Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 RNU6-937P-201ENST00000384325 106 ntBASIC1.02□□□□□ -2.25
VPS39Q96JC1 MIR520G-201ENST00000385064 90 ntBASIC1.02□□□□□ -2.25
VPS39Q96JC1 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.02□□□□□ -2.25
VPS39Q96JC1 AL590004.1-201ENST00000405321 300 ntBASIC1.02□□□□□ -2.25
VPS39Q96JC1 RNU6-130P-201ENST00000411112 103 ntBASIC1.02□□□□□ -2.25
VPS39Q96JC1 AC048334.1-201ENST00000477975 159 ntBASIC1.02□□□□□ -2.25
VPS39Q96JC1 AC011604.1-201ENST00000545978 196 ntBASIC1.02□□□□□ -2.25
VPS39Q96JC1 DEFB117-201ENST00000602356 141 ntBASIC1.02□□□□□ -2.25
VPS39Q96JC1 AL080274.1-201ENST00000605565 220 ntBASIC1.02□□□□□ -2.25
VPS39Q96JC1 LARP7P1-201ENST00000605576 316 ntBASIC1.02□□□□□ -2.25
VPS39Q96JC1 AC103810.9-201ENST00000606688 112 ntBASIC1.02□□□□□ -2.25
VPS39Q96JC1 PART1_1.1-201ENST00000611761 217 ntBASIC1.02□□□□□ -2.25
VPS39Q96JC1 AC091895.1-201ENST00000624494 256 ntBASIC1.02□□□□□ -2.25
VPS39Q96JC1 SNORD114-7-201ENST00000362520 77 ntBASIC1.01□□□□□ -2.25
VPS39Q96JC1 Y_RNA.39-201ENST00000362620 98 ntBASIC1.01□□□□□ -2.25
VPS39Q96JC1 Y_RNA.143-201ENST00000363520 106 ntBASIC1.01□□□□□ -2.25
VPS39Q96JC1 Y_RNA.197-201ENST00000364004 102 ntBASIC1.01□□□□□ -2.25
VPS39Q96JC1 Y_RNA.394-201ENST00000383942 103 ntBASIC1.01□□□□□ -2.25
VPS39Q96JC1 MIR653-201ENST00000385279 96 ntBASIC1.01□□□□□ -2.25
VPS39Q96JC1 RNU6-910P-201ENST00000390844 107 ntBASIC1.01□□□□□ -2.25
VPS39Q96JC1 RNA5SP482-201ENST00000391269 118 ntBASIC1.01□□□□□ -2.25
VPS39Q96JC1 RNU6-1054P-201ENST00000411293 104 ntBASIC1.01□□□□□ -2.25
VPS39Q96JC1 RPS20P10-201ENST00000451209 253 ntBASIC1.01□□□□□ -2.25
VPS39Q96JC1 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC1.01□□□□□ -2.25
VPS39Q96JC1 AC114811.1-201ENST00000507207 168 ntBASIC1.01□□□□□ -2.25
VPS39Q96JC1 RNU7-28P-201ENST00000516759 62 ntBASIC1.01□□□□□ -2.25
VPS39Q96JC1 RN7SKP295-201ENST00000517264 153 ntBASIC1.01□□□□□ -2.25
VPS39Q96JC1 MIR4423-201ENST00000580922 80 ntBASIC1.01□□□□□ -2.25
VPS39Q96JC1 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.01□□□□□ -2.25
VPS39Q96JC1 GHRLOS.1-201ENST00000610995 70 ntBASIC1.01□□□□□ -2.25
VPS39Q96JC1 uc_338.22-201ENST00000622722 187 ntBASIC1.01□□□□□ -2.25
VPS39Q96JC1 AL008636.1-201ENST00000625038 1018 ntBASIC1.01□□□□□ -2.25
VPS39Q96JC1 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1□□□□□ -2.25
