Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 AC006157.1-201ENST00000611750 366 ntBASIC0.9□□□□□ -2.27
HOXA9P31269 PART1_1.1-201ENST00000611761 217 ntBASIC0.9□□□□□ -2.27
HOXA9P31269 AC068647.2-201ENST00000637380 353 ntBASIC0.9□□□□□ -2.27
HOXA9P31269 AL442644.1-201ENST00000454390 3105 ntBASIC0.89□□□□□ -2.27
HOXA9P31269 RNU1-124P-201ENST00000363861 145 ntBASIC0.89□□□□□ -2.27
HOXA9P31269 RNU6-308P-201ENST00000390957 107 ntBASIC0.89□□□□□ -2.27
HOXA9P31269 MCFD2P1-201ENST00000417812 300 ntBASIC0.89□□□□□ -2.27
HOXA9P31269 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC0.89□□□□□ -2.27
HOXA9P31269 RPS20P10-201ENST00000451209 253 ntBASIC0.89□□□□□ -2.27
HOXA9P31269 RN7SKP88-201ENST00000516847 250 ntBASIC0.89□□□□□ -2.27
HOXA9P31269 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC0.89□□□□□ -2.27
HOXA9P31269 MIR4698-201ENST00000577795 80 ntBASIC0.89□□□□□ -2.27
HOXA9P31269 AL121655.1-201ENST00000605811 308 ntBASIC0.89□□□□□ -2.27
HOXA9P31269 BX284668.6-201ENST00000606899 438 ntBASIC0.89□□□□□ -2.27
HOXA9P31269 7SK.8-201ENST00000612110 250 ntBASIC0.89□□□□□ -2.27
HOXA9P31269 7SK.11-201ENST00000615477 250 ntBASIC0.89□□□□□ -2.27
HOXA9P31269 AL591926.4-201ENST00000616895 298 ntBASIC0.89□□□□□ -2.27
HOXA9P31269 7SK.13-201ENST00000622040 250 ntBASIC0.89□□□□□ -2.27
HOXA9P31269 MTND4P29-201ENST00000503122 1372 ntBASIC0.88□□□□□ -2.27
HOXA9P31269 Y_RNA.143-201ENST00000363520 106 ntBASIC0.88□□□□□ -2.27
HOXA9P31269 Y_RNA.462-201ENST00000384268 102 ntBASIC0.88□□□□□ -2.27
HOXA9P31269 RNU6-937P-201ENST00000384325 106 ntBASIC0.88□□□□□ -2.27
HOXA9P31269 MTND4P19-201ENST00000446659 478 ntBASIC0.88□□□□□ -2.27
HOXA9P31269 Y_RNA.639-201ENST00000458981 102 ntBASIC0.88□□□□□ -2.27
HOXA9P31269 RPL39P28-201ENST00000465655 155 ntBASIC0.88□□□□□ -2.27
HOXA9P31269 SNORD116-28-201ENST00000516123 91 ntBASIC0.88□□□□□ -2.27
HOXA9P31269 AC090049.2-201ENST00000550377 109 ntBASIC0.88□□□□□ -2.27
HOXA9P31269 RPS29P30-201ENST00000600975 111 ntBASIC0.88□□□□□ -2.27
HOXA9P31269 Y_RNA.772-201ENST00000606692 102 ntBASIC0.88□□□□□ -2.27
HOXA9P31269 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.88□□□□□ -2.27
HOXA9P31269 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC0.88□□□□□ -2.27
HOXA9P31269 Y_RNA.813-201ENST00000364639 102 ntBASIC0.87□□□□□ -2.27
HOXA9P31269 Y_RNA.310-201ENST00000365063 113 ntBASIC0.87□□□□□ -2.27
HOXA9P31269 Y_RNA.331-201ENST00000365267 102 ntBASIC0.87□□□□□ -2.27
HOXA9P31269 Y_RNA.394-201ENST00000383942 103 ntBASIC0.87□□□□□ -2.27
HOXA9P31269 RNU6-474P-201ENST00000384243 107 ntBASIC0.87□□□□□ -2.27
HOXA9P31269 SNORD63-201ENST00000384262 68 ntBASIC0.87□□□□□ -2.27
HOXA9P31269 SNORA25-201ENST00000384384 134 ntBASIC0.87□□□□□ -2.27
HOXA9P31269 MIR526A1-201ENST00000384897 85 ntBASIC0.87□□□□□ -2.27
HOXA9P31269 Y_RNA.645-201ENST00000391229 102 ntBASIC0.87□□□□□ -2.27
HOXA9P31269 MIR1302-11-201ENST00000408051 138 ntBASIC0.87□□□□□ -2.27
HOXA9P31269 MIR1302-9-201ENST00000408365 138 ntBASIC0.87□□□□□ -2.27
HOXA9P31269 MIR1302-10-201ENST00000408734 138 ntBASIC0.87□□□□□ -2.27
HOXA9P31269 PMCHL1-202ENST00000423102 261 ntBASIC0.87□□□□□ -2.27
HOXA9P31269 AC005042.3-201ENST00000453230 174 ntBASIC0.87□□□□□ -2.27
HOXA9P31269 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC0.87□□□□□ -2.27
HOXA9P31269 AC040926.1-201ENST00000530195 238 ntBASIC0.87□□□□□ -2.27
HOXA9P31269 DEFB117-201ENST00000602356 141 ntBASIC0.87□□□□□ -2.27
HOXA9P31269 AC005972.2-201ENST00000604690 348 ntBASIC0.87□□□□□ -2.27
HOXA9P31269 AL022345.2-201ENST00000606307 135 ntBASIC0.87□□□□□ -2.27
