Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 Y_RNA.525-201ENST00000384570 113 ntBASIC2□□□□□ -2.09
HOXA4Q00056 SNORD37.2-201ENST00000391075 66 ntBASIC2□□□□□ -2.09
HOXA4Q00056 SNORA79-201ENST00000408376 140 ntBASIC2□□□□□ -2.09
HOXA4Q00056 SNORA11.4-201ENST00000408823 129 ntBASIC2□□□□□ -2.09
HOXA4Q00056 RNU6-588P-201ENST00000410281 105 ntBASIC2□□□□□ -2.09
HOXA4Q00056 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC2□□□□□ -2.09
HOXA4Q00056 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC2□□□□□ -2.09
HOXA4Q00056 MTND4LP9-201ENST00000427694 174 ntBASIC2□□□□□ -2.09
HOXA4Q00056 AP002004.2-201ENST00000531656 154 ntBASIC2□□□□□ -2.09
HOXA4Q00056 AC103810.6-201ENST00000606708 136 ntBASIC2□□□□□ -2.09
HOXA4Q00056 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC2□□□□□ -2.09
HOXA4Q00056 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2□□□□□ -2.09
HOXA4Q00056 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
HOXA4Q00056 RNU6-199P-201ENST00000362954 107 ntBASIC1.99□□□□□ -2.09
HOXA4Q00056 RNU6-1082P-201ENST00000364574 107 ntBASIC1.99□□□□□ -2.09
HOXA4Q00056 Y_RNA.634-201ENST00000364811 113 ntBASIC1.99□□□□□ -2.09
HOXA4Q00056 Y_RNA.393-201ENST00000383936 102 ntBASIC1.99□□□□□ -2.09
HOXA4Q00056 MIR522-201ENST00000385071 87 ntBASIC1.99□□□□□ -2.09
HOXA4Q00056 SNORD72-201ENST00000390994 80 ntBASIC1.99□□□□□ -2.09
HOXA4Q00056 RNU4ATAC16P-201ENST00000408512 126 ntBASIC1.99□□□□□ -2.09
HOXA4Q00056 RNA5SP181-201ENST00000410246 98 ntBASIC1.99□□□□□ -2.09
HOXA4Q00056 RNU2-70P-201ENST00000410718 179 ntBASIC1.99□□□□□ -2.09
HOXA4Q00056 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.99□□□□□ -2.09
HOXA4Q00056 AC245047.4-201ENST00000433189 144 ntBASIC1.99□□□□□ -2.09
HOXA4Q00056 RNU7-197P-201ENST00000458836 62 ntBASIC1.99□□□□□ -2.09
HOXA4Q00056 AC008413.1-201ENST00000511864 177 ntBASIC1.99□□□□□ -2.09
HOXA4Q00056 RNU2-56P-201ENST00000516826 190 ntBASIC1.99□□□□□ -2.09
HOXA4Q00056 RNU6-1234P-201ENST00000516877 103 ntBASIC1.99□□□□□ -2.09
HOXA4Q00056 RNU6-971P-201ENST00000516920 106 ntBASIC1.99□□□□□ -2.09
HOXA4Q00056 AC120024.3-201ENST00000603167 156 ntBASIC1.99□□□□□ -2.09
HOXA4Q00056 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC1.99□□□□□ -2.09
HOXA4Q00056 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
HOXA4Q00056 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
HOXA4Q00056 AL391516.1-201ENST00000554380 2449 ntBASIC1.98□□□□□ -2.09
HOXA4Q00056 MIR6073-201ENST00000352083 89 ntBASIC1.98□□□□□ -2.09
HOXA4Q00056 SNORA3A-201ENST00000364113 130 ntBASIC1.98□□□□□ -2.09
HOXA4Q00056 RNU6-978P-201ENST00000364371 103 ntBASIC1.98□□□□□ -2.09
HOXA4Q00056 RNU6-1019P-201ENST00000364424 107 ntBASIC1.98□□□□□ -2.09
HOXA4Q00056 RNU6-1138P-201ENST00000365359 106 ntBASIC1.98□□□□□ -2.09
HOXA4Q00056 RNU6-460P-201ENST00000391158 108 ntBASIC1.98□□□□□ -2.09
HOXA4Q00056 RNU2-51P-201ENST00000410708 197 ntBASIC1.98□□□□□ -2.09
HOXA4Q00056 AC245047.3-201ENST00000429428 127 ntBASIC1.98□□□□□ -2.09
HOXA4Q00056 MRPS17P9-201ENST00000511924 393 ntBASIC1.98□□□□□ -2.09
HOXA4Q00056 RNA5SP153-201ENST00000516498 76 ntBASIC1.98□□□□□ -2.09
HOXA4Q00056 RNA5SP281-201ENST00000516504 135 ntBASIC1.98□□□□□ -2.09
HOXA4Q00056 AL160236.1-201ENST00000556317 195 ntBASIC1.98□□□□□ -2.09
HOXA4Q00056 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC1.98□□□□□ -2.09
HOXA4Q00056 AC112693.2-201ENST00000556538 232 ntBASIC1.98□□□□□ -2.09
HOXA4Q00056 AL137847.3-201ENST00000611521 109 ntBASIC1.98□□□□□ -2.09
HOXA4Q00056 AC091895.1-201ENST00000624494 256 ntBASIC1.98□□□□□ -2.09
HOXA4Q00056 MIR1291-201ENST00000627649 87 ntBASIC1.98□□□□□ -2.09
