Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 AL162274.2-201ENST00000614406 332 ntBASIC3.5□□□□□ -1.85
NPAS3Q8IXF0 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC3.5□□□□□ -1.85
NPAS3Q8IXF0 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.5□□□□□ -1.85
NPAS3Q8IXF0 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
NPAS3Q8IXF0 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.5□□□□□ -1.85
NPAS3Q8IXF0 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.5□□□□□ -1.85
NPAS3Q8IXF0 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC3.5□□□□□ -1.85
NPAS3Q8IXF0 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.5□□□□□ -1.85
NPAS3Q8IXF0 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC3.49□□□□□ -1.85
NPAS3Q8IXF0 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC3.49□□□□□ -1.85
NPAS3Q8IXF0 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
NPAS3Q8IXF0 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.49□□□□□ -1.85
NPAS3Q8IXF0 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.49□□□□□ -1.85
NPAS3Q8IXF0 RNU6-50P-201ENST00000362356 103 ntBASIC3.49□□□□□ -1.85
NPAS3Q8IXF0 Y_RNA.205-201ENST00000364128 113 ntBASIC3.49□□□□□ -1.85
NPAS3Q8IXF0 Y_RNA.470-201ENST00000384307 117 ntBASIC3.49□□□□□ -1.85
NPAS3Q8IXF0 AL159169.1-201ENST00000421119 127 ntBASIC3.49□□□□□ -1.85
NPAS3Q8IXF0 AC006989.1-201ENST00000427212 131 ntBASIC3.49□□□□□ -1.85
NPAS3Q8IXF0 RNU6-871P-201ENST00000516122 100 ntBASIC3.49□□□□□ -1.85
NPAS3Q8IXF0 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC3.49□□□□□ -1.85
NPAS3Q8IXF0 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.49□□□□□ -1.85
NPAS3Q8IXF0 U7.8-201ENST00000619968 63 ntBASIC3.49□□□□□ -1.85
NPAS3Q8IXF0 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.49□□□□□ -1.85
NPAS3Q8IXF0 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.49□□□□□ -1.85
NPAS3Q8IXF0 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC3.49□□□□□ -1.85
NPAS3Q8IXF0 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.49□□□□□ -1.85
NPAS3Q8IXF0 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
NPAS3Q8IXF0 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.49□□□□□ -1.85
NPAS3Q8IXF0 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
NPAS3Q8IXF0 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
NPAS3Q8IXF0 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.48□□□□□ -1.85
NPAS3Q8IXF0 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
NPAS3Q8IXF0 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.48□□□□□ -1.85
NPAS3Q8IXF0 RNA5SP129-201ENST00000410276 118 ntBASIC3.48□□□□□ -1.85
NPAS3Q8IXF0 RNU4-47P-201ENST00000410876 114 ntBASIC3.48□□□□□ -1.85
NPAS3Q8IXF0 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.48□□□□□ -1.85
NPAS3Q8IXF0 Vault.1-201ENST00000516474 102 ntBASIC3.48□□□□□ -1.85
NPAS3Q8IXF0 RNU6-1015P-201ENST00000517121 99 ntBASIC3.48□□□□□ -1.85
NPAS3Q8IXF0 AC026333.2-201ENST00000542164 106 ntBASIC3.48□□□□□ -1.85
NPAS3Q8IXF0 AC090115.4-201ENST00000609970 188 ntBASIC3.48□□□□□ -1.85
NPAS3Q8IXF0 AL353149.1-201ENST00000610667 244 ntBASIC3.48□□□□□ -1.85
NPAS3Q8IXF0 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
NPAS3Q8IXF0 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
NPAS3Q8IXF0 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.47□□□□□ -1.85
NPAS3Q8IXF0 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
NPAS3Q8IXF0 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.47□□□□□ -1.85
NPAS3Q8IXF0 AC092881.1-201ENST00000638218 2733 ntBASIC3.47□□□□□ -1.85
NPAS3Q8IXF0 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
NPAS3Q8IXF0 SNORA7.2-201ENST00000364446 145 ntBASIC3.47□□□□□ -1.85
