Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 U4.1-201ENST00000620349 87 ntBASIC1.65□□□□□ -2.15
LIMA1Q9UHB6 AP000648.3-201ENST00000623539 4507 ntBASIC1.65□□□□□ -2.15
LIMA1Q9UHB6 WWP1P1-201ENST00000466609 2769 ntBASIC1.64□□□□□ -2.15
LIMA1Q9UHB6 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC1.64□□□□□ -2.15
LIMA1Q9UHB6 Y_RNA.136-201ENST00000363444 102 ntBASIC1.64□□□□□ -2.15
LIMA1Q9UHB6 Y_RNA.172-201ENST00000363765 102 ntBASIC1.64□□□□□ -2.15
LIMA1Q9UHB6 SNORD116-13-201ENST00000384408 92 ntBASIC1.64□□□□□ -2.15
LIMA1Q9UHB6 RNU6-997P-201ENST00000384725 107 ntBASIC1.64□□□□□ -2.15
LIMA1Q9UHB6 MIR1323-201ENST00000408090 73 ntBASIC1.64□□□□□ -2.15
LIMA1Q9UHB6 MIR1302-6-201ENST00000408466 90 ntBASIC1.64□□□□□ -2.15
LIMA1Q9UHB6 RNA5SP511-201ENST00000410487 115 ntBASIC1.64□□□□□ -2.15
LIMA1Q9UHB6 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC1.64□□□□□ -2.15
LIMA1Q9UHB6 MTCO1P5-201ENST00000433573 344 ntBASIC1.64□□□□□ -2.15
LIMA1Q9UHB6 AL162725.1-201ENST00000435405 301 ntBASIC1.64□□□□□ -2.15
LIMA1Q9UHB6 AC023790.1-201ENST00000482174 347 ntBASIC1.64□□□□□ -2.15
LIMA1Q9UHB6 SNORA25.15-201ENST00000516487 89 ntBASIC1.64□□□□□ -2.15
LIMA1Q9UHB6 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.64□□□□□ -2.15
LIMA1Q9UHB6 DEFB108E-201ENST00000524692 240 ntBASIC1.64□□□□□ -2.15
LIMA1Q9UHB6 MIR4422-201ENST00000581938 83 ntBASIC1.64□□□□□ -2.15
LIMA1Q9UHB6 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.64□□□□□ -2.15
LIMA1Q9UHB6 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.64□□□□□ -2.15
LIMA1Q9UHB6 RNU4-80P-201ENST00000363200 141 ntBASIC1.63□□□□□ -2.15
LIMA1Q9UHB6 Y_RNA.265-201ENST00000364677 108 ntBASIC1.63□□□□□ -2.15
LIMA1Q9UHB6 SNORD1A-201ENST00000364968 72 ntBASIC1.63□□□□□ -2.15
LIMA1Q9UHB6 MIR513A1-201ENST00000385138 129 ntBASIC1.63□□□□□ -2.15
LIMA1Q9UHB6 MIR1302-3-201ENST00000408128 138 ntBASIC1.63□□□□□ -2.15
LIMA1Q9UHB6 POLR2KP2-201ENST00000438155 177 ntBASIC1.63□□□□□ -2.15
LIMA1Q9UHB6 PGBD4P5-201ENST00000445958 426 ntBASIC1.63□□□□□ -2.15
LIMA1Q9UHB6 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC1.63□□□□□ -2.15
LIMA1Q9UHB6 SNORD127-201ENST00000458892 86 ntBASIC1.63□□□□□ -2.15
LIMA1Q9UHB6 Y_RNA.680-201ENST00000516441 93 ntBASIC1.63□□□□□ -2.15
LIMA1Q9UHB6 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.63□□□□□ -2.15
LIMA1Q9UHB6 AC012433.1-201ENST00000588916 398 ntBASIC1.63□□□□□ -2.15
