Protein–RNA interactions for Protein: Q95604

HLA-C, HLA class I histocompatibility antigen, Cw-17 alpha chain, humanhuman

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-CQ95604 MFSD8-233ENST00000641482 4860 ntBASIC3.66□□□□□ -1.82
HLA-CQ95604 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3.66□□□□□ -1.82
HLA-CQ95604 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.65□□□□□ -1.82
HLA-CQ95604 AC091152.2-201ENST00000591628 2569 ntBASIC3.65□□□□□ -1.82
HLA-CQ95604 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
HLA-CQ95604 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC3.65□□□□□ -1.82
HLA-CQ95604 MIR494-201ENST00000349529 81 ntBASIC3.65□□□□□ -1.83
HLA-CQ95604 RNU6-363P-201ENST00000362895 105 ntBASIC3.65□□□□□ -1.83
HLA-CQ95604 CD24P4-201ENST00000382840 243 ntBASIC3.65□□□□□ -1.83
HLA-CQ95604 SNORA44-201ENST00000384584 132 ntBASIC3.65□□□□□ -1.83
HLA-CQ95604 RNA5SP144-201ENST00000410846 116 ntBASIC3.65□□□□□ -1.83
HLA-CQ95604 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC3.65□□□□□ -1.83
HLA-CQ95604 AC087741.2-201ENST00000619415 172 ntBASIC3.65□□□□□ -1.83
HLA-CQ95604 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
HLA-CQ95604 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
HLA-CQ95604 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC3.64□□□□□ -1.83
HLA-CQ95604 SNORA27-201ENST00000384323 126 ntBASIC3.64□□□□□ -1.83
HLA-CQ95604 MIR591-201ENST00000385290 95 ntBASIC3.64□□□□□ -1.83
HLA-CQ95604 RN7SKP200-201ENST00000410564 320 ntBASIC3.64□□□□□ -1.83
HLA-CQ95604 AC113410.1-201ENST00000505029 247 ntBASIC3.64□□□□□ -1.83
HLA-CQ95604 SNORA28-201ENST00000606769 126 ntBASIC3.64□□□□□ -1.83
HLA-CQ95604 AC027279.3-201ENST00000625055 122 ntBASIC3.64□□□□□ -1.83
HLA-CQ95604 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
HLA-CQ95604 AC008264.2-201ENST00000610193 3731 ntBASIC3.64□□□□□ -1.83
HLA-CQ95604 MAPK10-253ENST00000641010 4072 ntBASIC3.64□□□□□ -1.83
HLA-CQ95604 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC3.63□□□□□ -1.83
HLA-CQ95604 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC3.63□□□□□ -1.83
HLA-CQ95604 SNORD115-34-201ENST00000362441 82 ntBASIC3.63□□□□□ -1.83
HLA-CQ95604 SNORD115-12-201ENST00000362583 82 ntBASIC3.63□□□□□ -1.83
HLA-CQ95604 SNORD115-29-201ENST00000362834 82 ntBASIC3.63□□□□□ -1.83
HLA-CQ95604 SNORD115-9-201ENST00000362912 82 ntBASIC3.63□□□□□ -1.83
HLA-CQ95604 SNORD115-21-201ENST00000362963 81 ntBASIC3.63□□□□□ -1.83
HLA-CQ95604 SNORD115-14-201ENST00000363090 81 ntBASIC3.63□□□□□ -1.83
HLA-CQ95604 SNORD115-13-201ENST00000363358 82 ntBASIC3.63□□□□□ -1.83
HLA-CQ95604 SNORD115-41-201ENST00000363608 82 ntBASIC3.63□□□□□ -1.83
HLA-CQ95604 SNORD115-11-201ENST00000363616 82 ntBASIC3.63□□□□□ -1.83
HLA-CQ95604 SNORD115-5-201ENST00000363633 82 ntBASIC3.63□□□□□ -1.83
HLA-CQ95604 SNORD115-39-201ENST00000363694 82 ntBASIC3.63□□□□□ -1.83
HLA-CQ95604 SNORD115-4-201ENST00000363810 82 ntBASIC3.63□□□□□ -1.83
HLA-CQ95604 SNORD115-16-201ENST00000363887 82 ntBASIC3.63□□□□□ -1.83
HLA-CQ95604 SNORD115-6-201ENST00000363942 82 ntBASIC3.63□□□□□ -1.83
HLA-CQ95604 SNORD115-42-201ENST00000364273 82 ntBASIC3.63□□□□□ -1.83
HLA-CQ95604 SNORD114-6-201ENST00000364393 72 ntBASIC3.63□□□□□ -1.83
HLA-CQ95604 SNORD115-15-201ENST00000364809 81 ntBASIC3.63□□□□□ -1.83
HLA-CQ95604 SNORD115-1-201ENST00000364961 82 ntBASIC3.63□□□□□ -1.83
HLA-CQ95604 SNORD115-26-201ENST00000365067 82 ntBASIC3.63□□□□□ -1.83
HLA-CQ95604 SNORD115-10-201ENST00000365073 81 ntBASIC3.63□□□□□ -1.83
HLA-CQ95604 SNORA4.2-201ENST00000365313 147 ntBASIC3.63□□□□□ -1.83
HLA-CQ95604 SNORD115-43-201ENST00000365503 82 ntBASIC3.63□□□□□ -1.83