NPAS3Q8IXF0 SNORA32-201ENST00000384072 121 ntBASIC3.47□□□□□ -1.85
NPAS3Q8IXF0 RNU6-411P-201ENST00000384451 107 ntBASIC3.47□□□□□ -1.85
NPAS3Q8IXF0 AL627390.1-201ENST00000396055 340 ntBASIC3.47□□□□□ -1.85
NPAS3Q8IXF0 RNU6-613P-201ENST00000410412 108 ntBASIC3.47□□□□□ -1.85
NPAS3Q8IXF0 Z98742.2-201ENST00000431564 187 ntBASIC3.47□□□□□ -1.85
NPAS3Q8IXF0 AC244505.4-201ENST00000434905 287 ntBASIC3.47□□□□□ -1.85
NPAS3Q8IXF0 SSXP5-201ENST00000443473 287 ntBASIC3.47□□□□□ -1.85
NPAS3Q8IXF0 HMGN2P21-201ENST00000447764 270 ntBASIC3.47□□□□□ -1.85
NPAS3Q8IXF0 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC3.47□□□□□ -1.85
NPAS3Q8IXF0 RNU6-965P-201ENST00000516721 96 ntBASIC3.47□□□□□ -1.85
NPAS3Q8IXF0 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC3.47□□□□□ -1.85
NPAS3Q8IXF0 AC079598.5-201ENST00000547460 117 ntBASIC3.47□□□□□ -1.85
NPAS3Q8IXF0 MIR4738-201ENST00000579134 87 ntBASIC3.47□□□□□ -1.85
NPAS3Q8IXF0 MIR3124-201ENST00000582636 67 ntBASIC3.47□□□□□ -1.85
NPAS3Q8IXF0 MIR6852-201ENST00000621699 66 ntBASIC3.47□□□□□ -1.85
NPAS3Q8IXF0 MIR6079-201ENST00000635807 62 ntBASIC3.47□□□□□ -1.85
NPAS3Q8IXF0 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
NPAS3Q8IXF0 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC3.46□□□□□ -1.86
NPAS3Q8IXF0 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
NPAS3Q8IXF0 Y_RNA.140-201ENST00000363474 103 ntBASIC3.46□□□□□ -1.86
NPAS3Q8IXF0 RNU6-1274P-201ENST00000384557 107 ntBASIC3.46□□□□□ -1.86
NPAS3Q8IXF0 SNRPGP14-201ENST00000435400 219 ntBASIC3.46□□□□□ -1.86
NPAS3Q8IXF0 AC087499.4-201ENST00000448505 178 ntBASIC3.46□□□□□ -1.86
NPAS3Q8IXF0 RNU1-98P-201ENST00000458992 160 ntBASIC3.46□□□□□ -1.86
NPAS3Q8IXF0 RNA5SP310-201ENST00000459084 116 ntBASIC3.46□□□□□ -1.86
NPAS3Q8IXF0 AL049830.1-201ENST00000468034 425 ntBASIC3.46□□□□□ -1.86
NPAS3Q8IXF0 RNU6-917P-201ENST00000516294 104 ntBASIC3.46□□□□□ -1.86
NPAS3Q8IXF0 SNORA25.13-201ENST00000516395 103 ntBASIC3.46□□□□□ -1.86
NPAS3Q8IXF0 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.46□□□□□ -1.86
NPAS3Q8IXF0 AC006386.2-201ENST00000624491 75 ntBASIC3.46□□□□□ -1.86
NPAS3Q8IXF0 AC012005.1-201ENST00000624575 75 ntBASIC3.46□□□□□ -1.86
NPAS3Q8IXF0 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
NPAS3Q8IXF0 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
NPAS3Q8IXF0 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.46□□□□□ -1.86
NPAS3Q8IXF0 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
NPAS3Q8IXF0 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC3.46□□□□□ -1.86
NPAS3Q8IXF0 USP8P1-201ENST00000494673 3183 ntBASIC3.45□□□□□ -1.86
NPAS3Q8IXF0 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC3.45□□□□□ -1.86
NPAS3Q8IXF0 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
NPAS3Q8IXF0 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
NPAS3Q8IXF0 SNORD115-39-201ENST00000363694 82 ntBASIC3.45□□□□□ -1.86
NPAS3Q8IXF0 Y_RNA.241-201ENST00000364470 117 ntBASIC3.45□□□□□ -1.86
NPAS3Q8IXF0 Y_RNA.386-201ENST00000383913 105 ntBASIC3.45□□□□□ -1.86
NPAS3Q8IXF0 SNORA27-201ENST00000384323 126 ntBASIC3.45□□□□□ -1.86
NPAS3Q8IXF0 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.45□□□□□ -1.86
NPAS3Q8IXF0 RNU7-170P-201ENST00000459303 61 ntBASIC3.45□□□□□ -1.86
NPAS3Q8IXF0 IGHVIII-5-1-201ENST00000523059 99 ntBASIC3.45□□□□□ -1.86
NPAS3Q8IXF0 ZNF861P-201ENST00000588126 639 ntBASIC3.45□□□□□ -1.86
NPAS3Q8IXF0 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3.45□□□□□ -1.86
NPAS3Q8IXF0 RNVU1-4-201ENST00000612985 164 ntBASIC3.45□□□□□ -1.86
NPAS3Q8IXF0 AL110115.1-201ENST00000614396 364 ntBASIC3.45□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 101.7 ms