Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 RNVU1-2-201ENST00000516326 135 ntBASIC2.09□□□□□ -2.07
PTCHD3Q3KNS1 AP002004.2-201ENST00000531656 154 ntBASIC2.09□□□□□ -2.07
PTCHD3Q3KNS1 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC2.09□□□□□ -2.08
PTCHD3Q3KNS1 Y_RNA.121-201ENST00000363309 113 ntBASIC2.08□□□□□ -2.08
PTCHD3Q3KNS1 Y_RNA.203-201ENST00000364106 102 ntBASIC2.08□□□□□ -2.08
PTCHD3Q3KNS1 RNU4-17P-201ENST00000365598 141 ntBASIC2.08□□□□□ -2.08
PTCHD3Q3KNS1 RNU6-918P-201ENST00000391219 106 ntBASIC2.08□□□□□ -2.08
PTCHD3Q3KNS1 RNA5SP496-201ENST00000391240 109 ntBASIC2.08□□□□□ -2.08
PTCHD3Q3KNS1 AL512604.1-201ENST00000404812 257 ntBASIC2.08□□□□□ -2.08
PTCHD3Q3KNS1 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC2.08□□□□□ -2.08
PTCHD3Q3KNS1 RPS27P1-201ENST00000450552 247 ntBASIC2.08□□□□□ -2.08
PTCHD3Q3KNS1 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC2.08□□□□□ -2.08
PTCHD3Q3KNS1 RNU7-120P-201ENST00000459334 63 ntBASIC2.08□□□□□ -2.08
PTCHD3Q3KNS1 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC2.08□□□□□ -2.08
PTCHD3Q3KNS1 MIR5002-201ENST00000584713 97 ntBASIC2.08□□□□□ -2.08
PTCHD3Q3KNS1 AC022217.4-201ENST00000604389 163 ntBASIC2.08□□□□□ -2.08
PTCHD3Q3KNS1 AC072026.1-201ENST00000605023 201 ntBASIC2.08□□□□□ -2.08
PTCHD3Q3KNS1 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC2.08□□□□□ -2.08
PTCHD3Q3KNS1 AC004792.1-201ENST00000614523 137 ntBASIC2.08□□□□□ -2.08
PTCHD3Q3KNS1 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC2.08□□□□□ -2.08
PTCHD3Q3KNS1 GS1-279B7.1-204ENST00000641809 378 ntBASIC2.08□□□□□ -2.08
PTCHD3Q3KNS1 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.08□□□□□ -2.08
PTCHD3Q3KNS1 MIR367-201ENST00000362299 68 ntBASIC2.07□□□□□ -2.08
PTCHD3Q3KNS1 RNU6-381P-201ENST00000391259 108 ntBASIC2.07□□□□□ -2.08
PTCHD3Q3KNS1 AL023284.1-201ENST00000403956 276 ntBASIC2.07□□□□□ -2.08
PTCHD3Q3KNS1 RNU6ATAC15P-201ENST00000408279 121 ntBASIC2.07□□□□□ -2.08
PTCHD3Q3KNS1 MTND5P15-201ENST00000434246 349 ntBASIC2.07□□□□□ -2.08
PTCHD3Q3KNS1 RN7SKP164-201ENST00000516138 266 ntBASIC2.07□□□□□ -2.08
PTCHD3Q3KNS1 RNY3P16-201ENST00000516338 101 ntBASIC2.07□□□□□ -2.08
PTCHD3Q3KNS1 HMSD-204ENST00000526932 162 ntTSL 3 BASIC2.07□□□□□ -2.08
PTCHD3Q3KNS1 AL929325.1-201ENST00000603096 117 ntBASIC2.07□□□□□ -2.08
PTCHD3Q3KNS1 AC098479.1-201ENST00000609225 154 ntBASIC2.07□□□□□ -2.08
PTCHD3Q3KNS1 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC2.07□□□□□ -2.08
