| APPL1 | Q9UKG1 | AL031003.1-201 | ENST00000404229 | 172 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | RNU6ATAC20P-201 | ENST00000408436 | 127 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | KCNMA1-AS2-201 | ENST00000428936 | 427 nt | TSL 3 BASIC | 0.95 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | AL162725.1-201 | ENST00000435405 | 301 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | FCF1P4-201 | ENST00000448326 | 183 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | RNU6-1012P-201 | ENST00000516606 | 109 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | Y_RNA.718-201 | ENST00000517110 | 102 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | MIR4659A-201 | ENST00000580269 | 81 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | UBE2V2P2-201 | ENST00000587677 | 504 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | AC211469.2-201 | ENST00000605461 | 205 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | AC004832.4-201 | ENST00000608952 | 331 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | AL132765.2-201 | ENST00000610812 | 351 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | AC084781.2-201 | ENST00000615568 | 161 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | AC240442.1-201 | ENST00000616055 | 283 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | U2.1-201 | ENST00000618978 | 145 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | AC008163.1-202 | ENST00000636004 | 2889 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | Y_RNA.363-201 | ENST00000365529 | 113 nt | BASIC | 0.94 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | MIR942-201 | ENST00000401111 | 86 nt | BASIC | 0.94 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | RNU6-1199P-201 | ENST00000411249 | 104 nt | BASIC | 0.94 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | PIGPP3-201 | ENST00000425307 | 415 nt | BASIC | 0.94 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | AC245047.8-201 | ENST00000456455 | 284 nt | BASIC | 0.94 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | RNU7-90P-201 | ENST00000459216 | 62 nt | BASIC | 0.94 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | AC091951.2-201 | ENST00000500762 | 203 nt | BASIC | 0.94 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | AC022616.4-201 | ENST00000522985 | 181 nt | BASIC | 0.94 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | AC005176.2-201 | ENST00000596933 | 147 nt | BASIC | 0.94 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | RNU6-490P-201 | ENST00000362985 | 107 nt | BASIC | 0.93 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | RNU1-36P-201 | ENST00000365130 | 165 nt | BASIC | 0.93 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | Y_RNA.336-201 | ENST00000365307 | 109 nt | BASIC | 0.93 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | MIR628-201 | ENST00000385229 | 95 nt | BASIC | 0.93 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | SNORD78.2-201 | ENST00000391076 | 69 nt | BASIC | 0.93 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | RNU2-54P-201 | ENST00000410299 | 190 nt | BASIC | 0.93 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | SNORD124-201 | ENST00000459577 | 104 nt | BASIC | 0.93 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | RPL39P28-201 | ENST00000465655 | 155 nt | BASIC | 0.93 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | AC108516.1-201 | ENST00000503666 | 257 nt | TSL 2 BASIC | 0.93 