Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 AC027279.3-201ENST00000625055 122 ntBASIC1.29□□□□□ -2.2
LHX1P48742 RNU4-90P-201ENST00000362773 141 ntBASIC1.28□□□□□ -2.2
LHX1P48742 RNU6-833P-201ENST00000363486 107 ntBASIC1.28□□□□□ -2.2
LHX1P48742 Y_RNA.222-201ENST00000364264 102 ntBASIC1.28□□□□□ -2.2
LHX1P48742 U8.5-201ENST00000364528 136 ntBASIC1.28□□□□□ -2.2
LHX1P48742 MIR653-201ENST00000385279 96 ntBASIC1.28□□□□□ -2.2
LHX1P48742 RNU6ATAC19P-201ENST00000408096 110 ntBASIC1.28□□□□□ -2.2
LHX1P48742 MLLT10P1-201ENST00000418346 262 ntBASIC1.28□□□□□ -2.2
LHX1P48742 AC131281.1-201ENST00000522984 164 ntBASIC1.28□□□□□ -2.2
LHX1P48742 MIR4680-201ENST00000580906 66 ntBASIC1.28□□□□□ -2.2
LHX1P48742 AL355297.3-201ENST00000604082 446 ntBASIC1.28□□□□□ -2.2
LHX1P48742 AP003357.1-201ENST00000604497 148 ntBASIC1.28□□□□□ -2.2
LHX1P48742 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.27□□□□□ -2.21
LHX1P48742 SNORA2.2-201ENST00000365473 135 ntBASIC1.27□□□□□ -2.21
LHX1P48742 RNU6-102P-201ENST00000384485 104 ntBASIC1.27□□□□□ -2.21
LHX1P48742 AL451046.2-201ENST00000403074 277 ntBASIC1.27□□□□□ -2.21
LHX1P48742 AC104332.1-201ENST00000440471 797 ntBASIC1.27□□□□□ -2.21
LHX1P48742 HSPE1P25-201ENST00000455484 251 ntBASIC1.27□□□□□ -2.21
LHX1P48742 AC117454.1-201ENST00000491120 168 ntBASIC1.27□□□□□ -2.21
LHX1P48742 HMGN1P7-201ENST00000491722 313 ntBASIC1.27□□□□□ -2.21
LHX1P48742 AC114811.1-201ENST00000507207 168 ntBASIC1.27□□□□□ -2.21
LHX1P48742 RNU6-496P-201ENST00000516145 99 ntBASIC1.27□□□□□ -2.21
LHX1P48742 RNU6-917P-201ENST00000516294 104 ntBASIC1.27□□□□□ -2.21
LHX1P48742 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC1.27□□□□□ -2.21
LHX1P48742 AC024405.2-202ENST00000532731 184 ntBASIC1.27□□□□□ -2.21
LHX1P48742 AC113195.1-201ENST00000579952 141 ntBASIC1.27□□□□□ -2.21
LHX1P48742 MIR4762-201ENST00000585261 75 ntBASIC1.27□□□□□ -2.21
LHX1P48742 MIR548AY-201ENST00000617669 107 ntBASIC1.27□□□□□ -2.21
LHX1P48742 MIR8065-201ENST00000620577 100 ntBASIC1.27□□□□□ -2.21
LHX1P48742 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.27□□□□□ -2.21
LHX1P48742 Y_RNA.152-201ENST00000363578 100 ntBASIC1.26□□□□□ -2.21
LHX1P48742 Y_RNA.164-201ENST00000363709 102 ntBASIC1.26□□□□□ -2.21
LHX1P48742 RNU6-53P-201ENST00000365367 106 ntBASIC1.26□□□□□ -2.21
LHX1P48742 SNORD26-201ENST00000384147 75 ntBASIC1.26□□□□□ -2.21
LHX1P48742 Y_RNA.569-201ENST00000384749 103 ntBASIC1.26□□□□□ -2.21
LHX1P48742 MIR522-201ENST00000385071 87 ntBASIC1.26□□□□□ -2.21
LHX1P48742 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC1.26□□□□□ -2.21
LHX1P48742 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC1.26□□□□□ -2.21
LHX1P48742 AC005534.2-201ENST00000431047 433 ntBASIC1.26□□□□□ -2.21
LHX1P48742 MTCYBP6-201ENST00000441810 138 ntBASIC1.26□□□□□ -2.21
LHX1P48742 DYNLT3P2-201ENST00000442517 295 ntBASIC1.26□□□□□ -2.21
LHX1P48742 RPS29P23-201ENST00000458635 123 ntBASIC1.26□□□□□ -2.21
LHX1P48742 RPL23AP54-201ENST00000495129 419 ntBASIC1.26□□□□□ -2.21
LHX1P48742 RNY3P15-201ENST00000516297 97 ntBASIC1.26□□□□□ -2.21
LHX1P48742 RNU7-115P-201ENST00000516433 55 ntBASIC1.26□□□□□ -2.21
LHX1P48742 AC136628.3-201ENST00000521868 290 ntBASIC1.26□□□□□ -2.21
LHX1P48742 AC008269.2-201ENST00000561915 1105 ntBASIC1.26□□□□□ -2.21
LHX1P48742 GHRLOS.1-201ENST00000610995 70 ntBASIC1.26□□□□□ -2.21
LHX1P48742 AC091895.1-201ENST00000624494 256 ntBASIC1.26□□□□□ -2.21
LHX1P48742 RNU6-1084P-201ENST00000362498 107 ntBASIC1.25□□□□□ -2.21
