Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 RNU4-80P-201ENST00000363200 141 ntBASIC1.13□□□□□ -2.23
CDX1P47902 SNORA25-201ENST00000384384 134 ntBASIC1.13□□□□□ -2.23
CDX1P47902 MIR1323-201ENST00000408090 73 ntBASIC1.13□□□□□ -2.23
CDX1P47902 MIR1252-201ENST00000408861 65 ntBASIC1.13□□□□□ -2.23
CDX1P47902 AL354695.1-201ENST00000427935 228 ntBASIC1.13□□□□□ -2.23
CDX1P47902 AC048334.1-201ENST00000477975 159 ntBASIC1.13□□□□□ -2.23
CDX1P47902 SNORA31.4-201ENST00000516049 129 ntBASIC1.13□□□□□ -2.23
CDX1P47902 RNU7-115P-201ENST00000516433 55 ntBASIC1.13□□□□□ -2.23
CDX1P47902 RNU6-897P-201ENST00000517135 105 ntBASIC1.13□□□□□ -2.23
CDX1P47902 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC1.13□□□□□ -2.23
CDX1P47902 BX284668.6-201ENST00000606899 438 ntBASIC1.13□□□□□ -2.23
CDX1P47902 JPX_2.1-201ENST00000614161 69 ntBASIC1.13□□□□□ -2.23
CDX1P47902 NAA50-211ENST00000630058 177 ntTSL 5 BASIC1.13□□□□□ -2.23
CDX1P47902 RNU6-797P-201ENST00000363101 109 ntBASIC1.12□□□□□ -2.23
CDX1P47902 Y_RNA.203-201ENST00000364106 102 ntBASIC1.12□□□□□ -2.23
CDX1P47902 Y_RNA.394-201ENST00000383942 103 ntBASIC1.12□□□□□ -2.23
CDX1P47902 RNU6-939P-201ENST00000384634 107 ntBASIC1.12□□□□□ -2.23
CDX1P47902 MIR516B2-201ENST00000385190 85 ntBASIC1.12□□□□□ -2.23
CDX1P47902 MIR618-201ENST00000385287 98 ntBASIC1.12□□□□□ -2.23
CDX1P47902 AC092473.1-201ENST00000441098 221 ntBASIC1.12□□□□□ -2.23
CDX1P47902 SNRPGP13-201ENST00000442212 177 ntBASIC1.12□□□□□ -2.23
CDX1P47902 RN7SKP179-201ENST00000516126 217 ntBASIC1.12□□□□□ -2.23
CDX1P47902 SNORA40.15-201ENST00000516884 107 ntBASIC1.12□□□□□ -2.23
CDX1P47902 RNU1-92P-201ENST00000517017 135 ntBASIC1.12□□□□□ -2.23
CDX1P47902 AC136628.3-201ENST00000521868 290 ntBASIC1.12□□□□□ -2.23
CDX1P47902 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC1.12□□□□□ -2.23
CDX1P47902 MIR4300-201ENST00000581016 96 ntBASIC1.12□□□□□ -2.23
CDX1P47902 AL022345.2-201ENST00000606307 135 ntBASIC1.12□□□□□ -2.23
CDX1P47902 MIR548AY-201ENST00000617669 107 ntBASIC1.12□□□□□ -2.23
CDX1P47902 Y_RNA.138-201ENST00000363462 102 ntBASIC1.11□□□□□ -2.23
CDX1P47902 SNORA7.1-201ENST00000363750 139 ntBASIC1.11□□□□□ -2.23
CDX1P47902 SNORD50B-201ENST00000364995 70 ntBASIC1.11□□□□□ -2.23
CDX1P47902 Y_RNA.336-201ENST00000365307 109 ntBASIC1.11□□□□□ -2.23
CDX1P47902 SNORA22B-201ENST00000383876 138 ntBASIC1.11□□□□□ -2.23
CDX1P47902 MIR136-201ENST00000385207 82 ntBASIC1.11□□□□□ -2.23
CDX1P47902 RNU6-910P-201ENST00000390844 107 ntBASIC1.11□□□□□ -2.23
CDX1P47902 MIR548P-201ENST00000408336 84 ntBASIC1.11□□□□□ -2.23
CDX1P47902 RNU6-1054P-201ENST00000411293 104 ntBASIC1.11□□□□□ -2.23
CDX1P47902 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.11□□□□□ -2.23
CDX1P47902 HMGN2P32-201ENST00000444648 269 ntBASIC1.11□□□□□ -2.23
CDX1P47902 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC1.11□□□□□ -2.23
CDX1P47902 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1.11□□□□□ -2.23
CDX1P47902 RAC1P9-201ENST00000604990 392 ntBASIC1.11□□□□□ -2.23
CDX1P47902 RNU4-90P-201ENST00000362773 141 ntBASIC1.1□□□□□ -2.23
CDX1P47902 Y_RNA.380-201ENST00000365663 111 ntBASIC1.1□□□□□ -2.23
CDX1P47902 Y_RNA.569-201ENST00000384749 103 ntBASIC1.1□□□□□ -2.23
CDX1P47902 MIR758-201ENST00000390227 88 ntBASIC1.1□□□□□ -2.23
CDX1P47902 SNORD115-46-201ENST00000390982 71 ntBASIC1.1□□□□□ -2.23
CDX1P47902 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.1□□□□□ -2.23
CDX1P47902 AC245047.7-201ENST00000440265 293 ntBASIC1.1□□□□□ -2.23
