Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 RNA5SP210-201ENST00000391034 120 ntBASIC3.06□□□□□ -1.92
LIG1P18858 ZNF271P-202ENST00000465539 1970 ntBASIC3.06□□□□□ -1.92
LIG1P18858 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC3.06□□□□□ -1.92
LIG1P18858 RNA5SP236-201ENST00000516169 116 ntBASIC3.06□□□□□ -1.92
LIG1P18858 RNU6-341P-201ENST00000516973 96 ntBASIC3.06□□□□□ -1.92
LIG1P18858 AL353149.1-201ENST00000610667 244 ntBASIC3.06□□□□□ -1.92
LIG1P18858 AL359075.3-201ENST00000613288 217 ntBASIC3.06□□□□□ -1.92
LIG1P18858 MIR338-201ENST00000636369 67 ntBASIC3.06□□□□□ -1.92
LIG1P18858 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC3.06□□□□□ -1.92
LIG1P18858 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC3.06□□□□□ -1.92
LIG1P18858 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
LIG1P18858 RNU6-888P-201ENST00000363010 101 ntBASIC3.05□□□□□ -1.92
LIG1P18858 RNU6-147P-201ENST00000383983 107 ntBASIC3.05□□□□□ -1.92
LIG1P18858 AL138827.1-201ENST00000402666 306 ntBASIC3.05□□□□□ -1.92
LIG1P18858 SNORA11.2-201ENST00000408318 127 ntBASIC3.05□□□□□ -1.92
LIG1P18858 AL021397.1-201ENST00000451806 248 ntBASIC3.05□□□□□ -1.92
LIG1P18858 AC018868.1-201ENST00000491307 315 ntBASIC3.05□□□□□ -1.92
LIG1P18858 MIR3129-201ENST00000581095 76 ntBASIC3.05□□□□□ -1.92
LIG1P18858 AC008507.4-201ENST00000585464 127 ntBASIC3.05□□□□□ -1.92
LIG1P18858 AC087685.1-201ENST00000587507 141 ntBASIC3.05□□□□□ -1.92
LIG1P18858 ELOCP29-201ENST00000588193 334 ntBASIC3.05□□□□□ -1.92
LIG1P18858 AL355297.2-201ENST00000604792 129 ntBASIC3.05□□□□□ -1.92
LIG1P18858 AL121890.5-201ENST00000620848 304 ntBASIC3.05□□□□□ -1.92
LIG1P18858 UGP2-230ENST00000626380 276 ntTSL 5 BASIC3.05□□□□□ -1.92
LIG1P18858 MIR6079-201ENST00000635807 62 ntBASIC3.05□□□□□ -1.92
LIG1P18858 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
LIG1P18858 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC3.04□□□□□ -1.92
LIG1P18858 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC3.04□□□□□ -1.92
LIG1P18858 Y_RNA.35-201ENST00000362601 101 ntBASIC3.04□□□□□ -1.92
LIG1P18858 SNORD61-201ENST00000384252 73 ntBASIC3.04□□□□□ -1.92
LIG1P18858 RNA5SP467-201ENST00000391274 118 ntBASIC3.04□□□□□ -1.92
LIG1P18858 AC003685.2-201ENST00000422795 395 ntBASIC3.04□□□□□ -1.92
LIG1P18858 AC011753.1-201ENST00000451001 220 ntBASIC3.04□□□□□ -1.92
LIG1P18858 AC233266.1-201ENST00000454518 96 ntBASIC3.04□□□□□ -1.92
LIG1P18858 RNA5SP356-201ENST00000515972 94 ntBASIC3.04□□□□□ -1.92
LIG1P18858 MIR4319-201ENST00000577285 85 ntBASIC3.04□□□□□ -1.92
LIG1P18858 MIR4635-201ENST00000583759 79 ntBASIC3.04□□□□□ -1.92
LIG1P18858 AC242852.1-201ENST00000612151 96 ntBASIC3.04□□□□□ -1.92
LIG1P18858 AC025166.1-201ENST00000612411 163 ntBASIC3.04□□□□□ -1.92
LIG1P18858 AC244015.1-201ENST00000622301 99 ntBASIC3.04□□□□□ -1.92
LIG1P18858 U6.108-201ENST00000637764 58 ntBASIC3.04□□□□□ -1.92
LIG1P18858 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC3.04□□□□□ -1.92
LIG1P18858 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
LIG1P18858 RNU6-880P-201ENST00000384526 107 ntBASIC3.03□□□□□ -1.92
LIG1P18858 SRIP3-201ENST00000413200 219 ntBASIC3.03□□□□□ -1.92
LIG1P18858 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC3.03□□□□□ -1.92
LIG1P18858 RNU6-1291P-201ENST00000516591 104 ntBASIC3.03□□□□□ -1.92
LIG1P18858 RNU6-667P-201ENST00000517186 102 ntBASIC3.03□□□□□ -1.92
LIG1P18858 SNORD14A-201ENST00000606526 91 ntBASIC3.03□□□□□ -1.92
LIG1P18858 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