PTCHD3Q3KNS1 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC2.07□□□□□ -2.08
PTCHD3Q3KNS1 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
PTCHD3Q3KNS1 Y_RNA.7-201ENST00000362352 102 ntBASIC2.06□□□□□ -2.08
PTCHD3Q3KNS1 RNU6-103P-201ENST00000363686 107 ntBASIC2.06□□□□□ -2.08
PTCHD3Q3KNS1 RNU6-950P-201ENST00000384651 107 ntBASIC2.06□□□□□ -2.08
PTCHD3Q3KNS1 MIR520A-201ENST00000384862 85 ntBASIC2.06□□□□□ -2.08
PTCHD3Q3KNS1 MIR1289-2-201ENST00000408360 111 ntBASIC2.06□□□□□ -2.08
PTCHD3Q3KNS1 COX6CP10-201ENST00000416832 224 ntBASIC2.06□□□□□ -2.08
PTCHD3Q3KNS1 RNU7-28P-201ENST00000516759 62 ntBASIC2.06□□□□□ -2.08
PTCHD3Q3KNS1 MIR4308-201ENST00000580634 81 ntBASIC2.06□□□□□ -2.08
PTCHD3Q3KNS1 MIR7843-201ENST00000622274 79 ntBASIC2.06□□□□□ -2.08
PTCHD3Q3KNS1 AC008555.8-201ENST00000623602 2168 ntBASIC2.06□□□□□ -2.08
PTCHD3Q3KNS1 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.05□□□□□ -2.08
PTCHD3Q3KNS1 Y_RNA.24-201ENST00000362508 103 ntBASIC2.05□□□□□ -2.08
PTCHD3Q3KNS1 RNU6-112P-201ENST00000363599 104 ntBASIC2.05□□□□□ -2.08
PTCHD3Q3KNS1 Y_RNA.267-201ENST00000364679 109 ntBASIC2.05□□□□□ -2.08
PTCHD3Q3KNS1 RNU6-923P-201ENST00000364753 107 ntBASIC2.05□□□□□ -2.08
PTCHD3Q3KNS1 RNU6-969P-201ENST00000383900 105 ntBASIC2.05□□□□□ -2.08
PTCHD3Q3KNS1 MIR616-201ENST00000385293 97 ntBASIC2.05□□□□□ -2.08
PTCHD3Q3KNS1 RNU6-493P-201ENST00000391321 108 ntBASIC2.05□□□□□ -2.08
PTCHD3Q3KNS1 RN7SKP101-201ENST00000411376 320 ntBASIC2.05□□□□□ -2.08
PTCHD3Q3KNS1 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC2.05□□□□□ -2.08
PTCHD3Q3KNS1 AC233266.1-201ENST00000454518 96 ntBASIC2.05□□□□□ -2.08
PTCHD3Q3KNS1 AL049830.1-201ENST00000468034 425 ntBASIC2.05□□□□□ -2.08
PTCHD3Q3KNS1 UBL5P3-201ENST00000475112 231 ntBASIC2.05□□□□□ -2.08
PTCHD3Q3KNS1 RNU6-1291P-201ENST00000516591 104 ntBASIC2.05□□□□□ -2.08
PTCHD3Q3KNS1 AP002392.1-201ENST00000537692 208 ntBASIC2.05□□□□□ -2.08
PTCHD3Q3KNS1 AC242852.1-201ENST00000612151 96 ntBASIC2.05□□□□□ -2.08
PTCHD3Q3KNS1 AL391903.3-201ENST00000612158 163 ntBASIC2.05□□□□□ -2.08
PTCHD3Q3KNS1 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC2.05□□□□□ -2.08
PTCHD3Q3KNS1 AC244015.1-201ENST00000622301 99 ntBASIC2.05□□□□□ -2.08
PTCHD3Q3KNS1 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.05□□□□□ -2.08
PTCHD3Q3KNS1 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.05□□□□□ -2.08
