Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 U2.20-201ENST00000613956 192 ntBASIC2.36□□□□□ -2.03
COL4A3Q01955 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC2.36□□□□□ -2.03
COL4A3Q01955 U6.73-201ENST00000619194 103 ntBASIC2.36□□□□□ -2.03
COL4A3Q01955 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
COL4A3Q01955 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC2.36□□□□□ -2.03
COL4A3Q01955 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC2.36□□□□□ -2.03
COL4A3Q01955 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC2.36□□□□□ -2.03
COL4A3Q01955 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC2.35□□□□□ -2.03
COL4A3Q01955 RNU1-22P-201ENST00000363334 158 ntBASIC2.35□□□□□ -2.03
COL4A3Q01955 RNU6-978P-201ENST00000364371 103 ntBASIC2.35□□□□□ -2.03
COL4A3Q01955 SNORA67.3-201ENST00000384366 140 ntBASIC2.35□□□□□ -2.03
COL4A3Q01955 RNU6-429P-201ENST00000384582 108 ntBASIC2.35□□□□□ -2.03
COL4A3Q01955 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC2.35□□□□□ -2.03
COL4A3Q01955 AC123900.1-201ENST00000420390 96 ntBASIC2.35□□□□□ -2.03
COL4A3Q01955 CYP2C59P-201ENST00000457790 269 ntBASIC2.35□□□□□ -2.03
COL4A3Q01955 RNU6-1146P-201ENST00000516282 102 ntBASIC2.35□□□□□ -2.03
COL4A3Q01955 RNU7-149P-201ENST00000516739 59 ntBASIC2.35□□□□□ -2.03
COL4A3Q01955 MIR6129-201ENST00000616087 109 ntBASIC2.35□□□□□ -2.03
COL4A3Q01955 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC2.35□□□□□ -2.03
COL4A3Q01955 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.35□□□□□ -2.03
COL4A3Q01955 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
COL4A3Q01955 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.35□□□□□ -2.03
COL4A3Q01955 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC2.34□□□□□ -2.03
COL4A3Q01955 SNORA18.4-201ENST00000516440 124 ntBASIC2.34□□□□□ -2.03
COL4A3Q01955 RNU6-126P-201ENST00000516685 103 ntBASIC2.34□□□□□ -2.03
COL4A3Q01955 Y_RNA.712-201ENST00000517011 92 ntBASIC2.34□□□□□ -2.03
COL4A3Q01955 RNU6-365P-201ENST00000517113 106 ntBASIC2.34□□□□□ -2.03
COL4A3Q01955 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC2.34□□□□□ -2.03
COL4A3Q01955 MIR5007-201ENST00000583098 95 ntBASIC2.34□□□□□ -2.03
COL4A3Q01955 AC002984.1-201ENST00000591692 448 ntBASIC2.34□□□□□ -2.03
COL4A3Q01955 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC2.34□□□□□ -2.04
COL4A3Q01955 SNORA68.1-201ENST00000364537 132 ntBASIC2.34□□□□□ -2.04
COL4A3Q01955 Y_RNA.332-201ENST00000365271 113 ntBASIC2.34□□□□□ -2.04
COL4A3Q01955 SNORA22-201ENST00000383907 134 ntBASIC2.34□□□□□ -2.04
COL4A3Q01955 RNU6-476P-201ENST00000384726 107 ntBASIC2.34□□□□□ -2.04
COL4A3Q01955 MIR95-201ENST00000385072 81 ntBASIC2.34□□□□□ -2.04
COL4A3Q01955 RNY4P18-201ENST00000391107 89 ntBASIC2.34□□□□□ -2.04
COL4A3Q01955 AL603914.1-201ENST00000401964 204 ntBASIC2.34□□□□□ -2.04
COL4A3Q01955 FO393413.1-201ENST00000402892 195 ntBASIC2.34□□□□□ -2.04
COL4A3Q01955 MLLT10P1-201ENST00000418346 262 ntBASIC2.34□□□□□ -2.04
COL4A3Q01955 RPL39P40-201ENST00000445481 146 ntBASIC2.34□□□□□ -2.04
COL4A3Q01955 SNORD11-201ENST00000459124 84 ntBASIC2.34□□□□□ -2.04
COL4A3Q01955 AC007536.1-201ENST00000533382 349 ntBASIC2.34□□□□□ -2.04
COL4A3Q01955 MTND5P34-201ENST00000568888 325 ntBASIC2.34□□□□□ -2.04
COL4A3Q01955 AC105245.1-201ENST00000581934 244 ntBASIC2.34□□□□□ -2.04
COL4A3Q01955 AC108081.1-201ENST00000604358 221 ntBASIC2.34□□□□□ -2.04
COL4A3Q01955 JPX_2.1-201ENST00000614161 69 ntBASIC2.34□□□□□ -2.04
COL4A3Q01955 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.34□□□□□ -2.04
COL4A3Q01955 Y_RNA.91-201ENST00000363042 107 ntBASIC2.33□□□□□ -2.04
COL4A3Q01955 Y_RNA.114-201ENST00000363265 113 ntBASIC2.33□□□□□ -2.04
