Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
CBX4O00257 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.39□□□□□ -2.03
CBX4O00257 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
CBX4O00257 MIR21-201ENST00000362134 72 ntBASIC2.38□□□□□ -2.03
CBX4O00257 SNORD68-201ENST00000363214 84 ntBASIC2.38□□□□□ -2.03
CBX4O00257 RNU6-131P-201ENST00000391144 107 ntBASIC2.38□□□□□ -2.03
CBX4O00257 RNU2-55P-201ENST00000411146 174 ntBASIC2.38□□□□□ -2.03
CBX4O00257 AL591806.2-201ENST00000433122 173 ntBASIC2.38□□□□□ -2.03
CBX4O00257 SEPT7P4-201ENST00000437076 306 ntBASIC2.38□□□□□ -2.03
CBX4O00257 AC007336.1-201ENST00000576365 3828 ntBASIC2.38□□□□□ -2.03
CBX4O00257 MIR4431-201ENST00000579990 94 ntBASIC2.38□□□□□ -2.03
CBX4O00257 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
CBX4O00257 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
CBX4O00257 Y_RNA.242-201ENST00000364473 110 ntBASIC2.37□□□□□ -2.03
CBX4O00257 Y_RNA.622-201ENST00000411091 108 ntBASIC2.37□□□□□ -2.03
CBX4O00257 STAG3L5P-204ENST00000443759 179 ntBASIC2.37□□□□□ -2.03
CBX4O00257 AC055731.1-201ENST00000474387 401 ntBASIC2.37□□□□□ -2.03
CBX4O00257 OR9P1P-201ENST00000496431 281 ntBASIC2.37□□□□□ -2.03
CBX4O00257 RNU6-1299P-201ENST00000516316 100 ntBASIC2.37□□□□□ -2.03
CBX4O00257 RNU6-126P-201ENST00000516685 103 ntBASIC2.37□□□□□ -2.03
CBX4O00257 RNA5SP481-201ENST00000516814 122 ntBASIC2.37□□□□□ -2.03
CBX4O00257 RNA5SP402-201ENST00000517148 110 ntBASIC2.37□□□□□ -2.03
CBX4O00257 HMSD-204ENST00000526932 162 ntTSL 3 BASIC2.37□□□□□ -2.03
CBX4O00257 AC087685.1-201ENST00000587507 141 ntBASIC2.37□□□□□ -2.03
CBX4O00257 AL049779.4-201ENST00000604500 156 ntBASIC2.37□□□□□ -2.03
CBX4O00257 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.37□□□□□ -2.03
CBX4O00257 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
CBX4O00257 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.37□□□□□ -2.03
CBX4O00257 RNU6-112P-201ENST00000363599 104 ntBASIC2.36□□□□□ -2.03
CBX4O00257 Y_RNA.432-201ENST00000384087 111 ntBASIC2.36□□□□□ -2.03
CBX4O00257 MIR802-201ENST00000390235 94 ntBASIC2.36□□□□□ -2.03
CBX4O00257 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC2.36□□□□□ -2.03
CBX4O00257 AC107027.2-201ENST00000512197 115 ntBASIC2.36□□□□□ -2.03
CBX4O00257 SNORD77.4-201ENST00000516158 81 ntBASIC2.36□□□□□ -2.03
CBX4O00257 SNORA31.11-201ENST00000516528 139 ntBASIC2.36□□□□□ -2.03
CBX4O00257 AC015712.3-201ENST00000559380 164 ntBASIC2.36□□□□□ -2.03
CBX4O00257 MIR4662B-201ENST00000579498 81 ntBASIC2.36□□□□□ -2.03
CBX4O00257 AL137847.3-201ENST00000611521 109 ntBASIC2.36□□□□□ -2.03
CBX4O00257 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
CBX4O00257 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC2.36□□□□□ -2.03
CBX4O00257 SNORD45.3-201ENST00000363836 72 ntBASIC2.35□□□□□ -2.03
CBX4O00257 RNA5SP99-201ENST00000364020 114 ntBASIC2.35□□□□□ -2.03
CBX4O00257 SNORA12.1-201ENST00000390873 148 ntBASIC2.35□□□□□ -2.03
CBX4O00257 AL034345.1-201ENST00000407768 123 ntBASIC2.35□□□□□ -2.03
CBX4O00257 RNU6-1135P-201ENST00000411083 103 ntBASIC2.35□□□□□ -2.03
CBX4O00257 RNU5E-9P-201ENST00000411164 104 ntBASIC2.35□□□□□ -2.03
CBX4O00257 snoU13.23-201ENST00000458863 104 ntBASIC2.35□□□□□ -2.03
CBX4O00257 RNU7-149P-201ENST00000516739 59 ntBASIC2.35□□□□□ -2.03
CBX4O00257 RNU6-1212P-201ENST00000517023 104 ntBASIC2.35□□□□□ -2.03
CBX4O00257 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC2.35□□□□□ -2.03