HLA-CQ95604 SNORA25B-201ENST00000365507 128 ntBASIC3.63□□□□□ -1.83
HLA-CQ95604 SNORD115-36-201ENST00000365629 82 ntBASIC3.63□□□□□ -1.83
HLA-CQ95604 RNU1-101P-201ENST00000391171 127 ntBASIC3.63□□□□□ -1.83
HLA-CQ95604 Y_RNA.593-201ENST00000410292 98 ntBASIC3.63□□□□□ -1.83
HLA-CQ95604 RNU6-733P-201ENST00000410759 104 ntBASIC3.63□□□□□ -1.83
HLA-CQ95604 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC3.63□□□□□ -1.83
HLA-CQ95604 AC004941.2-201ENST00000427009 228 ntBASIC3.63□□□□□ -1.83
HLA-CQ95604 AC245047.3-201ENST00000429428 127 ntBASIC3.63□□□□□ -1.83
HLA-CQ95604 RPS26P15-201ENST00000488067 348 ntBASIC3.63□□□□□ -1.83
HLA-CQ95604 RNU6-998P-201ENST00000515894 101 ntBASIC3.63□□□□□ -1.83
HLA-CQ95604 CYP4A43P-201ENST00000568156 121 ntBASIC3.63□□□□□ -1.83
HLA-CQ95604 MIR3618-201ENST00000580330 88 ntBASIC3.63□□□□□ -1.83
HLA-CQ95604 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
HLA-CQ95604 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC3.63□□□□□ -1.83
HLA-CQ95604 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.63□□□□□ -1.83
HLA-CQ95604 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC3.62□□□□□ -1.83
HLA-CQ95604 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC3.62□□□□□ -1.83
HLA-CQ95604 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.62□□□□□ -1.83
HLA-CQ95604 Y_RNA.17-201ENST00000362433 111 ntBASIC3.62□□□□□ -1.83
HLA-CQ95604 RNU6-409P-201ENST00000384114 104 ntBASIC3.62□□□□□ -1.83
HLA-CQ95604 AC002984.1-201ENST00000591692 448 ntBASIC3.62□□□□□ -1.83
HLA-CQ95604 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.62□□□□□ -1.83
HLA-CQ95604 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC3.62□□□□□ -1.83
HLA-CQ95604 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
HLA-CQ95604 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC3.62□□□□□ -1.83
HLA-CQ95604 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
HLA-CQ95604 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
HLA-CQ95604 RNY1P10-201ENST00000363268 113 ntBASIC3.61□□□□□ -1.83
HLA-CQ95604 RNU6-832P-201ENST00000363319 107 ntBASIC3.61□□□□□ -1.83
HLA-CQ95604 Y_RNA.290-201ENST00000364879 114 ntBASIC3.61□□□□□ -1.83
HLA-CQ95604 RNU6-424P-201ENST00000384367 105 ntBASIC3.61□□□□□ -1.83
HLA-CQ95604 Y_RNA.531-201ENST00000384589 121 ntBASIC3.61□□□□□ -1.83
HLA-CQ95604 SNORA48.8-201ENST00000391324 134 ntBASIC3.61□□□□□ -1.83
HLA-CQ95604 SNORA11.4-201ENST00000408823 129 ntBASIC3.61□□□□□ -1.83
HLA-CQ95604 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC3.61□□□□□ -1.83
HLA-CQ95604 AC004812.1-201ENST00000540773 146 ntBASIC3.61□□□□□ -1.83
HLA-CQ95604 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC3.61□□□□□ -1.83
HLA-CQ95604 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
HLA-CQ95604 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
HLA-CQ95604 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
HLA-CQ95604 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
HLA-CQ95604 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
HLA-CQ95604 Y_RNA.360-201ENST00000365512 102 ntBASIC3.6□□□□□ -1.83
HLA-CQ95604 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
HLA-CQ95604 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.6□□□□□ -1.83
HLA-CQ95604 AL449363.1-201ENST00000617815 186 ntBASIC3.6□□□□□ -1.83
HLA-CQ95604 U4atac.1-201ENST00000618345 95 ntBASIC3.6□□□□□ -1.83
HLA-CQ95604 AC021613.1-201ENST00000623880 111 ntBASIC3.6□□□□□ -1.83
HLA-CQ95604 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
HLA-CQ95604 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
HLA-CQ95604 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.6□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 103.5 ms