COL4A3Q01955 RNU6-309P-201ENST00000364573 106 ntBASIC2.33□□□□□ -2.04
COL4A3Q01955 MIR561-201ENST00000385216 97 ntBASIC2.33□□□□□ -2.04
COL4A3Q01955 MIR591-201ENST00000385290 95 ntBASIC2.33□□□□□ -2.04
COL4A3Q01955 ZNF355P-201ENST00000427301 3216 ntBASIC2.33□□□□□ -2.04
COL4A3Q01955 RPS15AP28-201ENST00000435088 386 ntBASIC2.33□□□□□ -2.04
COL4A3Q01955 AL158147.1-201ENST00000443970 75 ntBASIC2.33□□□□□ -2.04
COL4A3Q01955 OR9P1P-201ENST00000496431 281 ntBASIC2.33□□□□□ -2.04
COL4A3Q01955 Y_RNA.709-201ENST00000516952 92 ntBASIC2.33□□□□□ -2.04
COL4A3Q01955 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC2.33□□□□□ -2.04
COL4A3Q01955 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC2.33□□□□□ -2.04
COL4A3Q01955 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC2.33□□□□□ -2.04
COL4A3Q01955 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.33□□□□□ -2.04
COL4A3Q01955 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC2.32□□□□□ -2.04
COL4A3Q01955 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.32□□□□□ -2.04
COL4A3Q01955 Y_RNA.486-201ENST00000384398 107 ntBASIC2.32□□□□□ -2.04
COL4A3Q01955 RNU6-1186P-201ENST00000410429 97 ntBASIC2.32□□□□□ -2.04
COL4A3Q01955 AL158823.1-201ENST00000418441 478 ntBASIC2.32□□□□□ -2.04
COL4A3Q01955 AC060773.1-201ENST00000421698 310 ntBASIC2.32□□□□□ -2.04
COL4A3Q01955 SEM1P1-201ENST00000506694 209 ntBASIC2.32□□□□□ -2.04
COL4A3Q01955 MIR4662B-201ENST00000579498 81 ntBASIC2.32□□□□□ -2.04
COL4A3Q01955 AL355297.2-201ENST00000604792 129 ntBASIC2.32□□□□□ -2.04
COL4A3Q01955 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
COL4A3Q01955 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.32□□□□□ -2.04
COL4A3Q01955 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
COL4A3Q01955 RNU1-96P-201ENST00000364163 162 ntBASIC2.31□□□□□ -2.04
COL4A3Q01955 RNU6-1138P-201ENST00000365359 106 ntBASIC2.31□□□□□ -2.04
COL4A3Q01955 DEFA7P-201ENST00000382676 285 ntBASIC2.31□□□□□ -2.04
COL4A3Q01955 SNORA40.5-201ENST00000391061 128 ntBASIC2.31□□□□□ -2.04
COL4A3Q01955 RNU11-5P-201ENST00000391216 129 ntBASIC2.31□□□□□ -2.04
COL4A3Q01955 RNU6-504P-201ENST00000516568 104 ntBASIC2.31□□□□□ -2.04
COL4A3Q01955 PRELID2P1-201ENST00000552837 301 ntBASIC2.31□□□□□ -2.04
COL4A3Q01955 AC097639.2-201ENST00000603159 172 ntBASIC2.31□□□□□ -2.04
COL4A3Q01955 AL359821.1-201ENST00000605519 182 ntBASIC2.31□□□□□ -2.04
COL4A3Q01955 AL137847.3-201ENST00000611521 109 ntBASIC2.31□□□□□ -2.04
COL4A3Q01955 AC095038.3-201ENST00000634439 195 ntBASIC2.31□□□□□ -2.04
COL4A3Q01955 MIR3914-2-201ENST00000637339 95 ntBASIC2.31□□□□□ -2.04
COL4A3Q01955 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
COL4A3Q01955 AP001486.2-201ENST00000561652 5113 ntBASIC2.31□□□□□ -2.04
COL4A3Q01955 MIR520G-201ENST00000385064 90 ntBASIC2.31□□□□□ -2.04
COL4A3Q01955 U8.13-201ENST00000390842 128 ntBASIC2.31□□□□□ -2.04
COL4A3Q01955 Y_RNA.621-201ENST00000411065 96 ntBASIC2.31□□□□□ -2.04
COL4A3Q01955 RNU5E-3P-201ENST00000515913 68 ntBASIC2.31□□□□□ -2.04
COL4A3Q01955 RNU6-1061P-201ENST00000516530 99 ntBASIC2.31□□□□□ -2.04
COL4A3Q01955 Y_RNA.690-201ENST00000516603 95 ntBASIC2.31□□□□□ -2.04
COL4A3Q01955 AL356280.1-201ENST00000603614 379 ntBASIC2.31□□□□□ -2.04
COL4A3Q01955 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC2.31□□□□□ -2.04
COL4A3Q01955 AL161431.1-201ENST00000618966 4205 ntBASIC2.3□□□□□ -2.04
COL4A3Q01955 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
COL4A3Q01955 MIR378A-201ENST00000362177 66 ntBASIC2.3□□□□□ -2.04
COL4A3Q01955 SNORA63.4-201ENST00000362763 126 ntBASIC2.3□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 103.9 ms