Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 LINC01399-202ENST00000458450 244 ntBASIC1.15□□□□□ -2.23
ZNF540Q8NDQ6 SNORD65B-201ENST00000459126 73 ntBASIC1.15□□□□□ -2.23
ZNF540Q8NDQ6 AC098869.1-201ENST00000481627 292 ntBASIC1.15□□□□□ -2.23
ZNF540Q8NDQ6 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC1.15□□□□□ -2.23
ZNF540Q8NDQ6 AC027335.2-201ENST00000624030 375 ntBASIC1.15□□□□□ -2.23
ZNF540Q8NDQ6 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.15□□□□□ -2.23
ZNF540Q8NDQ6 Y_RNA.183-201ENST00000363882 113 ntBASIC1.14□□□□□ -2.23
ZNF540Q8NDQ6 Y_RNA.210-201ENST00000364161 110 ntBASIC1.14□□□□□ -2.23
ZNF540Q8NDQ6 Y_RNA.222-201ENST00000364264 102 ntBASIC1.14□□□□□ -2.23
ZNF540Q8NDQ6 Y_RNA.230-201ENST00000364348 109 ntBASIC1.14□□□□□ -2.23
ZNF540Q8NDQ6 RNU6-1240P-201ENST00000365155 104 ntBASIC1.14□□□□□ -2.23
ZNF540Q8NDQ6 RNU6-1175P-201ENST00000365200 107 ntBASIC1.14□□□□□ -2.23
ZNF540Q8NDQ6 RNU6-117P-201ENST00000365415 107 ntBASIC1.14□□□□□ -2.23
ZNF540Q8NDQ6 Y_RNA.380-201ENST00000365663 111 ntBASIC1.14□□□□□ -2.23
ZNF540Q8NDQ6 Y_RNA.424-201ENST00000384063 103 ntBASIC1.14□□□□□ -2.23
ZNF540Q8NDQ6 Y_RNA.462-201ENST00000384268 102 ntBASIC1.14□□□□□ -2.23
ZNF540Q8NDQ6 Y_RNA.512-201ENST00000384518 102 ntBASIC1.14□□□□□ -2.23
ZNF540Q8NDQ6 RNU6-1031P-201ENST00000384773 107 ntBASIC1.14□□□□□ -2.23
ZNF540Q8NDQ6 MIR215-201ENST00000384858 110 ntBASIC1.14□□□□□ -2.23
ZNF540Q8NDQ6 MIR222-201ENST00000384992 110 ntBASIC1.14□□□□□ -2.23
ZNF540Q8NDQ6 AL590004.1-201ENST00000405321 300 ntBASIC1.14□□□□□ -2.23
ZNF540Q8NDQ6 AL358176.2-201ENST00000425769 204 ntBASIC1.14□□□□□ -2.23
ZNF540Q8NDQ6 AL606517.2-201ENST00000442855 241 ntBASIC1.14□□□□□ -2.23
ZNF540Q8NDQ6 RPS27P1-201ENST00000450552 247 ntBASIC1.14□□□□□ -2.23
ZNF540Q8NDQ6 HSPE1P13-201ENST00000451143 297 ntBASIC1.14□□□□□ -2.23
ZNF540Q8NDQ6 RNU1-123P-201ENST00000458950 160 ntBASIC1.14□□□□□ -2.23
ZNF540Q8NDQ6 UBL5P1-201ENST00000507979 193 ntBASIC1.14□□□□□ -2.23
ZNF540Q8NDQ6 MRPS35P2-201ENST00000508242 191 ntBASIC1.14□□□□□ -2.23
ZNF540Q8NDQ6 RNU6-436P-201ENST00000516171 114 ntBASIC1.14□□□□□ -2.23
ZNF540Q8NDQ6 RNU6-107P-201ENST00000516643 102 ntBASIC1.14□□□□□ -2.23
ZNF540Q8NDQ6 Y_RNA.720-201ENST00000517166 92 ntBASIC1.14□□□□□ -2.23
ZNF540Q8NDQ6 Y_RNA.721-201ENST00000517207 102 ntBASIC1.14□□□□□ -2.23
ZNF540Q8NDQ6 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC1.14□□□□□ -2.23