LIMA1Q9UHB6 AC073349.3-201ENST00000617616 186 ntBASIC1.63□□□□□ -2.15
LIMA1Q9UHB6 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC1.62□□□□□ -2.15
LIMA1Q9UHB6 RNU4-13P-201ENST00000364019 141 ntBASIC1.62□□□□□ -2.15
LIMA1Q9UHB6 RNU6-702P-201ENST00000364982 107 ntBASIC1.62□□□□□ -2.15
LIMA1Q9UHB6 Y_RNA.562-201ENST00000384695 113 ntBASIC1.62□□□□□ -2.15
LIMA1Q9UHB6 Y_RNA.569-201ENST00000384749 103 ntBASIC1.62□□□□□ -2.15
LIMA1Q9UHB6 MIR517C-201ENST00000385103 95 ntBASIC1.62□□□□□ -2.15
LIMA1Q9UHB6 RNU1-78P-201ENST00000391248 165 ntBASIC1.62□□□□□ -2.15
LIMA1Q9UHB6 SNORA26.9-201ENST00000391322 122 ntBASIC1.62□□□□□ -2.15
LIMA1Q9UHB6 RPS4XP11-201ENST00000446897 772 ntBASIC1.62□□□□□ -2.15
LIMA1Q9UHB6 AC233266.1-201ENST00000454518 96 ntBASIC1.62□□□□□ -2.15
LIMA1Q9UHB6 SERF1AP1-201ENST00000514575 187 ntBASIC1.62□□□□□ -2.15
LIMA1Q9UHB6 RNA5SP61-201ENST00000516453 100 ntBASIC1.62□□□□□ -2.15
LIMA1Q9UHB6 RNU7-28P-201ENST00000516759 62 ntBASIC1.62□□□□□ -2.15
LIMA1Q9UHB6 AL358944.1-201ENST00000528537 144 ntBASIC1.62□□□□□ -2.15
LIMA1Q9UHB6 AC004832.4-201ENST00000608952 331 ntBASIC1.62□□□□□ -2.15
LIMA1Q9UHB6 AC242852.1-201ENST00000612151 96 ntBASIC1.62□□□□□ -2.15
LIMA1Q9UHB6 AL513423.1-201ENST00000621695 132 ntBASIC1.62□□□□□ -2.15
LIMA1Q9UHB6 AC244015.1-201ENST00000622301 99 ntBASIC1.62□□□□□ -2.15
LIMA1Q9UHB6 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC1.61□□□□□ -2.15
LIMA1Q9UHB6 MIR335-201ENST00000362173 94 ntBASIC1.61□□□□□ -2.15
LIMA1Q9UHB6 RNU1-42P-201ENST00000364033 160 ntBASIC1.61□□□□□ -2.15
LIMA1Q9UHB6 RNU6-326P-201ENST00000365480 107 ntBASIC1.61□□□□□ -2.15
LIMA1Q9UHB6 Y_RNA.556-201ENST00000384677 113 ntBASIC1.61□□□□□ -2.15
LIMA1Q9UHB6 RNU6-855P-201ENST00000410395 104 ntBASIC1.61□□□□□ -2.15
LIMA1Q9UHB6 RNU6-710P-201ENST00000410424 105 ntBASIC1.61□□□□□ -2.15
LIMA1Q9UHB6 AC079140.2-201ENST00000506193 142 ntBASIC1.61□□□□□ -2.15
LIMA1Q9UHB6 RNA5SP445-201ENST00000515889 115 ntBASIC1.61□□□□□ -2.15
LIMA1Q9UHB6 RNU6-191P-201ENST00000516295 94 ntBASIC1.61□□□□□ -2.15
LIMA1Q9UHB6 RNU2-31P-201ENST00000516954 155 ntBASIC1.61□□□□□ -2.15
LIMA1Q9UHB6 SCARNA24.2-201ENST00000516968 130 ntBASIC1.61□□□□□ -2.15
LIMA1Q9UHB6 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC1.61□□□□□ -2.15
LIMA1Q9UHB6 NAA50-211ENST00000630058 177 ntTSL 5 BASIC1.61□□□□□ -2.15
LIMA1Q9UHB6 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.6□□□□□ -2.15