PTCHD3Q3KNS1 SNORA1B-201ENST00000362535 133 ntBASIC2.04□□□□□ -2.08
PTCHD3Q3KNS1 SNORD114-1-201ENST00000362705 72 ntBASIC2.04□□□□□ -2.08
PTCHD3Q3KNS1 RNU4-10P-201ENST00000364383 140 ntBASIC2.04□□□□□ -2.08
PTCHD3Q3KNS1 RNU6-47P-201ENST00000383866 107 ntBASIC2.04□□□□□ -2.08
PTCHD3Q3KNS1 RNY3P5-201ENST00000384127 102 ntBASIC2.04□□□□□ -2.08
PTCHD3Q3KNS1 RNU6-296P-201ENST00000384608 107 ntBASIC2.04□□□□□ -2.08
PTCHD3Q3KNS1 Y_RNA.571-201ENST00000384753 98 ntBASIC2.04□□□□□ -2.08
PTCHD3Q3KNS1 MIR504-201ENST00000385065 83 ntBASIC2.04□□□□□ -2.08
PTCHD3Q3KNS1 MIR1278-201ENST00000408753 81 ntBASIC2.04□□□□□ -2.08
PTCHD3Q3KNS1 RNU6-383P-201ENST00000410864 94 ntBASIC2.04□□□□□ -2.08
PTCHD3Q3KNS1 AC245047.3-201ENST00000429428 127 ntBASIC2.04□□□□□ -2.08
PTCHD3Q3KNS1 FTX_2.1-201ENST00000618816 94 ntBASIC2.04□□□□□ -2.08
PTCHD3Q3KNS1 MIR8054-201ENST00000620877 86 ntBASIC2.04□□□□□ -2.08
PTCHD3Q3KNS1 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC2.03□□□□□ -2.08
PTCHD3Q3KNS1 Y_RNA.796-201ENST00000364268 102 ntBASIC2.03□□□□□ -2.08
PTCHD3Q3KNS1 snoU2_19.4-201ENST00000364329 80 ntBASIC2.03□□□□□ -2.08
PTCHD3Q3KNS1 Y_RNA.233-201ENST00000364407 101 ntBASIC2.03□□□□□ -2.08
PTCHD3Q3KNS1 Y_RNA.238-201ENST00000364441 102 ntBASIC2.03□□□□□ -2.08
PTCHD3Q3KNS1 Y_RNA.799-201ENST00000364992 102 ntBASIC2.03□□□□□ -2.08
PTCHD3Q3KNS1 RNU6-1080P-201ENST00000383982 107 ntBASIC2.03□□□□□ -2.08
PTCHD3Q3KNS1 RNA5SP109-201ENST00000391010 116 ntBASIC2.03□□□□□ -2.08
PTCHD3Q3KNS1 RNU6-1228P-201ENST00000391014 107 ntBASIC2.03□□□□□ -2.08
PTCHD3Q3KNS1 RNA5SP212-201ENST00000391223 107 ntBASIC2.03□□□□□ -2.08
PTCHD3Q3KNS1 RNA5SP482-201ENST00000391269 118 ntBASIC2.03□□□□□ -2.08
PTCHD3Q3KNS1 HMGN2P38-201ENST00000423806 265 ntBASIC2.03□□□□□ -2.08
PTCHD3Q3KNS1 PIGPP3-201ENST00000425307 415 ntBASIC2.03□□□□□ -2.08
PTCHD3Q3KNS1 AL606517.2-201ENST00000442855 241 ntBASIC2.03□□□□□ -2.08
PTCHD3Q3KNS1 RNA5SP481-201ENST00000516814 122 ntBASIC2.03□□□□□ -2.08
PTCHD3Q3KNS1 RNU2-56P-201ENST00000516826 190 ntBASIC2.03□□□□□ -2.08
PTCHD3Q3KNS1 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC2.03□□□□□ -2.08
PTCHD3Q3KNS1 MIR4744-201ENST00000581563 82 ntBASIC2.03□□□□□ -2.08
PTCHD3Q3KNS1 AL021707.8-201ENST00000609428 183 ntBASIC2.03□□□□□ -2.08
PTCHD3Q3KNS1 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC2.03□□□□□ -2.08
PTCHD3Q3KNS1 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.02□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 170.2 ms