENST00000458863 104 ntBASIC2.4□□□□□ -2.03
SF3A1Q15459 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC2.4□□□□□ -2.03
SF3A1Q15459 AC114811.1-201ENST00000507207 168 ntBASIC2.4□□□□□ -2.03
SF3A1Q15459 RNU6-1007P-201ENST00000516586 107 ntBASIC2.4□□□□□ -2.03
SF3A1Q15459 MIR4762-201ENST00000585261 75 ntBASIC2.4□□□□□ -2.03
SF3A1Q15459 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.39□□□□□ -2.03
SF3A1Q15459 MIRLET7C-201ENST00000362160 84 ntBASIC2.39□□□□□ -2.03
SF3A1Q15459 Y_RNA.199-201ENST00000364014 102 ntBASIC2.39□□□□□ -2.03
SF3A1Q15459 RNA5SP496-201ENST00000391240 109 ntBASIC2.39□□□□□ -2.03
SF3A1Q15459 MIR891A-201ENST00000401237 79 ntBASIC2.39□□□□□ -2.03
SF3A1Q15459 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
SF3A1Q15459 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC2.39□□□□□ -2.03
SF3A1Q15459 AC093850.1-201ENST00000454121 251 ntBASIC2.39□□□□□ -2.03
SF3A1Q15459 SNORD11-201ENST00000459124 84 ntBASIC2.39□□□□□ -2.03
SF3A1Q15459 MIR1273D-201ENST00000577266 86 ntBASIC2.39□□□□□ -2.03
SF3A1Q15459 MIR3198-2-201ENST00000577868 80 ntBASIC2.39□□□□□ -2.03
SF3A1Q15459 AC011921.3-201ENST00000605540 361 ntBASIC2.39□□□□□ -2.03
SF3A1Q15459 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
SF3A1Q15459 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC2.38□□□□□ -2.03
SF3A1Q15459 SNORD14E-201ENST00000364009 85 ntBASIC2.38□□□□□ -2.03
SF3A1Q15459 Y_RNA.200-201ENST00000364018 102 ntBASIC2.38□□□□□ -2.03
SF3A1Q15459 SNORA67.3-201ENST00000384366 140 ntBASIC2.38□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 103.1 ms