Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 SNRPGP10-201ENST00000432323 225 ntBASIC0.93□□□□□ -2.26
SDC1P18827 RPL39P39-201ENST00000455840 151 ntBASIC0.93□□□□□ -2.26
SDC1P18827 LINC01399-202ENST00000458450 244 ntBASIC0.93□□□□□ -2.26
SDC1P18827 HMGN1P10-201ENST00000474557 553 ntBASIC0.93□□□□□ -2.26
SDC1P18827 RNU6-1046P-201ENST00000516538 107 ntBASIC0.93□□□□□ -2.26
SDC1P18827 SNORD45.4-201ENST00000516629 73 ntBASIC0.93□□□□□ -2.26
SDC1P18827 AC024405.2-202ENST00000532731 184 ntBASIC0.93□□□□□ -2.26
SDC1P18827 POLR3GP1-201ENST00000594073 261 ntBASIC0.93□□□□□ -2.26
SDC1P18827 C8orf59P2-201ENST00000603441 271 ntBASIC0.93□□□□□ -2.26
SDC1P18827 AP003357.1-201ENST00000604497 148 ntBASIC0.93□□□□□ -2.26
SDC1P18827 AC090971.5-201ENST00000621102 293 ntBASIC0.93□□□□□ -2.26
SDC1P18827 AC091895.1-201ENST00000624494 256 ntBASIC0.93□□□□□ -2.26
SDC1P18827 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC0.92□□□□□ -2.26
SDC1P18827 Y_RNA.148-201ENST00000363557 117 ntBASIC0.92□□□□□ -2.26
SDC1P18827 RNU1-124P-201ENST00000363861 145 ntBASIC0.92□□□□□ -2.26
SDC1P18827 U8.7-201ENST00000364940 136 ntBASIC0.92□□□□□ -2.26
SDC1P18827 Y_RNA.327-201ENST00000365201 102 ntBASIC0.92□□□□□ -2.26
SDC1P18827 AC117470.1-201ENST00000381974 330 ntBASIC0.92□□□□□ -2.26
SDC1P18827 Y_RNA.383-201ENST00000383855 97 ntBASIC0.92□□□□□ -2.26
SDC1P18827 Y_RNA.394-201ENST00000383942 103 ntBASIC0.92□□□□□ -2.26
SDC1P18827 Y_RNA.445-201ENST00000384168 102 ntBASIC0.92□□□□□ -2.26
SDC1P18827 Y_RNA.645-201ENST00000391229 102 ntBASIC0.92□□□□□ -2.26
SDC1P18827 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC0.92□□□□□ -2.26
SDC1P18827 AC092473.1-201ENST00000441098 221 ntBASIC0.92□□□□□ -2.26
SDC1P18827 RPS23P4-201ENST00000487908 423 ntBASIC0.92□□□□□ -2.26
SDC1P18827 AC117454.1-201ENST00000491120 168 ntBASIC0.92□□□□□ -2.26
SDC1P18827 SNORD79.1-201ENST00000516069 84 ntBASIC0.92□□□□□ -2.26
SDC1P18827 RNU7-115P-201ENST00000516433 55 ntBASIC0.92□□□□□ -2.26
SDC1P18827 RNU7-116P-201ENST00000516940 62 ntBASIC0.92□□□□□ -2.26
SDC1P18827 AC090142.3-201ENST00000519012 385 ntBASIC0.92□□□□□ -2.26
SDC1P18827 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC0.92□□□□□ -2.26
SDC1P18827 MIR3192-201ENST00000584920 77 ntBASIC0.92□□□□□ -2.26
SDC1P18827 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC0.92□□□□□ -2.26
SDC1P18827 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC0.92□□□□□ -2.26
SDC1P18827 MTND4P29-201ENST00000503122 1372 ntBASIC0.92□□□□□ -2.26
SDC1P18827 RNA5SP432-201ENST00000362480 116 ntBASIC0.91□□□□□ -2.26
SDC1P18827 RNU6-1084P-201ENST00000362498 107 ntBASIC0.91□□□□□ -2.26
SDC1P18827 RNU4-80P-201ENST00000363200 141 ntBASIC0.91□□□□□ -2.26
SDC1P18827 SNORD50B-201ENST00000364995 70 ntBASIC0.91□□□□□ -2.26
SDC1P18827 RNU6-131P-201ENST00000391144 107 ntBASIC0.91□□□□□ -2.26
SDC1P18827 AC024067.1-201ENST00000426199 223 ntBASIC0.91□□□□□ -2.26
SDC1P18827 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC0.91□□□□□ -2.26
SDC1P18827 POLR2KP2-201ENST00000438155 177 ntBASIC0.91□□□□□ -2.26
SDC1P18827 U8.19-201ENST00000459095 133 ntBASIC0.91□□□□□ -2.26
SDC1P18827 RPS26P48-201ENST00000491713 339 ntBASIC0.91□□□□□ -2.26
SDC1P18827 RNU6-397P-201ENST00000516226 104 ntBASIC0.91□□□□□ -2.26
SDC1P18827 AC127455.1-201ENST00000565496 145 ntBASIC0.91□□□□□ -2.26
SDC1P18827 AC124312.5-201ENST00000604451 268 ntBASIC0.91□□□□□ -2.26
SDC1P18827 MIR548AY-201ENST00000617669 107 ntBASIC0.91□□□□□ -2.26
SDC1P18827 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC0.91□□□□□ -2.26