ZNF540Q8NDQ6 AC005176.2-201ENST00000596933 147 ntBASIC1.14□□□□□ -2.23
ZNF540Q8NDQ6 RPS29P30-201ENST00000600975 111 ntBASIC1.14□□□□□ -2.23
ZNF540Q8NDQ6 AL929325.1-201ENST00000603096 117 ntBASIC1.14□□□□□ -2.23
ZNF540Q8NDQ6 AC021506.2-201ENST00000612354 169 ntBASIC1.14□□□□□ -2.23
ZNF540Q8NDQ6 AC127459.3-201ENST00000624328 466 ntBASIC1.14□□□□□ -2.23
ZNF540Q8NDQ6 AC091895.1-201ENST00000624494 256 ntBASIC1.14□□□□□ -2.23
ZNF540Q8NDQ6 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.14□□□□□ -2.23
ZNF540Q8NDQ6 AL391516.1-201ENST00000554380 2449 ntBASIC1.14□□□□□ -2.23
ZNF540Q8NDQ6 SNORA27.1-201ENST00000362604 124 ntBASIC1.13□□□□□ -2.23
ZNF540Q8NDQ6 Y_RNA.64-201ENST00000362845 102 ntBASIC1.13□□□□□ -2.23
ZNF540Q8NDQ6 Y_RNA.133-201ENST00000363428 110 ntBASIC1.13□□□□□ -2.23
ZNF540Q8NDQ6 Y_RNA.145-201ENST00000363527 102 ntBASIC1.13□□□□□ -2.23
ZNF540Q8NDQ6 Y_RNA.172-201ENST00000363765 102 ntBASIC1.13□□□□□ -2.23
ZNF540Q8NDQ6 Y_RNA.418-201ENST00000384029 102 ntBASIC1.13□□□□□ -2.23
ZNF540Q8NDQ6 Y_RNA.439-201ENST00000384119 94 ntBASIC1.13□□□□□ -2.23
ZNF540Q8NDQ6 Y_RNA.526-201ENST00000384572 110 ntBASIC1.13□□□□□ -2.23
ZNF540Q8NDQ6 MIR568-201ENST00000385036 95 ntBASIC1.13□□□□□ -2.23
ZNF540Q8NDQ6 SNORA12.1-201ENST00000390873 148 ntBASIC1.13□□□□□ -2.23
ZNF540Q8NDQ6 RNA5SP109-201ENST00000391010 116 ntBASIC1.13□□□□□ -2.23
ZNF540Q8NDQ6 RNU6-1109P-201ENST00000391187 107 ntBASIC1.13□□□□□ -2.23
ZNF540Q8NDQ6 RNA5SP467-201ENST00000391274 118 ntBASIC1.13□□□□□ -2.23
ZNF540Q8NDQ6 MIR1285-1-201ENST00000408593 84 ntBASIC1.13□□□□□ -2.23
ZNF540Q8NDQ6 AL118496.2-201ENST00000448300 230 ntBASIC1.13□□□□□ -2.23
ZNF540Q8NDQ6 MTND5P22-201ENST00000458380 195 ntBASIC1.13□□□□□ -2.23
ZNF540Q8NDQ6 HMGN1P7-201ENST00000491722 313 ntBASIC1.13□□□□□ -2.23
ZNF540Q8NDQ6 RNU6-496P-201ENST00000516145 99 ntBASIC1.13□□□□□ -2.23
ZNF540Q8NDQ6 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC1.13□□□□□ -2.23
ZNF540Q8NDQ6 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC1.13□□□□□ -2.23
ZNF540Q8NDQ6 AL442663.2-201ENST00000554385 511 ntBASIC1.13□□□□□ -2.23
ZNF540Q8NDQ6 AL117187.1-201ENST00000555482 181 ntBASIC1.13□□□□□ -2.23
ZNF540Q8NDQ6 AC136443.5-201ENST00000603741 370 ntBASIC1.13□□□□□ -2.23
ZNF540Q8NDQ6 MIR6504-201ENST00000613520 61 ntBASIC1.13□□□□□ -2.23
ZNF540Q8NDQ6 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC1.13□□□□□ -2.23
ZNF540Q8NDQ6 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.13□□□□□ -2.23