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | RNU6-155P-201 | ENST00000516347 | 100 nt | BASIC | 0.93 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | AC090142.3-201 | ENST00000519012 | 385 nt | BASIC | 0.93 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | AL355375.2-201 | ENST00000574825 | 175 nt | BASIC | 0.93 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | AC133104.2-201 | ENST00000615272 | 193 nt | BASIC | 0.93 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | U6.92-201 | ENST00000636464 | 89 nt | BASIC | 0.93 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | OSBPL1A-217 | ENST00000638614 | 84 nt | TSL 5 BASIC | 0.93 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | ANGPTL3-201 | ENST00000371129 | 2805 nt | APPRIS P1 TSL 1 (best) BASIC | 0.93 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | RNU6-324P-201 | ENST00000363957 | 106 nt | BASIC | 0.92 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | RNY1-201 | ENST00000364228 | 113 nt | BASIC | 0.92 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | Y_RNA.384-201 | ENST00000383909 | 102 nt | BASIC | 0.92 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | RNU6-1040P-201 | ENST00000383974 | 107 nt | BASIC | 0.92 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | Y_RNA.446-201 | ENST00000384178 | 104 nt | BASIC | 0.92 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | MIR526A1-201 | ENST00000384897 | 85 nt | BASIC | 0.92 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | LINC00448-201 | ENST00000438352 | 402 nt | TSL 3 BASIC | 0.92 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | AL353747.2-201 | ENST00000439207 | 205 nt | TSL 3 BASIC | 0.92 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | U8.19-201 | ENST00000459095 | 133 nt | BASIC | 0.92 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | Y_RNA.632-201 | ENST00000459189 | 102 nt | BASIC | 0.92 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | AC092071.1-201 | ENST00000597260 | 549 nt | TSL 5 BASIC | 0.92 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | Y_RNA.463-201 | ENST00000384271 | 102 nt | BASIC | 0.91 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | MIR15B-201 | ENST00000385045 | 98 nt | BASIC | 0.91 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | RNU2-64P-201 | ENST00000411315 | 191 nt | BASIC | 0.91 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | AC099799.1-201 | ENST00000439809 | 192 nt | BASIC | 0.91 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | AC093019.1-201 | ENST00000443135 | 252 nt | BASIC | 0.91 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | RPS20P10-201 | ENST00000451209 | 253 nt | BASIC | 0.91 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | RNU7-21P-201 | ENST00000459430 | 62 nt | BASIC | 0.91 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | AC114811.1-201 | ENST00000507207 | 168 nt | BASIC | 0.91 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | SNORA25.10-201 | ENST00000515926 | 124 nt | BASIC | 0.91 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | RNU6-507P-201 | ENST00000516045 | 100 nt | BASIC | 0.91 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | RNU6-436P-201 | ENST00000516171 | 114 nt | BASIC | 0.91 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | AC024382.1-201 | ENST00000520224 | 292 nt | TSL 3 BASIC | 0.91 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | AP001825.1-201 | ENST00000534275 | 351 nt | TSL 2 BASIC | 