Protein–RNA interactions for Protein: Q9BRR0

ZKSCAN3, Zinc finger protein with KRAB and SCAN domains 3, humanhuman

Predictions only

Length 538 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZKSCAN3Q9BRR0 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC3.15□□□□□ -1.9
ZKSCAN3Q9BRR0 ZNF271P-202ENST00000465539 1970 ntBASIC3.15□□□□□ -1.91
ZKSCAN3Q9BRR0 Y_RNA.267-201ENST00000364679 109 ntBASIC3.15□□□□□ -1.91
ZKSCAN3Q9BRR0 SNORD61-201ENST00000384252 73 ntBASIC3.15□□□□□ -1.91
ZKSCAN3Q9BRR0 Y_RNA.510-201ENST00000384511 114 ntBASIC3.15□□□□□ -1.91
ZKSCAN3Q9BRR0 MIR515-2-201ENST00000384883 83 ntBASIC3.15□□□□□ -1.91
ZKSCAN3Q9BRR0 MIR515-1-201ENST00000384884 83 ntBASIC3.15□□□□□ -1.91
ZKSCAN3Q9BRR0 MIR634-201ENST00000385208 97 ntBASIC3.15□□□□□ -1.91
ZKSCAN3Q9BRR0 SNORD72-201ENST00000390994 80 ntBASIC3.15□□□□□ -1.91
ZKSCAN3Q9BRR0 RNU1-131P-201ENST00000458943 161 ntBASIC3.15□□□□□ -1.91
ZKSCAN3Q9BRR0 Y_RNA.651-201ENST00000459380 103 ntBASIC3.15□□□□□ -1.91
ZKSCAN3Q9BRR0 RN7SL636P-201ENST00000497504 294 ntBASIC3.15□□□□□ -1.91
ZKSCAN3Q9BRR0 AC096725.1-201ENST00000514266 313 ntBASIC3.15□□□□□ -1.91
ZKSCAN3Q9BRR0 SNORA9.3-201ENST00000516383 129 ntBASIC3.15□□□□□ -1.91
ZKSCAN3Q9BRR0 MIR3613-201ENST00000579844 87 ntBASIC3.15□□□□□ -1.91
ZKSCAN3Q9BRR0 AC025166.1-201ENST00000612411 163 ntBASIC3.15□□□□□ -1.91
ZKSCAN3Q9BRR0 UGP2-230ENST00000626380 276 ntTSL 5 BASIC3.15□□□□□ -1.91
ZKSCAN3Q9BRR0 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.14□□□□□ -1.91
ZKSCAN3Q9BRR0 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC3.14□□□□□ -1.91
ZKSCAN3Q9BRR0 SNORA25B-201ENST00000365507 128 ntBASIC3.14□□□□□ -1.91
ZKSCAN3Q9BRR0 HIST1H2APS3-201ENST00000403259 134 ntBASIC3.14□□□□□ -1.91
ZKSCAN3Q9BRR0 AL590004.2-201ENST00000404787 371 ntBASIC3.14□□□□□ -1.91
ZKSCAN3Q9BRR0 AL021397.1-201ENST00000451806 248 ntBASIC3.14□□□□□ -1.91
ZKSCAN3Q9BRR0 AL109933.2-201ENST00000452651 260 ntBASIC3.14□□□□□ -1.91
ZKSCAN3Q9BRR0 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC3.14□□□□□ -1.91
ZKSCAN3Q9BRR0 RNU7-94P-201ENST00000459576 63 ntBASIC3.14□□□□□ -1.91
ZKSCAN3Q9BRR0 RNU6-1270P-201ENST00000517128 108 ntBASIC3.14□□□□□ -1.91
ZKSCAN3Q9BRR0 MIR4635-201ENST00000583759 79 ntBASIC3.14□□□□□ -1.91
ZKSCAN3Q9BRR0 MIR4506-201ENST00000584693 77 ntBASIC3.14□□□□□ -1.91
ZKSCAN3Q9BRR0 MIR6852-201ENST00000621699 66 ntBASIC3.14□□□□□ -1.91
ZKSCAN3Q9BRR0 SCARNA15.3-201ENST00000626315 122 ntBASIC3.14□□□□□ -1.91
ZKSCAN3Q9BRR0 SCARNA4.1-201ENST00000628597 123 ntBASIC3.14□□□□□ -1.91