HOXA9P31269 MIR1302-2-201ENST00000607096 138 ntBASIC0.87□□□□□ -2.27
HOXA9P31269 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.86□□□□□ -2.27
HOXA9P31269 SNORD68-201ENST00000363214 84 ntBASIC0.86□□□□□ -2.27
HOXA9P31269 RNU6-833P-201ENST00000363486 107 ntBASIC0.86□□□□□ -2.27
HOXA9P31269 Y_RNA.286-201ENST00000364813 102 ntBASIC0.86□□□□□ -2.27
HOXA9P31269 RNU6-867P-201ENST00000364956 107 ntBASIC0.86□□□□□ -2.27
HOXA9P31269 SNORA2.2-201ENST00000365473 135 ntBASIC0.86□□□□□ -2.27
HOXA9P31269 Y_RNA.471-201ENST00000384312 102 ntBASIC0.86□□□□□ -2.27
HOXA9P31269 Y_RNA.551-201ENST00000384661 102 ntBASIC0.86□□□□□ -2.27
HOXA9P31269 AL590004.1-201ENST00000405321 300 ntBASIC0.86□□□□□ -2.27
HOXA9P31269 RNU4-30P-201ENST00000410245 143 ntBASIC0.86□□□□□ -2.27
HOXA9P31269 Y_RNA.621-201ENST00000411065 96 ntBASIC0.86□□□□□ -2.27
HOXA9P31269 PIGPP3-201ENST00000425307 415 ntBASIC0.86□□□□□ -2.27
HOXA9P31269 U8.20-201ENST00000459445 131 ntBASIC0.86□□□□□ -2.27
HOXA9P31269 RNU6-475P-201ENST00000516073 104 ntBASIC0.86□□□□□ -2.27
HOXA9P31269 MIR4762-201ENST00000585261 75 ntBASIC0.86□□□□□ -2.27
HOXA9P31269 GHRLOS.1-201ENST00000610995 70 ntBASIC0.86□□□□□ -2.27
HOXA9P31269 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC0.86□□□□□ -2.27
HOXA9P31269 AL138825.1-201ENST00000618587 192 ntBASIC0.86□□□□□ -2.27
HOXA9P31269 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC0.86□□□□□ -2.27
HOXA9P31269 U8.5-201ENST00000364528 136 ntBASIC0.85□□□□□ -2.27
HOXA9P31269 RNU5E-4P-201ENST00000364931 120 ntBASIC0.85□□□□□ -2.27
HOXA9P31269 Y_RNA.368-201ENST00000365547 113 ntBASIC0.85□□□□□ -2.27
HOXA9P31269 SNORD14.1-201ENST00000365609 90 ntBASIC0.85□□□□□ -2.27
HOXA9P31269 Y_RNA.439-201ENST00000384119 94 ntBASIC0.85□□□□□ -2.27
HOXA9P31269 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.85□□□□□ -2.27
HOXA9P31269 RNU6-855P-201ENST00000410395 104 ntBASIC0.85□□□□□ -2.27
HOXA9P31269 POLR2J4-204ENST00000418424 324 ntBASIC0.85□□□□□ -2.27
HOXA9P31269 AC104332.1-201ENST00000440471 797 ntBASIC0.85□□□□□ -2.27
HOXA9P31269 AC114811.1-201ENST00000507207 168 ntBASIC0.85□□□□□ -2.27
HOXA9P31269 RNU6-1170P-201ENST00000515974 106 ntBASIC0.85□□□□□ -2.27
HOXA9P31269 RNA5SP436-201ENST00000516020 115 ntBASIC0.85□□□□□ -2.27
HOXA9P31269 RNU6-1046P-201ENST00000516538 107 ntBASIC0.85□□□□□ -2.27
HOXA9P31269 RNU7-110P-201ENST00000516891 62 ntBASIC0.85□□□□□ -2.27
HOXA9P31269 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC0.85□□□□□ -2.27
HOXA9P31269 MIR3145-201ENST00000580727 82 ntBASIC0.85□□□□□ -2.27
HOXA9P31269 AC120024.3-201ENST00000603167 156 ntBASIC0.85□□□□□ -2.27
HOXA9P31269 AC104695.3-201ENST00000604052 296 ntBASIC0.85□□□□□ -2.27
HOXA9P31269 AL020996.3-201ENST00000606617 222 ntBASIC0.85□□□□□ -2.27
HOXA9P31269 AC011373.1-201ENST00000607270 237 ntBASIC0.85□□□□□ -2.27
HOXA9P31269 AC027335.2-201ENST00000624030 375 ntBASIC0.85□□□□□ -2.27
HOXA9P31269 AL008636.1-201ENST00000625038 1018 ntBASIC0.85□□□□□ -2.27
HOXA9P31269 Y_RNA.253-201ENST00000364562 112 ntBASIC0.84□□□□□ -2.27
HOXA9P31269 Y_RNA.341-201ENST00000365341 102 ntBASIC0.84□□□□□ -2.27
HOXA9P31269 MIR522-201ENST00000385071 87 ntBASIC0.84□□□□□ -2.27
HOXA9P31269 MIR891A-201ENST00000401237 79 ntBASIC0.84□□□□□ -2.27
HOXA9P31269 RNU6-1054P-201ENST00000411293 104 ntBASIC0.84□□□□□ -2.27
HOXA9P31269 snoU13.25-201ENST00000458945 104 ntBASIC0.84□□□□□ -2.27
HOXA9P31269 HMGN1P10-201ENST00000474557 553 ntBASIC0.84□□□□□ -2.27
HOXA9P31269 AC048334.1-201ENST00000477975 159 ntBASIC0.84□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 120.9 ms