Protein–RNA interactions for Protein: P31275

HOXC12, Homeobox protein Hox-C12, humanhuman

Predictions only

Length 282 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC12P31275 RNU6-440P-201ENST00000390882 105 ntBASIC2.54□□□□□ -2
HOXC12P31275 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC2.54□□□□□ -2
HOXC12P31275 RNU6-504P-201ENST00000516568 104 ntBASIC2.54□□□□□ -2
HOXC12P31275 MIR548AI-201ENST00000579940 88 ntBASIC2.54□□□□□ -2
HOXC12P31275 AC087685.1-201ENST00000587507 141 ntBASIC2.54□□□□□ -2
HOXC12P31275 MIR8054-201ENST00000620877 86 ntBASIC2.54□□□□□ -2
HOXC12P31275 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC2.54□□□□□ -2
HOXC12P31275 ICE2P2-201ENST00000483823 2787 ntBASIC2.54□□□□□ -2
HOXC12P31275 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.53□□□□□ -2
HOXC12P31275 SNORD50B-201ENST00000364995 70 ntBASIC2.53□□□□□ -2
HOXC12P31275 Y_RNA.584-201ENST00000391090 114 ntBASIC2.53□□□□□ -2
HOXC12P31275 RNA5SP465-201ENST00000391195 109 ntBASIC2.53□□□□□ -2
HOXC12P31275 RNA5SP482-201ENST00000391269 118 ntBASIC2.53□□□□□ -2
HOXC12P31275 RNU6-1211P-201ENST00000459179 105 ntBASIC2.53□□□□□ -2
HOXC12P31275 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC2.53□□□□□ -2
HOXC12P31275 RNVU1-2-201ENST00000516326 135 ntBASIC2.53□□□□□ -2
HOXC12P31275 SNORD14A-201ENST00000606526 91 ntBASIC2.53□□□□□ -2
HOXC12P31275 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC2.53□□□□□ -2
HOXC12P31275 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
HOXC12P31275 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.52□□□□□ -2.01
HOXC12P31275 Y_RNA.242-201ENST00000364473 110 ntBASIC2.52□□□□□ -2.01
HOXC12P31275 Y_RNA.251-201ENST00000364551 99 ntBASIC2.52□□□□□ -2.01
HOXC12P31275 SNORA6-201ENST00000384033 151 ntBASIC2.52□□□□□ -2.01
HOXC12P31275 MIR512-1-201ENST00000384913 84 ntBASIC2.52□□□□□ -2.01
HOXC12P31275 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC2.52□□□□□ -2.01
HOXC12P31275 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.52□□□□□ -2.01
HOXC12P31275 AC069257.2-201ENST00000441819 155 ntBASIC2.52□□□□□ -2.01
HOXC12P31275 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.52□□□□□ -2.01
HOXC12P31275 AC096725.1-201ENST00000514266 313 ntBASIC2.52□□□□□ -2.01
HOXC12P31275 Y_RNA.666-201ENST00000516187 112 ntBASIC2.52□□□□□ -2.01
HOXC12P31275 RNU6-62P-201ENST00000516526 102 ntBASIC2.52□□□□□ -2.01
HOXC12P31275 RNU7-28P-201ENST00000516759 62 ntBASIC2.52□□□□□ -2.01
HOXC12P31275 RNU6-971P-201ENST00000516920 106 ntBASIC2.52□□□□□ -2.01
HOXC12P31275 TUG1_4.1-201ENST00000619464 181 ntBASIC2.52□□□□□ -2.01
HOXC12P31275 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.52□□□□□ -2.01
HOXC12P31275 Y_RNA.66-201ENST00000362862 102 ntBASIC2.51□□□□□ -2.01
HOXC12P31275 RNU6-22P-201ENST00000384355 107 ntBASIC2.51□□□□□ -2.01
HOXC12P31275 RNU6-1081P-201ENST00000384537 107 ntBASIC2.51□□□□□ -2.01
HOXC12P31275 AC087499.2-201ENST00000432861 149 ntBASIC2.51□□□□□ -2.01
HOXC12P31275 STAG3L5P-204ENST00000443759 179 ntBASIC2.51□□□□□ -2.01
HOXC12P31275 RNU1-41P-201ENST00000516161 162 ntBASIC2.51□□□□□ -2.01
HOXC12P31275 RNU1-48P-201ENST00000516400 162 ntBASIC2.51□□□□□ -2.01
HOXC12P31275 SNORA18.4-201ENST00000516440 124 ntBASIC2.51□□□□□ -2.01
HOXC12P31275 AP001328.1-201ENST00000528550 176 ntBASIC2.51□□□□□ -2.01
HOXC12P31275 DLEU2_6.1-201ENST00000610536 112 ntBASIC2.51□□□□□ -2.01
HOXC12P31275 AC011603.4-201ENST00000611325 277 ntBASIC2.51□□□□□ -2.01
HOXC12P31275 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
HOXC12P31275 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
HOXC12P31275 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
HOXC12P31275 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