ZKSCAN3Q9BRR0 U6.108-201ENST00000637764 58 ntBASIC3.14□□□□□ -1.91
ZKSCAN3Q9BRR0 MTND5P32-201ENST00000560711 1802 ntBASIC3.14□□□□□ -1.91
ZKSCAN3Q9BRR0 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.13□□□□□ -1.91
ZKSCAN3Q9BRR0 MIR126-201ENST00000362291 85 ntBASIC3.13□□□□□ -1.91
ZKSCAN3Q9BRR0 RNU6-880P-201ENST00000384526 107 ntBASIC3.13□□□□□ -1.91
ZKSCAN3Q9BRR0 RNA5SP323-201ENST00000391094 133 ntBASIC3.13□□□□□ -1.91
ZKSCAN3Q9BRR0 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC3.13□□□□□ -1.91
ZKSCAN3Q9BRR0 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC3.13□□□□□ -1.91
ZKSCAN3Q9BRR0 ATP5J2P3-201ENST00000451550 258 ntBASIC3.13□□□□□ -1.91
ZKSCAN3Q9BRR0 RNA5SP236-201ENST00000516169 116 ntBASIC3.13□□□□□ -1.91
ZKSCAN3Q9BRR0 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.13□□□□□ -1.91
ZKSCAN3Q9BRR0 MIR4679-2-201ENST00000578358 77 ntBASIC3.13□□□□□ -1.91
ZKSCAN3Q9BRR0 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC3.13□□□□□ -1.91
ZKSCAN3Q9BRR0 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
ZKSCAN3Q9BRR0 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC3.13□□□□□ -1.91
ZKSCAN3Q9BRR0 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
ZKSCAN3Q9BRR0 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
ZKSCAN3Q9BRR0 Y_RNA.35-201ENST00000362601 101 ntBASIC3.12□□□□□ -1.91
ZKSCAN3Q9BRR0 RNU6-461P-201ENST00000364195 107 ntBASIC3.12□□□□□ -1.91
ZKSCAN3Q9BRR0 RNU6-160P-201ENST00000384591 107 ntBASIC3.12□□□□□ -1.91
ZKSCAN3Q9BRR0 MIR9-1-201ENST00000385198 89 ntBASIC3.12□□□□□ -1.91
ZKSCAN3Q9BRR0 MIR1289-1-201ENST00000408836 144 ntBASIC3.12□□□□□ -1.91
ZKSCAN3Q9BRR0 RNA5SP184-201ENST00000411071 108 ntBASIC3.12□□□□□ -1.91
ZKSCAN3Q9BRR0 SNRPGP13-201ENST00000442212 177 ntBASIC3.12□□□□□ -1.91
ZKSCAN3Q9BRR0 Y_RNA.649-201ENST00000459077 103 ntBASIC3.12□□□□□ -1.91
ZKSCAN3Q9BRR0 RN7SKP282-201ENST00000516824 299 ntBASIC3.12□□□□□ -1.91
ZKSCAN3Q9BRR0 AC024995.1-201ENST00000523014 93 ntBASIC3.12□□□□□ -1.91
ZKSCAN3Q9BRR0 AP002004.2-201ENST00000531656 154 ntBASIC3.12□□□□□ -1.91
ZKSCAN3Q9BRR0 AL591926.4-201ENST00000616895 298 ntBASIC3.12□□□□□ -1.91
ZKSCAN3Q9BRR0 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
ZKSCAN3Q9BRR0 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC3.12□□□□□ -1.91
ZKSCAN3Q9BRR0 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC3.12□□□□□ -1.91
ZKSCAN3Q9BRR0 RNU6-859P-201ENST00000362728 107 ntBASIC3.11□□□□□ -1.91
ZKSCAN3Q9BRR0 RNU6-1164P-201ENST00000364428 107 ntBASIC3.11□□□□□ -1.91