CDX1P47902 RNU6-1053P-201ENST00000515930 101 ntBASIC1.1□□□□□ -2.23
CDX1P47902 AC127455.1-201ENST00000565496 145 ntBASIC1.1□□□□□ -2.23
CDX1P47902 MIR4421-201ENST00000578133 69 ntBASIC1.1□□□□□ -2.23
CDX1P47902 AC007742.2-201ENST00000618226 398 ntBASIC1.1□□□□□ -2.23
CDX1P47902 SNORD14E-201ENST00000364009 85 ntBASIC1.09□□□□□ -2.23
CDX1P47902 RNU6-1048P-201ENST00000364054 107 ntBASIC1.09□□□□□ -2.23
CDX1P47902 AC117470.1-201ENST00000381974 330 ntBASIC1.09□□□□□ -2.23
CDX1P47902 MIR802-201ENST00000390235 94 ntBASIC1.09□□□□□ -2.23
CDX1P47902 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC1.09□□□□□ -2.23
CDX1P47902 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.09□□□□□ -2.23
CDX1P47902 SNORA36B-201ENST00000410438 131 ntBASIC1.09□□□□□ -2.23
CDX1P47902 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC1.09□□□□□ -2.23
CDX1P47902 RNU7-141P-201ENST00000459304 62 ntBASIC1.09□□□□□ -2.23
CDX1P47902 SNORD111.1-201ENST00000516421 86 ntBASIC1.09□□□□□ -2.23
CDX1P47902 MIR2681-201ENST00000581814 105 ntBASIC1.09□□□□□ -2.23
CDX1P47902 MIR3171-201ENST00000584270 74 ntBASIC1.09□□□□□ -2.23
CDX1P47902 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.09□□□□□ -2.23
CDX1P47902 Y_RNA.222-201ENST00000364264 102 ntBASIC1.08□□□□□ -2.24
CDX1P47902 RNU6-496P-201ENST00000516145 99 ntBASIC1.08□□□□□ -2.24
CDX1P47902 RNU6-191P-201ENST00000516295 94 ntBASIC1.08□□□□□ -2.24
CDX1P47902 RNY3P15-201ENST00000516297 97 ntBASIC1.08□□□□□ -2.24
CDX1P47902 Y_RNA.711-201ENST00000516993 102 ntBASIC1.08□□□□□ -2.24
CDX1P47902 RNA5SP404-201ENST00000517118 132 ntBASIC1.08□□□□□ -2.24
CDX1P47902 AC090142.3-201ENST00000519012 385 ntBASIC1.08□□□□□ -2.24
CDX1P47902 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC1.08□□□□□ -2.24
CDX1P47902 AL359821.1-201ENST00000605519 182 ntBASIC1.08□□□□□ -2.24
CDX1P47902 AC134026.1-201ENST00000623249 2239 ntBASIC1.07□□□□□ -2.24
CDX1P47902 AL391987.6-201ENST00000305671 199 ntBASIC1.07□□□□□ -2.24
CDX1P47902 Y_RNA.158-201ENST00000363651 101 ntBASIC1.07□□□□□ -2.24
CDX1P47902 RNU6-1209P-201ENST00000363655 107 ntBASIC1.07□□□□□ -2.24
CDX1P47902 RNU6-801P-201ENST00000364087 105 ntBASIC1.07□□□□□ -2.24
CDX1P47902 SNORA72.4-201ENST00000384174 132 ntBASIC1.07□□□□□ -2.24
CDX1P47902 Y_RNA.455-201ENST00000384230 98 ntBASIC1.07□□□□□ -2.24
CDX1P47902 RNU6-102P-201ENST00000384485 104 ntBASIC1.07□□□□□ -2.24
CDX1P47902 Y_RNA.527-201ENST00000384573 102 ntBASIC1.07□□□□□ -2.24
CDX1P47902 MIR15B-201ENST00000385045 98 ntBASIC1.07□□□□□ -2.24
CDX1P47902 MTCO2P33-201ENST00000402100 465 ntBASIC1.07□□□□□ -2.24
CDX1P47902 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.07□□□□□ -2.24
CDX1P47902 RNU2-14P-201ENST00000411053 191 ntBASIC1.07□□□□□ -2.24
CDX1P47902 HSPE1P25-201ENST00000455484 251 ntBASIC1.07□□□□□ -2.24
CDX1P47902 RNU6-437P-201ENST00000459408 95 ntBASIC1.07□□□□□ -2.24
CDX1P47902 SNORA18.7-201ENST00000516910 131 ntBASIC1.07□□□□□ -2.24
CDX1P47902 AC068338.1-201ENST00000565567 176 ntBASIC1.07□□□□□ -2.24
CDX1P47902 AL512605.2-201ENST00000592972 256 ntBASIC1.07□□□□□ -2.24
CDX1P47902 AC027335.2-201ENST00000624030 375 ntBASIC1.07□□□□□ -2.24
CDX1P47902 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.07□□□□□ -2.24
CDX1P47902 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.06□□□□□ -2.24
CDX1P47902 Y_RNA.152-201ENST00000363578 100 ntBASIC1.06□□□□□ -2.24
CDX1P47902 RNU6-770P-201ENST00000363929 105 ntBASIC1.06□□□□□ -2.24
CDX1P47902 Y_RNA.202-201ENST00000364083 110 ntBASIC1.06□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 1098.1 ms