0.91 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | AC006600.1-201 | ENST00000572529 | 153 nt | BASIC | 0.91 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | MIR3973-201 | ENST00000579824 | 107 nt | BASIC | 0.91 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | AL096861.1-201 | ENST00000610899 | 123 nt | BASIC | 0.91 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | AC104985.2-201 | ENST00000620598 | 500 nt | BASIC | 0.91 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | CCDC14-221 | ENST00000489746 | 6476 nt | APPRIS ALT2 TSL 1 (best) BASIC | 0.91 | □□□□□ -2.26 | | |
| APPL1 | Q9UKG1 | C9orf84-205 | ENST00000394779 | 5060 nt | APPRIS ALT2 TSL 2 BASIC | 0.9 | □□□□□ -2.27 | | |
| APPL1 | Q9UKG1 | U8.5-201 | ENST00000364528 | 136 nt | BASIC | 0.9 | □□□□□ -2.27 | | |
| APPL1 | Q9UKG1 | Y_RNA.496-201 | ENST00000384444 | 101 nt | BASIC | 0.9 | □□□□□ -2.27 | | |
| APPL1 | Q9UKG1 | Y_RNA.529-201 | ENST00000384586 | 119 nt | BASIC | 0.9 | □□□□□ -2.27 | | |
| APPL1 | Q9UKG1 | RPS26P48-201 | ENST00000491713 | 339 nt | BASIC | 0.9 | □□□□□ -2.27 | | |
| APPL1 | Q9UKG1 | RNU6-875P-201 | ENST00000516488 | 106 nt | BASIC | 0.9 | □□□□□ -2.27 | | |
| APPL1 | Q9UKG1 | AC093027.1-201 | ENST00000546698 | 429 nt | BASIC | 0.9 | □□□□□ -2.27 | | |
| APPL1 | Q9UKG1 | AL391903.3-201 | ENST00000612158 | 163 nt | BASIC | 0.9 | □□□□□ -2.27 | | |
| APPL1 | Q9UKG1 | AL591926.4-201 | ENST00000616895 | 298 nt | BASIC | 0.9 | □□□□□ -2.27 | | |
| APPL1 | Q9UKG1 | SERPINI2-207 | ENST00000476257 | 1837 nt | APPRIS P1 TSL 5 BASIC | 0.89 | □□□□□ -2.27 | | |
| APPL1 | Q9UKG1 | Y_RNA.27-201 | ENST00000362540 | 103 nt | BASIC | 0.89 | □□□□□ -2.27 | | |
| APPL1 | Q9UKG1 | Y_RNA.112-201 | ENST00000363250 | 102 nt | BASIC | 0.89 | □□□□□ -2.27 | | |
| APPL1 | Q9UKG1 | RNU6-969P-201 | ENST00000383900 | 105 nt | BASIC | 0.89 | □□□□□ -2.27 | | |
| APPL1 | Q9UKG1 | RNU2-61P-201 | ENST00000411069 | 191 nt | BASIC | 0.89 | □□□□□ -2.27 | | |
| APPL1 | Q9UKG1 | FABP5P4-201 | ENST00000437203 | 171 nt | BASIC | 0.89 | □□□□□ -2.27 | | |
| APPL1 | Q9UKG1 | AL035258.1-201 | ENST00000439450 | 439 nt | TSL 3 BASIC | 0.89 | □□□□□ -2.27 | | |
| APPL1 | Q9UKG1 | AL138808.1-201 | ENST00000441428 | 371 nt | TSL 2 BASIC | 0.89 | □□□□□ -2.27 | | |
| APPL1 | Q9UKG1 | ACA64.5-201 | ENST00000516207 | 127 nt | BASIC | 0.89 | □□□□□ -2.27 | | |
| APPL1 | Q9UKG1 | Y_RNA.714-201 | ENST00000517065 | 90 nt | BASIC | 0.89 | □□□□□ -2.27 | | |
| APPL1 | Q9UKG1 | PRELID3BP2-201 | ENST00000605362 | 201 nt | BASIC | 0.89 | □□□□□ -2.27 | | |
| APPL1 | Q9UKG1 | MIR6515-201 | ENST00000619843 | 57 nt | BASIC | 0.89 | □□□□□ -2.27 | | |
| APPL1 | Q9UKG1 | AL008636.1-201 | ENST00000625038 | 1018 nt | BASIC | 0.89 | □□□□□ -2.27 | | |
| APPL1 | Q9UKG1 | MIR4272-201 | ENST00000635924 | 64 nt | BASIC | 0.89 | □□□□□ -2.27 | | |
| APPL1 | Q9UKG1 | RNU6-1084P-201 | ENST00000362498 | 107 nt | BASIC | 0.88 | □□□□□ -2.27 | | |
| APPL1 | Q9UKG1 | Y_RNA.58-201 | ENST00000362807 | 102 nt | BASIC | 0.88 | □□□□□ -2.27 | | |
| APPL1 | Q9UKG1 | Y_RNA.146-201 | ENST00000363549 | 102 nt | BASIC | 0.88 | □□□□□ -2.27 | | |
| APPL1 | Q9UKG1 | Y_RNA.154-201 | ENST00000363624 | 102 nt | BASIC | 0.88 | □□□□□ -2.27 | | |
| APPL1 | Q9UKG1 | RNY3P1-201 | ENST00000365085 | 102 nt | BASIC | 0.88 | □□□□□ -2.27 | | |
| APPL1 | Q9UKG1 | Y_RNA.329-201 | ENST00000365209 | 107 nt | BASIC | 0.88 | □□□□□ -2.27 | | |
| APPL1 | Q9UKG1 | Y_RNA.356-201 | ENST00000365475 | 113 nt | BASIC | 0.88 | □□□□□ -2.27 | | |