Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 MIR1298-201ENST00000408783 112 ntBASIC0.66□□□□□ -2.3
CXCL12P48061 MLLT10P1-201ENST00000418346 262 ntBASIC0.66□□□□□ -2.3
CXCL12P48061 RNU6-496P-201ENST00000516145 99 ntBASIC0.66□□□□□ -2.3
CXCL12P48061 RNU6-699P-201ENST00000517081 110 ntBASIC0.66□□□□□ -2.3
CXCL12P48061 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC0.66□□□□□ -2.3
CXCL12P48061 PRELID3BP2-201ENST00000605362 201 ntBASIC0.66□□□□□ -2.3
CXCL12P48061 MIR8087-201ENST00000612745 78 ntBASIC0.66□□□□□ -2.3
CXCL12P48061 AL109933.3-201ENST00000619095 188 ntBASIC0.66□□□□□ -2.3
CXCL12P48061 AC243829.3-201ENST00000622177 108 ntBASIC0.66□□□□□ -2.3
CXCL12P48061 U6.92-201ENST00000636464 89 ntBASIC0.66□□□□□ -2.3
CXCL12P48061 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.66□□□□□ -2.3
CXCL12P48061 RNU6-490P-201ENST00000362985 107 ntBASIC0.65□□□□□ -2.31
CXCL12P48061 U8.5-201ENST00000364528 136 ntBASIC0.65□□□□□ -2.31
CXCL12P48061 MIR516B2-201ENST00000385190 85 ntBASIC0.65□□□□□ -2.31
CXCL12P48061 MIR628-201ENST00000385229 95 ntBASIC0.65□□□□□ -2.31
CXCL12P48061 RBMX2P4-201ENST00000441256 376 ntBASIC0.65□□□□□ -2.31
CXCL12P48061 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.65□□□□□ -2.31
CXCL12P48061 RPS20P10-201ENST00000451209 253 ntBASIC0.65□□□□□ -2.31
CXCL12P48061 RNU7-21P-201ENST00000459430 62 ntBASIC0.65□□□□□ -2.31
CXCL12P48061 RNU6-277P-201ENST00000516272 106 ntBASIC0.65□□□□□ -2.31
CXCL12P48061 MIR4762-201ENST00000585261 75 ntBASIC0.65□□□□□ -2.31
CXCL12P48061 AL391903.3-201ENST00000612158 163 ntBASIC0.65□□□□□ -2.31
CXCL12P48061 AC106800.4-201ENST00000614905 153 ntBASIC0.65□□□□□ -2.31
CXCL12P48061 AC099654.14-201ENST00000638599 341 ntBASIC0.65□□□□□ -2.31
CXCL12P48061 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC0.64□□□□□ -2.31
CXCL12P48061 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.64□□□□□ -2.31
CXCL12P48061 MIR330-201ENST00000362196 94 ntBASIC0.64□□□□□ -2.31
CXCL12P48061 Y_RNA.142-201ENST00000363491 102 ntBASIC0.64□□□□□ -2.31
CXCL12P48061 Y_RNA.146-201ENST00000363549 102 ntBASIC0.64□□□□□ -2.31
CXCL12P48061 Y_RNA.253-201ENST00000364562 112 ntBASIC0.64□□□□□ -2.31
CXCL12P48061 Y_RNA.259-201ENST00000364619 101 ntBASIC0.64□□□□□ -2.31
CXCL12P48061 RNU1-36P-201ENST00000365130 165 ntBASIC0.64□□□□□ -2.31
CXCL12P48061 Y_RNA.329-201ENST00000365209 107 ntBASIC0.64□□□□□ -2.31
CXCL12P48061 MIR452-201ENST00000385020 85 ntBASIC0.64□□□□□ -2.31
CXCL12P48061 MIR522-201ENST00000385071 87 ntBASIC0.64□□□□□ -2.31
CXCL12P48061 RNU2-64P-201ENST00000411315 191 ntBASIC0.64□□□□□ -2.31
CXCL12P48061 AC092628.1-201ENST00000436250 252 ntBASIC0.64□□□□□ -2.31
CXCL12P48061 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC0.64□□□□□ -2.31
CXCL12P48061 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC0.64□□□□□ -2.31
CXCL12P48061 AC245047.8-201ENST00000456455 284 ntBASIC0.64□□□□□ -2.31
CXCL12P48061 Y_RNA.681-201ENST00000516445 113 ntBASIC0.64□□□□□ -2.31
CXCL12P48061 MIR4653-201ENST00000585107 83 ntBASIC0.64□□□□□ -2.31
CXCL12P48061 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC0.64□□□□□ -2.31
CXCL12P48061 AC091925.1-201ENST00000623204 462 ntBASIC0.64□□□□□ -2.31
CXCL12P48061 SNORD114-24-201ENST00000365029 72 ntBASIC0.63□□□□□ -2.31
CXCL12P48061 Y_RNA.387-201ENST00000383918 102 ntBASIC0.63□□□□□ -2.31
CXCL12P48061 RNY4P36-201ENST00000391116 96 ntBASIC0.63□□□□□ -2.31
CXCL12P48061 AL390729.2-201ENST00000416137 156 ntBASIC0.63□□□□□ -2.31
CXCL12P48061 AC098934.3-201ENST00000430450 190 ntBASIC0.63□□□□□ -2.31
CXCL12P48061 AC099799.1-201ENST00000439809 192 ntBASIC0.63□□□□□ -2.31