VPS39Q96JC1 RNU4-38P-201ENST00000364472 129 ntBASIC1□□□□□ -2.25
VPS39Q96JC1 SNORD12-201ENST00000391002 90 ntBASIC1□□□□□ -2.25
VPS39Q96JC1 MCFD2P1-201ENST00000417812 300 ntBASIC1□□□□□ -2.25
VPS39Q96JC1 MLLT10P1-201ENST00000418346 262 ntBASIC1□□□□□ -2.25
VPS39Q96JC1 POLR2J4-204ENST00000418424 324 ntBASIC1□□□□□ -2.25
VPS39Q96JC1 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC1□□□□□ -2.25
VPS39Q96JC1 SUMO1P2-201ENST00000452524 304 ntBASIC1□□□□□ -2.25
VPS39Q96JC1 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1□□□□□ -2.25
VPS39Q96JC1 FAM106DP-201ENST00000586416 501 ntBASIC1□□□□□ -2.25
VPS39Q96JC1 AL020996.3-201ENST00000606617 222 ntBASIC1□□□□□ -2.25
VPS39Q96JC1 AC010205.1-201ENST00000616668 449 ntBASIC1□□□□□ -2.25
VPS39Q96JC1 MTND4P29-201ENST00000503122 1372 ntBASIC0.99□□□□□ -2.25
VPS39Q96JC1 Y_RNA.230-201ENST00000364348 109 ntBASIC0.99□□□□□ -2.25
VPS39Q96JC1 Y_RNA.286-201ENST00000364813 102 ntBASIC0.99□□□□□ -2.25
VPS39Q96JC1 Y_RNA.331-201ENST00000365267 102 ntBASIC0.99□□□□□ -2.25
VPS39Q96JC1 RNU6-53P-201ENST00000365367 106 ntBASIC0.99□□□□□ -2.25
VPS39Q96JC1 RNU6-163P-201ENST00000384396 106 ntBASIC0.99□□□□□ -2.25
VPS39Q96JC1 RNU6ATAC8P-201ENST00000408460 126 ntBASIC0.99□□□□□ -2.25
VPS39Q96JC1 MTND4LP11-201ENST00000422184 280 ntBASIC0.99□□□□□ -2.25
VPS39Q96JC1 snoU13.25-201ENST00000458945 104 ntBASIC0.99□□□□□ -2.25
VPS39Q96JC1 SNORA70.12-201ENST00000516084 153 ntBASIC0.99□□□□□ -2.25
VPS39Q96JC1 RNU6-976P-201ENST00000516086 111 ntBASIC0.99□□□□□ -2.25
VPS39Q96JC1 RNU6-1046P-201ENST00000516538 107 ntBASIC0.99□□□□□ -2.25
VPS39Q96JC1 AC090049.2-201ENST00000550377 109 ntBASIC0.99□□□□□ -2.25
VPS39Q96JC1 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC0.99□□□□□ -2.25
VPS39Q96JC1 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC0.99□□□□□ -2.25
VPS39Q96JC1 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC0.99□□□□□ -2.25
VPS39Q96JC1 Y_RNA.363-201ENST00000365529 113 ntBASIC0.98□□□□□ -2.25
VPS39Q96JC1 Y_RNA.509-201ENST00000384506 99 ntBASIC0.98□□□□□ -2.25
VPS39Q96JC1 MIR562-201ENST00000384894 95 ntBASIC0.98□□□□□ -2.25
VPS39Q96JC1 RNU11-5P-201ENST00000391216 129 ntBASIC0.98□□□□□ -2.25
VPS39Q96JC1 RNU6-855P-201ENST00000410395 104 ntBASIC0.98□□□□□ -2.25
VPS39Q96JC1 AC063976.4-201ENST00000421971 163 ntBASIC0.98□□□□□ -2.25
VPS39Q96JC1 SNORA40.14-201ENST00000516543 86 ntBASIC0.98□□□□□ -2.25