HOXC12P31275 SNORD61-201ENST00000384252 73 ntBASIC2.5□□□□□ -2.01
HOXC12P31275 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC2.5□□□□□ -2.01
HOXC12P31275 UBL5P3-201ENST00000475112 231 ntBASIC2.5□□□□□ -2.01
HOXC12P31275 RNU6-693P-201ENST00000516134 107 ntBASIC2.5□□□□□ -2.01
HOXC12P31275 RNU6-1270P-201ENST00000517128 108 ntBASIC2.5□□□□□ -2.01
HOXC12P31275 AC121758.2-201ENST00000553271 193 ntBASIC2.5□□□□□ -2.01
HOXC12P31275 MIR4762-201ENST00000585261 75 ntBASIC2.5□□□□□ -2.01
HOXC12P31275 MIR6895-201ENST00000613497 78 ntBASIC2.5□□□□□ -2.01
HOXC12P31275 AP001340.1-201ENST00000624405 217 ntBASIC2.5□□□□□ -2.01
HOXC12P31275 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC2.5□□□□□ -2.01
HOXC12P31275 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
HOXC12P31275 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.49□□□□□ -2.01
HOXC12P31275 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC2.49□□□□□ -2.01
HOXC12P31275 SNORD14E-201ENST00000364009 85 ntBASIC2.49□□□□□ -2.01
HOXC12P31275 RNU6-915P-201ENST00000364943 103 ntBASIC2.49□□□□□ -2.01
HOXC12P31275 snoU2-30.1-201ENST00000365012 70 ntBASIC2.49□□□□□ -2.01
HOXC12P31275 MIR539-201ENST00000365690 78 ntBASIC2.49□□□□□ -2.01
HOXC12P31275 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC2.49□□□□□ -2.01
HOXC12P31275 RNU2-7P-201ENST00000410794 178 ntBASIC2.49□□□□□ -2.01
HOXC12P31275 RNA5SP501-201ENST00000410990 112 ntBASIC2.49□□□□□ -2.01
HOXC12P31275 RN7SL75P-201ENST00000461926 281 ntBASIC2.49□□□□□ -2.01
HOXC12P31275 SNORA31.10-201ENST00000516482 106 ntBASIC2.49□□□□□ -2.01
HOXC12P31275 SNORD45.4-201ENST00000516629 73 ntBASIC2.49□□□□□ -2.01
HOXC12P31275 MIR3129-201ENST00000581095 76 ntBASIC2.49□□□□□ -2.01
HOXC12P31275 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC2.49□□□□□ -2.01
HOXC12P31275 SNORA28-201ENST00000606769 126 ntBASIC2.49□□□□□ -2.01
HOXC12P31275 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC2.49□□□□□ -2.01
HOXC12P31275 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC2.49□□□□□ -2.01
HOXC12P31275 AC093831.2-201ENST00000624393 3427 ntBASIC2.48□□□□□ -2.01
HOXC12P31275 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.48□□□□□ -2.01
HOXC12P31275 SNORA3A-201ENST00000364113 130 ntBASIC2.48□□□□□ -2.01
HOXC12P31275 U8.5-201ENST00000364528 136 ntBASIC2.48□□□□□ -2.01
HOXC12P31275 RNU6-442P-201ENST00000383968 104 ntBASIC2.48□□□□□ -2.01
HOXC12P31275 SNORA1-201ENST00000384107 130 ntBASIC2.48□□□□□ -2.01
HOXC12P31275 SNORA70B-201ENST00000384210 135 ntBASIC2.48□□□□□ -2.01
HOXC12P31275 MIR196B-201ENST00000384852 84 ntBASIC2.48□□□□□ -2.01
HOXC12P31275 SNORA48.1-201ENST00000390879 135 ntBASIC2.48□□□□□ -2.01
HOXC12P31275 RN7SKP200-201ENST00000410564 320 ntBASIC2.48□□□□□ -2.01
HOXC12P31275 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC2.48□□□□□ -2.01
HOXC12P31275 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.48□□□□□ -2.01
HOXC12P31275 SNORD109B-201ENST00000458961 67 ntBASIC2.48□□□□□ -2.01
HOXC12P31275 SNORD109A-201ENST00000459128 67 ntBASIC2.48□□□□□ -2.01
HOXC12P31275 AC007751.1-201ENST00000529260 376 ntBASIC2.48□□□□□ -2.01
HOXC12P31275 AC131055.1-201ENST00000584626 316 ntBASIC2.48□□□□□ -2.01
HOXC12P31275 AL590808.1-201ENST00000618696 141 ntBASIC2.48□□□□□ -2.01
HOXC12P31275 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.48□□□□□ -2.01
HOXC12P31275 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.47□□□□□ -2.01
HOXC12P31275 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC2.47□□□□□ -2.01
HOXC12P31275 MIR26A1-201ENST00000362205 77 ntBASIC2.47□□□□□ -2.01
HOXC12P31275 SNORD24-201ENST00000383884 75 ntBASIC2.47□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 188.4 ms