LHX1P48742 Y_RNA.105-201ENST00000363182 111 ntBASIC1.25□□□□□ -2.21
LHX1P48742 Y_RNA.210-201ENST00000364161 110 ntBASIC1.25□□□□□ -2.21
LHX1P48742 U8.7-201ENST00000364940 136 ntBASIC1.25□□□□□ -2.21
LHX1P48742 SNORA33.2-201ENST00000365413 134 ntBASIC1.25□□□□□ -2.21
LHX1P48742 Y_RNA.418-201ENST00000384029 102 ntBASIC1.25□□□□□ -2.21
LHX1P48742 RNU6-131P-201ENST00000391144 107 ntBASIC1.25□□□□□ -2.21
LHX1P48742 RNU6-121P-201ENST00000410525 99 ntBASIC1.25□□□□□ -2.21
LHX1P48742 ELOCP20-201ENST00000422460 345 ntBASIC1.25□□□□□ -2.21
LHX1P48742 SNRPGP10-201ENST00000432323 225 ntBASIC1.25□□□□□ -2.21
LHX1P48742 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC1.25□□□□□ -2.21
LHX1P48742 RNU6-1153P-201ENST00000516760 105 ntBASIC1.25□□□□□ -2.21
LHX1P48742 Y_RNA.714-201ENST00000517065 90 ntBASIC1.25□□□□□ -2.21
LHX1P48742 AC127455.1-201ENST00000565496 145 ntBASIC1.25□□□□□ -2.21
LHX1P48742 NAA50-211ENST00000630058 177 ntTSL 5 BASIC1.25□□□□□ -2.21
LHX1P48742 Y_RNA.19-201ENST00000362462 99 ntBASIC1.24□□□□□ -2.21
LHX1P48742 Y_RNA.136-201ENST00000363444 102 ntBASIC1.24□□□□□ -2.21
LHX1P48742 RNU6-770P-201ENST00000363929 105 ntBASIC1.24□□□□□ -2.21
LHX1P48742 Y_RNA.214-201ENST00000364201 112 ntBASIC1.24□□□□□ -2.21
LHX1P48742 Y_RNA.276-201ENST00000364732 109 ntBASIC1.24□□□□□ -2.21
LHX1P48742 RNU6-1227P-201ENST00000383981 107 ntBASIC1.24□□□□□ -2.21
LHX1P48742 RNU6-639P-201ENST00000384074 107 ntBASIC1.24□□□□□ -2.21
LHX1P48742 SNORD41-201ENST00000386967 70 ntBASIC1.24□□□□□ -2.21
LHX1P48742 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.24□□□□□ -2.21
LHX1P48742 Y_RNA.581-201ENST00000391017 97 ntBASIC1.24□□□□□ -2.21
LHX1P48742 AC015922.2-201ENST00000435593 184 ntBASIC1.24□□□□□ -2.21
LHX1P48742 LINC01399-202ENST00000458450 244 ntBASIC1.24□□□□□ -2.21
LHX1P48742 RNU6-191P-201ENST00000516295 94 ntBASIC1.24□□□□□ -2.21
LHX1P48742 RNU6-764P-201ENST00000516396 105 ntBASIC1.24□□□□□ -2.21
LHX1P48742 RNU6-165P-201ENST00000517170 99 ntBASIC1.24□□□□□ -2.21
LHX1P48742 FAM106DP-201ENST00000586416 501 ntBASIC1.24□□□□□ -2.21
LHX1P48742 JPX_2.1-201ENST00000614161 69 ntBASIC1.24□□□□□ -2.21
LHX1P48742 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.24□□□□□ -2.21
LHX1P48742 MIR26B-201ENST00000362251 77 ntBASIC1.23□□□□□ -2.21
LHX1P48742 RNU6-1048P-201ENST00000364054 107 ntBASIC1.23□□□□□ -2.21
LHX1P48742 Y_RNA.203-201ENST00000364106 102 ntBASIC1.23□□□□□ -2.21
LHX1P48742 snoU2-30.1-201ENST00000365012 70 ntBASIC1.23□□□□□ -2.21
LHX1P48742 RNU6-290P-201ENST00000365212 101 ntBASIC1.23□□□□□ -2.21
LHX1P48742 SNORA72.4-201ENST00000384174 132 ntBASIC1.23□□□□□ -2.21
LHX1P48742 MIR526A1-201ENST00000384897 85 ntBASIC1.23□□□□□ -2.21
LHX1P48742 MIR452-201ENST00000385020 85 ntBASIC1.23□□□□□ -2.21
LHX1P48742 RNU7-141P-201ENST00000459304 62 ntBASIC1.23□□□□□ -2.21
LHX1P48742 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.23□□□□□ -2.21
LHX1P48742 RNU6-1143P-201ENST00000516125 104 ntBASIC1.23□□□□□ -2.21
LHX1P48742 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC1.23□□□□□ -2.21
LHX1P48742 AL357312.1-201ENST00000603879 298 ntBASIC1.23□□□□□ -2.21
LHX1P48742 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.23□□□□□ -2.21
LHX1P48742 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.23□□□□□ -2.21
LHX1P48742 RNU6-801P-201ENST00000364087 105 ntBASIC1.22□□□□□ -2.21
LHX1P48742 RNU6-985P-201ENST00000410182 104 ntBASIC1.22□□□□□ -2.21
LHX1P48742 RNU2-14P-201ENST00000411053 191 ntBASIC1.22□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 116.4 ms