LIMA1Q9UHB6 AL391987.6-201ENST00000305671 199 ntBASIC1.6□□□□□ -2.15
LIMA1Q9UHB6 Y_RNA.14-201ENST00000362415 103 ntBASIC1.6□□□□□ -2.15
LIMA1Q9UHB6 SNORD33-201ENST00000362761 85 ntBASIC1.6□□□□□ -2.15
LIMA1Q9UHB6 Y_RNA.288-201ENST00000364854 92 ntBASIC1.6□□□□□ -2.15
LIMA1Q9UHB6 RNA5SP259-201ENST00000365541 109 ntBASIC1.6□□□□□ -2.15
LIMA1Q9UHB6 RNA5SP482-201ENST00000391269 118 ntBASIC1.6□□□□□ -2.15
LIMA1Q9UHB6 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.6□□□□□ -2.15
LIMA1Q9UHB6 CYCSP49-201ENST00000420810 319 ntBASIC1.6□□□□□ -2.15
LIMA1Q9UHB6 AC245517.4-201ENST00000448601 281 ntBASIC1.6□□□□□ -2.15
LIMA1Q9UHB6 RNU6-1132P-201ENST00000459214 107 ntBASIC1.6□□□□□ -2.15
LIMA1Q9UHB6 AC091959.1-201ENST00000495857 238 ntBASIC1.6□□□□□ -2.15
LIMA1Q9UHB6 OR9P1P-201ENST00000496431 281 ntBASIC1.6□□□□□ -2.15
LIMA1Q9UHB6 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC1.6□□□□□ -2.15
LIMA1Q9UHB6 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.6□□□□□ -2.15
LIMA1Q9UHB6 AC019176.1-201ENST00000518519 225 ntBASIC1.6□□□□□ -2.15
LIMA1Q9UHB6 SUMO2P16-201ENST00000519475 264 ntBASIC1.6□□□□□ -2.15
LIMA1Q9UHB6 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.6□□□□□ -2.15
LIMA1Q9UHB6 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC1.6□□□□□ -2.15
LIMA1Q9UHB6 AC004817.2-201ENST00000561794 651 ntBASIC1.6□□□□□ -2.15
LIMA1Q9UHB6 AC062037.2-201ENST00000610137 73 ntBASIC1.6□□□□□ -2.15
LIMA1Q9UHB6 AC068700.1-201ENST00000565862 3754 ntBASIC1.59□□□□□ -2.15
LIMA1Q9UHB6 Y_RNA.307-201ENST00000365022 117 ntBASIC1.59□□□□□ -2.15
LIMA1Q9UHB6 Y_RNA.310-201ENST00000365063 113 ntBASIC1.59□□□□□ -2.15
LIMA1Q9UHB6 MIR660-201ENST00000385235 97 ntBASIC1.59□□□□□ -2.15
LIMA1Q9UHB6 CALM2P4-201ENST00000430810 426 ntBASIC1.59□□□□□ -2.15
LIMA1Q9UHB6 AC027119.1-201ENST00000440877 241 ntBASIC1.59□□□□□ -2.15
LIMA1Q9UHB6 RPS20P10-201ENST00000451209 253 ntBASIC1.59□□□□□ -2.15
LIMA1Q9UHB6 AL049830.1-201ENST00000468034 425 ntBASIC1.59□□□□□ -2.15
LIMA1Q9UHB6 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC1.59□□□□□ -2.15
LIMA1Q9UHB6 U2.14-201ENST00000615943 113 ntBASIC1.59□□□□□ -2.15
LIMA1Q9UHB6 SNORD3E-202ENST00000627253 216 ntBASIC1.59□□□□□ -2.15
LIMA1Q9UHB6 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC1.59□□□□□ -2.15
LIMA1Q9UHB6 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.59□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 397.9 ms