HOXA4Q00056 CTSLP2-204ENST00000629029 392 ntBASIC1.98□□□□□ -2.09
HOXA4Q00056 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
HOXA4Q00056 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC1.98□□□□□ -2.09
HOXA4Q00056 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC1.97□□□□□ -2.09
HOXA4Q00056 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
HOXA4Q00056 SNORD68-201ENST00000363214 84 ntBASIC1.97□□□□□ -2.09
HOXA4Q00056 SNORD50B-201ENST00000364995 70 ntBASIC1.97□□□□□ -2.09
HOXA4Q00056 RNU6-440P-201ENST00000390882 105 ntBASIC1.97□□□□□ -2.09
HOXA4Q00056 MIR513C-201ENST00000401352 84 ntBASIC1.97□□□□□ -2.09
HOXA4Q00056 FTH1P12-201ENST00000432137 551 ntBASIC1.97□□□□□ -2.09
HOXA4Q00056 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.97□□□□□ -2.09
HOXA4Q00056 AC092991.1-201ENST00000477176 376 ntBASIC1.97□□□□□ -2.09
HOXA4Q00056 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC1.97□□□□□ -2.09
HOXA4Q00056 SNORA31.10-201ENST00000516482 106 ntBASIC1.97□□□□□ -2.09
HOXA4Q00056 MIR3646-201ENST00000578301 84 ntBASIC1.97□□□□□ -2.09
HOXA4Q00056 AC069114.2-201ENST00000604699 304 ntBASIC1.97□□□□□ -2.09
HOXA4Q00056 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC1.97□□□□□ -2.09
HOXA4Q00056 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC1.97□□□□□ -2.09
HOXA4Q00056 MIR8054-201ENST00000620877 86 ntBASIC1.97□□□□□ -2.09
HOXA4Q00056 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.97□□□□□ -2.09
HOXA4Q00056 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.97□□□□□ -2.09
HOXA4Q00056 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.96□□□□□ -2.1
HOXA4Q00056 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.96□□□□□ -2.1
HOXA4Q00056 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
HOXA4Q00056 AC010332.2-201ENST00000613083 1904 ntBASIC1.96□□□□□ -2.1
HOXA4Q00056 RNU6-597P-201ENST00000365620 102 ntBASIC1.96□□□□□ -2.1
HOXA4Q00056 RNU1-52P-201ENST00000384190 164 ntBASIC1.96□□□□□ -2.1
HOXA4Q00056 RNU6-1117P-201ENST00000384525 104 ntBASIC1.96□□□□□ -2.1
HOXA4Q00056 Y_RNA.542-201ENST00000384641 111 ntBASIC1.96□□□□□ -2.1
HOXA4Q00056 RNU6-1168P-201ENST00000390831 104 ntBASIC1.96□□□□□ -2.1
HOXA4Q00056 RNA5SP501-201ENST00000410990 112 ntBASIC1.96□□□□□ -2.1
HOXA4Q00056 RNA5SP270-201ENST00000411361 118 ntBASIC1.96□□□□□ -2.1
HOXA4Q00056 RPL30P13-201ENST00000418873 348 ntBASIC1.96□□□□□ -2.1
HOXA4Q00056 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.96□□□□□ -2.1
HOXA4Q00056 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC1.96□□□□□ -2.1
HOXA4Q00056 RPS12P2-201ENST00000439728 269 ntBASIC1.96□□□□□ -2.1
HOXA4Q00056 AC008507.4-201ENST00000585464 127 ntBASIC1.96□□□□□ -2.1
HOXA4Q00056 AC097639.2-201ENST00000603159 172 ntBASIC1.96□□□□□ -2.1
HOXA4Q00056 AC067747.1-201ENST00000608026 250 ntBASIC1.96□□□□□ -2.1
HOXA4Q00056 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
HOXA4Q00056 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.95□□□□□ -2.1
HOXA4Q00056 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC1.95□□□□□ -2.1
HOXA4Q00056 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
HOXA4Q00056 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
HOXA4Q00056 Y_RNA.265-201ENST00000364677 108 ntBASIC1.95□□□□□ -2.1
HOXA4Q00056 Y_RNA.294-201ENST00000364916 102 ntBASIC1.95□□□□□ -2.1
HOXA4Q00056 Y_RNA.420-201ENST00000384043 110 ntBASIC1.95□□□□□ -2.1
HOXA4Q00056 RNA5SP465-201ENST00000391195 109 ntBASIC1.95□□□□□ -2.1
HOXA4Q00056 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC1.95□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 86.1 ms