CXCL12P48061 ACA64.5-201ENST00000516207 127 ntBASIC0.63□□□□□ -2.31
CXCL12P48061 SNORD45.4-201ENST00000516629 73 ntBASIC0.63□□□□□ -2.31
CXCL12P48061 Y_RNA.718-201ENST00000517110 102 ntBASIC0.63□□□□□ -2.31
CXCL12P48061 AC005972.2-201ENST00000604690 348 ntBASIC0.63□□□□□ -2.31
CXCL12P48061 AC022441.3-201ENST00000605737 136 ntBASIC0.63□□□□□ -2.31
CXCL12P48061 AC025253.1-201ENST00000613623 543 ntBASIC0.63□□□□□ -2.31
CXCL12P48061 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC0.63□□□□□ -2.31
CXCL12P48061 AC133104.2-201ENST00000615272 193 ntBASIC0.63□□□□□ -2.31
CXCL12P48061 MIR5087-201ENST00000635826 76 ntBASIC0.63□□□□□ -2.31
CXCL12P48061 HSBP1P2-201ENST00000299671 229 ntBASIC0.62□□□□□ -2.31
CXCL12P48061 Y_RNA.27-201ENST00000362540 103 ntBASIC0.62□□□□□ -2.31
CXCL12P48061 Y_RNA.68-201ENST00000362881 102 ntBASIC0.62□□□□□ -2.31
CXCL12P48061 SNORA25.3-201ENST00000363205 127 ntBASIC0.62□□□□□ -2.31
CXCL12P48061 Y_RNA.178-201ENST00000363832 102 ntBASIC0.62□□□□□ -2.31
CXCL12P48061 Y_RNA.230-201ENST00000364348 109 ntBASIC0.62□□□□□ -2.31
CXCL12P48061 RNU6-1175P-201ENST00000365200 107 ntBASIC0.62□□□□□ -2.31
CXCL12P48061 RNU6-1283P-201ENST00000365314 105 ntBASIC0.62□□□□□ -2.31
CXCL12P48061 RNU6-1040P-201ENST00000383974 107 ntBASIC0.62□□□□□ -2.31
CXCL12P48061 MCFD2P1-201ENST00000417812 300 ntBASIC0.62□□□□□ -2.31
CXCL12P48061 AL606490.4-201ENST00000423117 127 ntBASIC0.62□□□□□ -2.31
CXCL12P48061 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC0.62□□□□□ -2.31
CXCL12P48061 PDCD5P2-201ENST00000507570 312 ntBASIC0.62□□□□□ -2.31
CXCL12P48061 RNU7-41P-201ENST00000515917 61 ntBASIC0.62□□□□□ -2.31
CXCL12P48061 RNU6-911P-201ENST00000516523 104 ntBASIC0.62□□□□□ -2.31
CXCL12P48061 RN7SKP295-201ENST00000517264 153 ntBASIC0.62□□□□□ -2.31
CXCL12P48061 AC090142.3-201ENST00000519012 385 ntBASIC0.62□□□□□ -2.31
CXCL12P48061 AC022616.4-201ENST00000522985 181 ntBASIC0.62□□□□□ -2.31
CXCL12P48061 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC0.62□□□□□ -2.31
CXCL12P48061 AC006600.1-201ENST00000572529 153 ntBASIC0.62□□□□□ -2.31
CXCL12P48061 VN1R91P-201ENST00000594377 169 ntBASIC0.62□□□□□ -2.31
CXCL12P48061 AC084781.2-201ENST00000615568 161 ntBASIC0.62□□□□□ -2.31
CXCL12P48061 NAA50-211ENST00000630058 177 ntTSL 5 BASIC0.62□□□□□ -2.31
CXCL12P48061 MIR1302-1-201ENST00000637932 143 ntBASIC0.62□□□□□ -2.31
CXCL12P48061 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC0.62□□□□□ -2.31
CXCL12P48061 RNU6-1084P-201ENST00000362498 107 ntBASIC0.61□□□□□ -2.31
CXCL12P48061 RNA5SP264-201ENST00000363115 107 ntBASIC0.61□□□□□ -2.31
CXCL12P48061 SNORD50B-201ENST00000364995 70 ntBASIC0.61□□□□□ -2.31
CXCL12P48061 RNU6-716P-201ENST00000365621 103 ntBASIC0.61□□□□□ -2.31
CXCL12P48061 Y_RNA.463-201ENST00000384271 102 ntBASIC0.61□□□□□ -2.31
CXCL12P48061 SNORA72-201ENST00000384339 132 ntBASIC0.61□□□□□ -2.31
CXCL12P48061 Y_RNA.570-201ENST00000384750 101 ntBASIC0.61□□□□□ -2.31
CXCL12P48061 MIR200A-201ENST00000384875 90 ntBASIC0.61□□□□□ -2.31
CXCL12P48061 MIR942-201ENST00000401111 86 ntBASIC0.61□□□□□ -2.31
CXCL12P48061 RNU6-855P-201ENST00000410395 104 ntBASIC0.61□□□□□ -2.31
CXCL12P48061 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC0.61□□□□□ -2.31
CXCL12P48061 RNU7-90P-201ENST00000459216 62 ntBASIC0.61□□□□□ -2.31
CXCL12P48061 SNORA18.7-201ENST00000516910 131 ntBASIC0.61□□□□□ -2.31
CXCL12P48061 SNORA74.3-201ENST00000517108 154 ntBASIC0.61□□□□□ -2.31
CXCL12P48061 AL132765.2-201ENST00000610812 351 ntBASIC0.61□□□□□ -2.31
CXCL12P48061 MIR4272-201ENST00000635924 64 ntBASIC0.61□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 125.8 ms