ZKSCAN3Q9BRR0 RNU6-147P-201ENST00000383983 107 ntBASIC3.11□□□□□ -1.91
ZKSCAN3Q9BRR0 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC3.11□□□□□ -1.91
ZKSCAN3Q9BRR0 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC3.11□□□□□ -1.91
ZKSCAN3Q9BRR0 RNU6-693P-201ENST00000516134 107 ntBASIC3.11□□□□□ -1.91
ZKSCAN3Q9BRR0 Y_RNA.666-201ENST00000516187 112 ntBASIC3.11□□□□□ -1.91
ZKSCAN3Q9BRR0 RNU6-113P-201ENST00000516653 101 ntBASIC3.11□□□□□ -1.91
ZKSCAN3Q9BRR0 IGHVIII-67-2-201ENST00000519849 88 ntBASIC3.11□□□□□ -1.91
ZKSCAN3Q9BRR0 MAPK10-266ENST00000641066 6555 ntBASIC3.1□□□□□ -1.91
ZKSCAN3Q9BRR0 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
ZKSCAN3Q9BRR0 RNU6-1298P-201ENST00000362456 101 ntBASIC3.1□□□□□ -1.91
ZKSCAN3Q9BRR0 RNA5SP125-201ENST00000364843 120 ntBASIC3.1□□□□□ -1.91
ZKSCAN3Q9BRR0 SNORA8-201ENST00000384574 139 ntBASIC3.1□□□□□ -1.91
ZKSCAN3Q9BRR0 MIR196B-201ENST00000384852 84 ntBASIC3.1□□□□□ -1.91
ZKSCAN3Q9BRR0 MIR802-201ENST00000390235 94 ntBASIC3.1□□□□□ -1.91
ZKSCAN3Q9BRR0 RN7SKP123-201ENST00000410732 291 ntBASIC3.1□□□□□ -1.91
ZKSCAN3Q9BRR0 FTH1P12-201ENST00000432137 551 ntBASIC3.1□□□□□ -1.91
ZKSCAN3Q9BRR0 AL049830.1-201ENST00000468034 425 ntBASIC3.1□□□□□ -1.91
ZKSCAN3Q9BRR0 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC3.1□□□□□ -1.91
ZKSCAN3Q9BRR0 AC007536.1-201ENST00000533382 349 ntBASIC3.1□□□□□ -1.91
ZKSCAN3Q9BRR0 AC006023.1-201ENST00000603944 259 ntBASIC3.1□□□□□ -1.91
ZKSCAN3Q9BRR0 AC022217.4-201ENST00000604389 163 ntBASIC3.1□□□□□ -1.91
ZKSCAN3Q9BRR0 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC3.1□□□□□ -1.91
ZKSCAN3Q9BRR0 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC3.1□□□□□ -1.91
ZKSCAN3Q9BRR0 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
ZKSCAN3Q9BRR0 MTND5P18-201ENST00000445624 1801 ntBASIC3.09□□□□□ -1.91
ZKSCAN3Q9BRR0 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC3.09□□□□□ -1.91
ZKSCAN3Q9BRR0 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC3.09□□□□□ -1.91
ZKSCAN3Q9BRR0 SNORA1B-201ENST00000362535 133 ntBASIC3.09□□□□□ -1.91
ZKSCAN3Q9BRR0 SNORD114-6-201ENST00000364393 72 ntBASIC3.09□□□□□ -1.91
ZKSCAN3Q9BRR0 MIR522-201ENST00000385071 87 ntBASIC3.09□□□□□ -1.91
ZKSCAN3Q9BRR0 SNORA26.7-201ENST00000391288 122 ntBASIC3.09□□□□□ -1.91
ZKSCAN3Q9BRR0 AL117342.1-201ENST00000404861 406 ntBASIC3.09□□□□□ -1.91
ZKSCAN3Q9BRR0 CST2P1-201ENST00000425770 87 ntBASIC3.09□□□□□ -1.91
ZKSCAN3Q9BRR0 AC104332.2-201ENST00000429959 156 ntBASIC3.09□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 215.3 ms