CBX4O00257 MIR5007-201ENST00000583098 95 ntBASIC2.35□□□□□ -2.03
CBX4O00257 AC104465.1-201ENST00000611365 139 ntBASIC2.35□□□□□ -2.03
CBX4O00257 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC2.35□□□□□ -2.03
CBX4O00257 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.03
CBX4O00257 RNU4-84P-201ENST00000364200 139 ntBASIC2.34□□□□□ -2.03
CBX4O00257 Y_RNA.272-201ENST00000364696 102 ntBASIC2.34□□□□□ -2.03
CBX4O00257 RNU6-643P-201ENST00000384018 107 ntBASIC2.34□□□□□ -2.03
CBX4O00257 RNU1-138P-201ENST00000384093 164 ntBASIC2.34□□□□□ -2.03
CBX4O00257 MIR522-201ENST00000385071 87 ntBASIC2.34□□□□□ -2.03
CBX4O00257 SNORA26-201ENST00000391286 122 ntBASIC2.34□□□□□ -2.03
CBX4O00257 RNU4-43P-201ENST00000410628 137 ntBASIC2.34□□□□□ -2.03
CBX4O00257 FTH1P12-201ENST00000432137 551 ntBASIC2.34□□□□□ -2.03
CBX4O00257 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.34□□□□□ -2.03
CBX4O00257 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC2.34□□□□□ -2.03
CBX4O00257 AC011753.1-201ENST00000451001 220 ntBASIC2.34□□□□□ -2.03
CBX4O00257 RNA5SP57-201ENST00000459463 123 ntBASIC2.34□□□□□ -2.03
CBX4O00257 RPL23AP63-201ENST00000498752 471 ntBASIC2.34□□□□□ -2.03
CBX4O00257 RNU6-561P-201ENST00000516222 102 ntBASIC2.34□□□□□ -2.03
CBX4O00257 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.34□□□□□ -2.03
CBX4O00257 Pinc.1-201ENST00000616452 154 ntBASIC2.34□□□□□ -2.03
CBX4O00257 MIR203B-201ENST00000636080 86 ntBASIC2.34□□□□□ -2.03
CBX4O00257 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.03
CBX4O00257 Y_RNA.8-201ENST00000362353 102 ntBASIC2.33□□□□□ -2.04
CBX4O00257 U8.5-201ENST00000364528 136 ntBASIC2.33□□□□□ -2.04
CBX4O00257 RNU6-1138P-201ENST00000365359 106 ntBASIC2.33□□□□□ -2.04
CBX4O00257 RNU6-296P-201ENST00000384608 107 ntBASIC2.33□□□□□ -2.04
CBX4O00257 RNU6-239P-201ENST00000390990 99 ntBASIC2.33□□□□□ -2.04
CBX4O00257 AL603908.1-201ENST00000406098 201 ntBASIC2.33□□□□□ -2.04
CBX4O00257 RNU2-70P-201ENST00000410718 179 ntBASIC2.33□□□□□ -2.04
CBX4O00257 AC006461.1-201ENST00000412637 326 ntBASIC2.33□□□□□ -2.04
CBX4O00257 HSPE1P9-201ENST00000440046 311 ntBASIC2.33□□□□□ -2.04
CBX4O00257 SNRPGP8-201ENST00000454064 226 ntBASIC2.33□□□□□ -2.04
CBX4O00257 NDUFA4P2-201ENST00000489989 244 ntBASIC2.33□□□□□ -2.04
CBX4O00257 AC108210.2-201ENST00000503681 201 ntBASIC2.33□□□□□ -2.04
CBX4O00257 SNORA31.10-201ENST00000516482 106 ntBASIC2.33□□□□□ -2.04
CBX4O00257 RNA5SP437-201ENST00000517249 129 ntBASIC2.33□□□□□ -2.04
CBX4O00257 MIR1273D-201ENST00000577266 86 ntBASIC2.33□□□□□ -2.04
CBX4O00257 MIR3144-201ENST00000579460 79 ntBASIC2.33□□□□□ -2.04
CBX4O00257 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC2.33□□□□□ -2.04
CBX4O00257 RNU6-1084P-201ENST00000362498 107 ntBASIC2.32□□□□□ -2.04
CBX4O00257 RNU6-804P-201ENST00000384286 107 ntBASIC2.32□□□□□ -2.04
CBX4O00257 RNU6-394P-201ENST00000410735 107 ntBASIC2.32□□□□□ -2.04
CBX4O00257 AL158823.1-201ENST00000418441 478 ntBASIC2.32□□□□□ -2.04
CBX4O00257 AL356320.1-201ENST00000429616 163 ntBASIC2.32□□□□□ -2.04
CBX4O00257 RNU7-34P-201ENST00000459394 64 ntBASIC2.32□□□□□ -2.04
CBX4O00257 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC2.32□□□□□ -2.04
CBX4O00257 MIR4709-201ENST00000577272 72 ntBASIC2.32□□□□□ -2.04
CBX4O00257 MIR4762-201ENST00000585261 75 ntBASIC2.32□□□□□ -2.04
CBX4O00257 MIR6766-201ENST00000622641 72 ntBASIC2.32□□□□□ -2.04
CBX4O00257 PLD1-217ENST00000627725 174 ntTSL 5 BASIC2.32□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 132.6 ms