Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC096725.1-201ENST00000514266 313 ntBASIC2.83□□□□□ -1.96
LIG3P49916 RN7SKP179-201ENST00000516126 217 ntBASIC2.83□□□□□ -1.96
LIG3P49916 RNU7-28P-201ENST00000516759 62 ntBASIC2.83□□□□□ -1.96
LIG3P49916 RNU6-1270P-201ENST00000517128 108 ntBASIC2.83□□□□□ -1.96
LIG3P49916 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC2.83□□□□□ -1.96
LIG3P49916 MIR4762-201ENST00000585261 75 ntBASIC2.83□□□□□ -1.96
LIG3P49916 AL137847.3-201ENST00000611521 109 ntBASIC2.83□□□□□ -1.96
LIG3P49916 RNU6-1084P-201ENST00000362498 107 ntBASIC2.82□□□□□ -1.96
LIG3P49916 SNORD14E-201ENST00000364009 85 ntBASIC2.82□□□□□ -1.96
LIG3P49916 SNORD61-201ENST00000384252 73 ntBASIC2.82□□□□□ -1.96
LIG3P49916 RNA5SP109-201ENST00000391010 116 ntBASIC2.82□□□□□ -1.96
LIG3P49916 RNU11-3P-201ENST00000391111 133 ntBASIC2.82□□□□□ -1.96
LIG3P49916 SNRPGP13-201ENST00000442212 177 ntBASIC2.82□□□□□ -1.96
LIG3P49916 AL606517.2-201ENST00000442855 241 ntBASIC2.82□□□□□ -1.96
LIG3P49916 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC2.82□□□□□ -1.96
LIG3P49916 RN7SKP132-201ENST00000516001 208 ntBASIC2.82□□□□□ -1.96
LIG3P49916 Y_RNA.686-201ENST00000516548 134 ntBASIC2.82□□□□□ -1.96
LIG3P49916 MIR3129-201ENST00000581095 76 ntBASIC2.82□□□□□ -1.96
LIG3P49916 MIR4658-201ENST00000584344 65 ntBASIC2.82□□□□□ -1.96
LIG3P49916 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC2.82□□□□□ -1.96
LIG3P49916 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC2.82□□□□□ -1.96
LIG3P49916 FO624990.1-201ENST00000636373 85 ntBASIC2.82□□□□□ -1.96
LIG3P49916 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
LIG3P49916 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
LIG3P49916 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.82□□□□□ -1.96
LIG3P49916 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
LIG3P49916 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
LIG3P49916 Y_RNA.273-201ENST00000364703 102 ntBASIC2.81□□□□□ -1.96
LIG3P49916 snoU2-30.1-201ENST00000365012 70 ntBASIC2.81□□□□□ -1.96
LIG3P49916 RNU6-442P-201ENST00000383968 104 ntBASIC2.81□□□□□ -1.96
LIG3P49916 Y_RNA.666-201ENST00000516187 112 ntBASIC2.81□□□□□ -1.96
LIG3P49916 RNA5SP402-201ENST00000517148 110 ntBASIC2.81□□□□□ -1.96
LIG3P49916 AC084364.2-201ENST00000546924 395 ntBASIC2.81□□□□□ -1.96
LIG3P49916 AC090049.2-201ENST00000550377 109 ntBASIC2.81□□□□□ -1.96
LIG3P49916 MIR4446-201ENST00000578505 67 ntBASIC2.81□□□□□ -1.96
LIG3P49916 MIR5094-201ENST00000578766 85 ntBASIC2.81□□□□□ -1.96
LIG3P49916 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC2.81□□□□□ -1.96
LIG3P49916 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
LIG3P49916 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC2.8□□□□□ -1.96
LIG3P49916 Y_RNA.52-201ENST00000362760 96 ntBASIC2.8□□□□□ -1.96
LIG3P49916 SNORA1-201ENST00000384107 130 ntBASIC2.8□□□□□ -1.96
LIG3P49916 MIR597-201ENST00000384968 97 ntBASIC2.8□□□□□ -1.96
LIG3P49916 RNA5SP465-201ENST00000391195 109 ntBASIC2.8□□□□□ -1.96
LIG3P49916 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC2.8□□□□□ -1.96
LIG3P49916 RAB6C-AS1-202ENST00000433431 123 ntBASIC2.8□□□□□ -1.96
LIG3P49916 AC003982.1-202ENST00000469928 248 ntBASIC2.8□□□□□ -1.96
LIG3P49916 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.8□□□□□ -1.96
LIG3P49916 RNA5SP356-201ENST00000515972 94 ntBASIC2.8□□□□□ -1.96
LIG3P49916 RNU6-693P-201ENST00000516134 107 ntBASIC2.8□□□□□ -1.96
LIG3P49916 RNU6-659P-201ENST00000516454 104 ntBASIC2.8□□□□□ -1.96