VPS39Q96JC1 RNU7-110P-201ENST00000516891 62 ntBASIC0.98□□□□□ -2.25
VPS39Q96JC1 AL358944.1-201ENST00000528537 144 ntBASIC0.98□□□□□ -2.25
VPS39Q96JC1 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC0.98□□□□□ -2.25
VPS39Q96JC1 RPS29P30-201ENST00000600975 111 ntBASIC0.98□□□□□ -2.25
VPS39Q96JC1 AC120024.3-201ENST00000603167 156 ntBASIC0.98□□□□□ -2.25
VPS39Q96JC1 AC005972.2-201ENST00000604690 348 ntBASIC0.98□□□□□ -2.25
VPS39Q96JC1 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC0.98□□□□□ -2.25
VPS39Q96JC1 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC0.98□□□□□ -2.25
VPS39Q96JC1 Y_RNA.253-201ENST00000364562 112 ntBASIC0.97□□□□□ -2.25
VPS39Q96JC1 RNU6-1187P-201ENST00000364771 110 ntBASIC0.97□□□□□ -2.25
VPS39Q96JC1 SNORD114-24-201ENST00000365029 72 ntBASIC0.97□□□□□ -2.25
VPS39Q96JC1 Y_RNA.310-201ENST00000365063 113 ntBASIC0.97□□□□□ -2.25
VPS39Q96JC1 RNU1-36P-201ENST00000365130 165 ntBASIC0.97□□□□□ -2.25
VPS39Q96JC1 RNU1-115P-201ENST00000365329 160 ntBASIC0.97□□□□□ -2.25
VPS39Q96JC1 SNORA2.2-201ENST00000365473 135 ntBASIC0.97□□□□□ -2.25
VPS39Q96JC1 Y_RNA.471-201ENST00000384312 102 ntBASIC0.97□□□□□ -2.25
VPS39Q96JC1 Y_RNA.645-201ENST00000391229 102 ntBASIC0.97□□□□□ -2.25
VPS39Q96JC1 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC0.97□□□□□ -2.25
VPS39Q96JC1 AL390729.2-201ENST00000416137 156 ntBASIC0.97□□□□□ -2.25
VPS39Q96JC1 SNRPGP10-201ENST00000432323 225 ntBASIC0.97□□□□□ -2.25
VPS39Q96JC1 AC245047.7-201ENST00000440265 293 ntBASIC0.97□□□□□ -2.25
VPS39Q96JC1 MTND4P19-201ENST00000446659 478 ntBASIC0.97□□□□□ -2.25
VPS39Q96JC1 AC005042.3-201ENST00000453230 174 ntBASIC0.97□□□□□ -2.25
VPS39Q96JC1 AC040926.1-201ENST00000530195 238 ntBASIC0.97□□□□□ -2.25
VPS39Q96JC1 MIR4781-201ENST00000585250 76 ntBASIC0.97□□□□□ -2.25
VPS39Q96JC1 Y_RNA.772-201ENST00000606692 102 ntBASIC0.97□□□□□ -2.25
VPS39Q96JC1 AL096861.1-201ENST00000610899 123 ntBASIC0.97□□□□□ -2.25
VPS39Q96JC1 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.96□□□□□ -2.26
VPS39Q96JC1 RNU6-833P-201ENST00000363486 107 ntBASIC0.96□□□□□ -2.26
VPS39Q96JC1 RNU6-1048P-201ENST00000364054 107 ntBASIC0.96□□□□□ -2.26
VPS39Q96JC1 RNU6-450P-201ENST00000364654 107 ntBASIC0.96□□□□□ -2.26
VPS39Q96JC1 SNORD42.2-201ENST00000365570 69 ntBASIC0.96□□□□□ -2.26
VPS39Q96JC1 RNU6-474P-201ENST00000384243 107 ntBASIC0.96□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 198.6 ms