SDC1P18827 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC0.91□□□□□ -2.26
SDC1P18827 RNU6-1048P-201ENST00000364054 107 ntBASIC0.9□□□□□ -2.27
SDC1P18827 Y_RNA.203-201ENST00000364106 102 ntBASIC0.9□□□□□ -2.27
SDC1P18827 RNU6-450P-201ENST00000364654 107 ntBASIC0.9□□□□□ -2.27
SDC1P18827 RNU5E-4P-201ENST00000364931 120 ntBASIC0.9□□□□□ -2.27
SDC1P18827 snoU2-30.1-201ENST00000365012 70 ntBASIC0.9□□□□□ -2.27
SDC1P18827 Y_RNA.424-201ENST00000384063 103 ntBASIC0.9□□□□□ -2.27
SDC1P18827 RNU6-474P-201ENST00000384243 107 ntBASIC0.9□□□□□ -2.27
SDC1P18827 RPL23AP54-201ENST00000495129 419 ntBASIC0.9□□□□□ -2.27
SDC1P18827 MIR4300-201ENST00000581016 96 ntBASIC0.9□□□□□ -2.27
SDC1P18827 RAC1P9-201ENST00000604990 392 ntBASIC0.9□□□□□ -2.27
SDC1P18827 SNORD113-5-201ENST00000607261 78 ntBASIC0.9□□□□□ -2.27
SDC1P18827 AL391903.3-201ENST00000612158 163 ntBASIC0.9□□□□□ -2.27
SDC1P18827 AL160413.1-201ENST00000622780 310 ntBASIC0.9□□□□□ -2.27
SDC1P18827 RNU6-969P-201ENST00000383900 105 ntBASIC0.89□□□□□ -2.27
SDC1P18827 RNU6-102P-201ENST00000384485 104 ntBASIC0.89□□□□□ -2.27
SDC1P18827 MIR19B1-201ENST00000384829 87 ntBASIC0.89□□□□□ -2.27
SDC1P18827 MIR136-201ENST00000385207 82 ntBASIC0.89□□□□□ -2.27
SDC1P18827 SNORD12-201ENST00000391002 90 ntBASIC0.89□□□□□ -2.27
SDC1P18827 RNU2-14P-201ENST00000411053 191 ntBASIC0.89□□□□□ -2.27
SDC1P18827 AC063976.4-201ENST00000421971 163 ntBASIC0.89□□□□□ -2.27
SDC1P18827 AC002429.1-201ENST00000437672 148 ntBASIC0.89□□□□□ -2.27
SDC1P18827 AC245047.8-201ENST00000456455 284 ntBASIC0.89□□□□□ -2.27
SDC1P18827 SEPT14P8-201ENST00000508026 178 ntBASIC0.89□□□□□ -2.27
SDC1P18827 Y_RNA.715-201ENST00000517082 110 ntBASIC0.89□□□□□ -2.27
SDC1P18827 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC0.89□□□□□ -2.27
SDC1P18827 AC104695.3-201ENST00000604052 296 ntBASIC0.89□□□□□ -2.27
SDC1P18827 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC0.89□□□□□ -2.27
SDC1P18827 SNORD113-8-201ENST00000363497 74 ntBASIC0.88□□□□□ -2.27
SDC1P18827 Y_RNA.222-201ENST00000364264 102 ntBASIC0.88□□□□□ -2.27
SDC1P18827 RNU6-867P-201ENST00000364956 107 ntBASIC0.88□□□□□ -2.27
SDC1P18827 Y_RNA.418-201ENST00000384029 102 ntBASIC0.88□□□□□ -2.27
SDC1P18827 RNU6-823P-201ENST00000391042 103 ntBASIC0.88□□□□□ -2.27
SDC1P18827 SNORA75.2-201ENST00000391138 150 ntBASIC0.88□□□□□ -2.27
SDC1P18827 SNORA75.3-201ENST00000391231 150 ntBASIC0.88□□□□□ -2.27
SDC1P18827 RNU6ATAC19P-201ENST00000408096 110 ntBASIC0.88□□□□□ -2.27
SDC1P18827 HMGN2P32-201ENST00000444648 269 ntBASIC0.88□□□□□ -2.27
SDC1P18827 RNU7-141P-201ENST00000459304 62 ntBASIC0.88□□□□□ -2.27
SDC1P18827 COX6CP14-201ENST00000469580 174 ntBASIC0.88□□□□□ -2.27
SDC1P18827 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC0.88□□□□□ -2.27
SDC1P18827 TRMT112P2-201ENST00000512910 132 ntBASIC0.88□□□□□ -2.27
SDC1P18827 SNORA74.3-201ENST00000517108 154 ntBASIC0.88□□□□□ -2.27
SDC1P18827 MIR4498-201ENST00000577599 66 ntBASIC0.88□□□□□ -2.27
SDC1P18827 PRELID3BP2-201ENST00000605362 201 ntBASIC0.88□□□□□ -2.27
SDC1P18827 AL359821.1-201ENST00000605519 182 ntBASIC0.88□□□□□ -2.27
SDC1P18827 MIR376A1-201ENST00000616574 68 ntBASIC0.88□□□□□ -2.27
SDC1P18827 AC012676.2-201ENST00000619258 186 ntBASIC0.88□□□□□ -2.27
SDC1P18827 AC090574.1-201ENST00000623186 233 ntBASIC0.88□□□□□ -2.27
SDC1P18827 AL442644.1-201ENST00000454390 3105 ntBASIC0.88□□□□□ -2.27
SDC1P18827 AL391516.1-201ENST00000554380 2449 ntBASIC0.87□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 134.8 ms