LIG3P49916 AC079600.2-201ENST00000550076 130 ntBASIC2.8□□□□□ -1.96
LIG3P49916 MIR3605-201ENST00000583214 100 ntBASIC2.8□□□□□ -1.96
LIG3P49916 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
LIG3P49916 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC2.8□□□□□ -1.96
LIG3P49916 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC2.8□□□□□ -1.96
LIG3P49916 RNU6-1292P-201ENST00000383856 107 ntBASIC2.79□□□□□ -1.96
LIG3P49916 Y_RNA.510-201ENST00000384511 114 ntBASIC2.79□□□□□ -1.96
LIG3P49916 AL603914.1-201ENST00000401964 204 ntBASIC2.79□□□□□ -1.96
LIG3P49916 Y_RNA.690-201ENST00000516603 95 ntBASIC2.79□□□□□ -1.96
LIG3P49916 RPL12P50-201ENST00000603116 116 ntBASIC2.79□□□□□ -1.96
LIG3P49916 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC2.79□□□□□ -1.96
LIG3P49916 AL049779.4-201ENST00000604500 156 ntBASIC2.79□□□□□ -1.96
LIG3P49916 SNORA28-201ENST00000606769 126 ntBASIC2.79□□□□□ -1.96
LIG3P49916 MIR8054-201ENST00000620877 86 ntBASIC2.79□□□□□ -1.96
LIG3P49916 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC2.79□□□□□ -1.96
LIG3P49916 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
LIG3P49916 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC2.78□□□□□ -1.96
LIG3P49916 RNU1-112P-201ENST00000364401 164 ntBASIC2.78□□□□□ -1.96
LIG3P49916 Y_RNA.294-201ENST00000364916 102 ntBASIC2.78□□□□□ -1.96
LIG3P49916 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC2.78□□□□□ -1.96
LIG3P49916 RNU6-440P-201ENST00000390882 105 ntBASIC2.78□□□□□ -1.96
LIG3P49916 MIR891A-201ENST00000401237 79 ntBASIC2.78□□□□□ -1.96
LIG3P49916 MTATP6P21-201ENST00000440681 189 ntBASIC2.78□□□□□ -1.96
LIG3P49916 STAG3L5P-204ENST00000443759 179 ntBASIC2.78□□□□□ -1.96
LIG3P49916 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC2.78□□□□□ -1.96
LIG3P49916 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
LIG3P49916 MIR518A2-201ENST00000384966 87 ntBASIC2.77□□□□□ -1.97
LIG3P49916 AL138827.1-201ENST00000402666 306 ntBASIC2.77□□□□□ -1.97
LIG3P49916 MIR1283-2-201ENST00000408621 87 ntBASIC2.77□□□□□ -1.97
LIG3P49916 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC2.77□□□□□ -1.97
LIG3P49916 RNU7-107P-201ENST00000459121 61 ntBASIC2.77□□□□□ -1.97
LIG3P49916 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC2.77□□□□□ -1.97
LIG3P49916 SNORA31.11-201ENST00000516528 139 ntBASIC2.77□□□□□ -1.97
LIG3P49916 RNU2-60P-201ENST00000517290 128 ntBASIC2.77□□□□□ -1.97
LIG3P49916 ZNF861P-201ENST00000588126 639 ntBASIC2.77□□□□□ -1.97
LIG3P49916 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
LIG3P49916 AL136360.1-201ENST00000503377 1900 ntBASIC2.77□□□□□ -1.97
LIG3P49916 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
LIG3P49916 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC2.76□□□□□ -1.97
LIG3P49916 RNU6-235P-201ENST00000362644 107 ntBASIC2.76□□□□□ -1.97
LIG3P49916 Y_RNA.336-201ENST00000365307 109 ntBASIC2.76□□□□□ -1.97
LIG3P49916 RNU1-138P-201ENST00000384093 164 ntBASIC2.76□□□□□ -1.97
LIG3P49916 RNU6-950P-201ENST00000384651 107 ntBASIC2.76□□□□□ -1.97
LIG3P49916 MIR548A2-201ENST00000384956 97 ntBASIC2.76□□□□□ -1.97
LIG3P49916 HMGN2P3-201ENST00000433603 273 ntBASIC2.76□□□□□ -1.97
LIG3P49916 HMGN2P5-201ENST00000436882 273 ntBASIC2.76□□□□□ -1.97
LIG3P49916 HMGN2P32-201ENST00000444648 269 ntBASIC2.76□□□□□ -1.97
LIG3P49916 SNORD45.4-201ENST00000516629 73 ntBASIC2.76□□□□□ -1.97
LIG3P49916 MIR4319-201ENST00000577285 85 ntBASIC2.76□□□□□ -1.97
LIG3P49916 MIR3121-201ENST00000579680 77 ntBASIC2.76□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 106.2 ms