LIG1P18858 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC3.03□□□□□ -1.92
LIG1P18858 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
LIG1P18858 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC3.03□□□□□ -1.93
LIG1P18858 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC3.03□□□□□ -1.93
LIG1P18858 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
LIG1P18858 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC3.02□□□□□ -1.93
LIG1P18858 SNORA12.1-201ENST00000390873 148 ntBASIC3.02□□□□□ -1.93
LIG1P18858 SNORD72-201ENST00000390994 80 ntBASIC3.02□□□□□ -1.93
LIG1P18858 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC3.02□□□□□ -1.93
LIG1P18858 RNU1-131P-201ENST00000458943 161 ntBASIC3.02□□□□□ -1.93
LIG1P18858 SNORD109B-201ENST00000458961 67 ntBASIC3.02□□□□□ -1.93
LIG1P18858 Y_RNA.649-201ENST00000459077 103 ntBASIC3.02□□□□□ -1.93
LIG1P18858 SNORD109A-201ENST00000459128 67 ntBASIC3.02□□□□□ -1.93
LIG1P18858 RNU6-1041P-201ENST00000516254 102 ntBASIC3.02□□□□□ -1.93
LIG1P18858 RNU6-113P-201ENST00000516653 101 ntBASIC3.02□□□□□ -1.93
LIG1P18858 RNU1-142P-201ENST00000516682 145 ntBASIC3.02□□□□□ -1.93
LIG1P18858 Y_RNA.714-201ENST00000517065 90 ntBASIC3.02□□□□□ -1.93
LIG1P18858 RNA5SP170-201ENST00000517150 101 ntBASIC3.02□□□□□ -1.93
LIG1P18858 IGKV1-22-201ENST00000524313 326 ntBASIC3.02□□□□□ -1.93
LIG1P18858 AC245884.12-201ENST00000615364 59 ntBASIC3.02□□□□□ -1.93
LIG1P18858 MIR6852-201ENST00000621699 66 ntBASIC3.02□□□□□ -1.93
LIG1P18858 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC3.02□□□□□ -1.93
LIG1P18858 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC3.01□□□□□ -1.93
LIG1P18858 MTND5P18-201ENST00000445624 1801 ntBASIC3.01□□□□□ -1.93
LIG1P18858 RNA5SP125-201ENST00000364843 120 ntBASIC3.01□□□□□ -1.93
LIG1P18858 Y_RNA.309-201ENST00000365046 111 ntBASIC3.01□□□□□ -1.93
LIG1P18858 EDDM3CP-201ENST00000415977 425 ntBASIC3.01□□□□□ -1.93
LIG1P18858 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC3.01□□□□□ -1.93
LIG1P18858 Y_RNA.99-201ENST00000363138 105 ntBASIC3□□□□□ -1.93
LIG1P18858 Y_RNA.267-201ENST00000364679 109 ntBASIC3□□□□□ -1.93
LIG1P18858 MIR548A2-201ENST00000384956 97 ntBASIC3□□□□□ -1.93
LIG1P18858 FTH1P12-201ENST00000432137 551 ntBASIC3□□□□□ -1.93
LIG1P18858 AC108938.1-201ENST00000451204 136 ntBASIC3□□□□□ -1.93
LIG1P18858 RN7SL636P-201ENST00000497504 294 ntBASIC3□□□□□ -1.93
LIG1P18858 AC096725.1-201ENST00000514266 313 ntBASIC3□□□□□ -1.93
LIG1P18858 Y_RNA.666-201ENST00000516187 112 ntBASIC3□□□□□ -1.93
LIG1P18858 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC3□□□□□ -1.93
LIG1P18858 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC3□□□□□ -1.93
LIG1P18858 MIR126-201ENST00000362291 85 ntBASIC2.99□□□□□ -1.93
LIG1P18858 MIR196B-201ENST00000384852 84 ntBASIC2.99□□□□□ -1.93
LIG1P18858 MIR515-2-201ENST00000384883 83 ntBASIC2.99□□□□□ -1.93
LIG1P18858 MIR515-1-201ENST00000384884 83 ntBASIC2.99□□□□□ -1.93
LIG1P18858 SNORD77.3-201ENST00000391113 65 ntBASIC2.99□□□□□ -1.93
LIG1P18858 AL117342.1-201ENST00000404861 406 ntBASIC2.99□□□□□ -1.93
LIG1P18858 SNRPGP13-201ENST00000442212 177 ntBASIC2.99□□□□□ -1.93
LIG1P18858 SNORA59A-201ENST00000459326 152 ntBASIC2.99□□□□□ -1.93
LIG1P18858 RNU7-94P-201ENST00000459576 63 ntBASIC2.99□□□□□ -1.93
LIG1P18858 RNU6-693P-201ENST00000516134 107 ntBASIC2.99□□□□□ -1.93
LIG1P18858 RNU6-1270P-201ENST00000517128 108 ntBASIC2.99□□□□□ -1.93
LIG1P18858 IGHVIII-67-2-201ENST00000519849 88 ntBASIC2.99□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 105.3 ms