ZNF540Q8NDQ6 Y_RNA.422-201ENST00000384054 114 ntBASIC1.12□□□□□ -2.23
ZNF540Q8NDQ6 RNU6-472P-201ENST00000384299 107 ntBASIC1.12□□□□□ -2.23
ZNF540Q8NDQ6 Y_RNA.541-201ENST00000384640 113 ntBASIC1.12□□□□□ -2.23
ZNF540Q8NDQ6 RNU6-1105P-201ENST00000384774 107 ntBASIC1.12□□□□□ -2.23
ZNF540Q8NDQ6 Y_RNA.581-201ENST00000391017 97 ntBASIC1.12□□□□□ -2.23
ZNF540Q8NDQ6 AL031003.1-201ENST00000404229 172 ntBASIC1.12□□□□□ -2.23
ZNF540Q8NDQ6 RNU2-61P-201ENST00000411069 191 ntBASIC1.12□□□□□ -2.23
ZNF540Q8NDQ6 MRPL35P3-201ENST00000421557 364 ntBASIC1.12□□□□□ -2.23
ZNF540Q8NDQ6 RPS29P29-201ENST00000456396 171 ntBASIC1.12□□□□□ -2.23
ZNF540Q8NDQ6 SUMO2P16-201ENST00000519475 264 ntBASIC1.12□□□□□ -2.23
ZNF540Q8NDQ6 AC023157.2-201ENST00000540596 141 ntBASIC1.12□□□□□ -2.23
ZNF540Q8NDQ6 AC006504.6-201ENST00000590142 199 ntBASIC1.12□□□□□ -2.23
ZNF540Q8NDQ6 Y_RNA.772-201ENST00000606692 102 ntBASIC1.12□□□□□ -2.23
ZNF540Q8NDQ6 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.12□□□□□ -2.23
ZNF540Q8NDQ6 U6.73-201ENST00000619194 103 ntBASIC1.12□□□□□ -2.23
ZNF540Q8NDQ6 AC068700.1-201ENST00000565862 3754 ntBASIC1.11□□□□□ -2.23
ZNF540Q8NDQ6 Y_RNA.19-201ENST00000362462 99 ntBASIC1.11□□□□□ -2.23
ZNF540Q8NDQ6 RNU6-770P-201ENST00000363929 105 ntBASIC1.11□□□□□ -2.23
ZNF540Q8NDQ6 Y_RNA.518-201ENST00000384552 113 ntBASIC1.11□□□□□ -2.23
ZNF540Q8NDQ6 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC1.11□□□□□ -2.23
ZNF540Q8NDQ6 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.11□□□□□ -2.23
ZNF540Q8NDQ6 MRPS10P1-201ENST00000448483 130 ntBASIC1.11□□□□□ -2.23
ZNF540Q8NDQ6 AC010598.1-201ENST00000510378 103 ntBASIC1.11□□□□□ -2.23
ZNF540Q8NDQ6 SNORA31.4-201ENST00000516049 129 ntBASIC1.11□□□□□ -2.23
ZNF540Q8NDQ6 RNU6-327P-201ENST00000516270 127 ntBASIC1.11□□□□□ -2.23
ZNF540Q8NDQ6 SNORA70.22-201ENST00000517160 124 ntBASIC1.11□□□□□ -2.23
ZNF540Q8NDQ6 AC027419.1-201ENST00000522976 328 ntBASIC1.11□□□□□ -2.23
ZNF540Q8NDQ6 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC1.11□□□□□ -2.23
ZNF540Q8NDQ6 MIR3145-201ENST00000580727 82 ntBASIC1.11□□□□□ -2.23
ZNF540Q8NDQ6 MIR4661-201ENST00000582720 75 ntBASIC1.11□□□□□ -2.23
ZNF540Q8NDQ6 AC008737.2-201ENST00000599446 118 ntBASIC1.11□□□□□ -2.23
ZNF540Q8NDQ6 AL162424.1-201ENST00000602325 221 ntBASIC1.11□□□□□ -2.23
ZNF540Q8NDQ6 AC073413.2-201ENST00000604332 360 ntBASIC1.11□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 102.6 ms