Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.7□□□□□ -2.14
COL28A1Q2UY09 RPS29P11-201ENST00000496507 171 ntBASIC1.7□□□□□ -2.14
COL28A1Q2UY09 RNU6-63P-201ENST00000516690 95 ntBASIC1.7□□□□□ -2.14
COL28A1Q2UY09 RNU7-28P-201ENST00000516759 62 ntBASIC1.7□□□□□ -2.14
COL28A1Q2UY09 AC022709.1-201ENST00000615967 87 ntBASIC1.7□□□□□ -2.14
COL28A1Q2UY09 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
COL28A1Q2UY09 RNU6-806P-201ENST00000365147 105 ntBASIC1.69□□□□□ -2.14
COL28A1Q2UY09 Y_RNA.418-201ENST00000384029 102 ntBASIC1.69□□□□□ -2.14
COL28A1Q2UY09 RNU6-439P-201ENST00000384188 106 ntBASIC1.69□□□□□ -2.14
COL28A1Q2UY09 Y_RNA.569-201ENST00000384749 103 ntBASIC1.69□□□□□ -2.14
COL28A1Q2UY09 MIR194-1-201ENST00000384892 85 ntBASIC1.69□□□□□ -2.14
COL28A1Q2UY09 RNU6-855P-201ENST00000410395 104 ntBASIC1.69□□□□□ -2.14
COL28A1Q2UY09 RPL21P38-201ENST00000418090 167 ntBASIC1.69□□□□□ -2.14
COL28A1Q2UY09 AC008834.1-201ENST00000511612 175 ntBASIC1.69□□□□□ -2.14
COL28A1Q2UY09 SCARNA15.1-201ENST00000516384 125 ntBASIC1.69□□□□□ -2.14
COL28A1Q2UY09 RNU6-1096P-201ENST00000517089 102 ntBASIC1.69□□□□□ -2.14
COL28A1Q2UY09 AL117187.1-201ENST00000555482 181 ntBASIC1.69□□□□□ -2.14
COL28A1Q2UY09 AC024614.2-201ENST00000577584 372 ntBASIC1.69□□□□□ -2.14
COL28A1Q2UY09 SNORA77B-201ENST00000578179 125 ntBASIC1.69□□□□□ -2.14
COL28A1Q2UY09 AL929325.1-201ENST00000603096 117 ntBASIC1.69□□□□□ -2.14
COL28A1Q2UY09 AC005972.2-201ENST00000604690 348 ntBASIC1.69□□□□□ -2.14
COL28A1Q2UY09 SNORA28-201ENST00000606769 126 ntBASIC1.69□□□□□ -2.14
COL28A1Q2UY09 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC1.69□□□□□ -2.14
COL28A1Q2UY09 AC100821.1-201ENST00000523153 2479 ntBASIC1.69□□□□□ -2.14
COL28A1Q2UY09 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
COL28A1Q2UY09 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.68□□□□□ -2.14
COL28A1Q2UY09 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC1.68□□□□□ -2.14
COL28A1Q2UY09 Y_RNA.26-201ENST00000362539 101 ntBASIC1.68□□□□□ -2.14
COL28A1Q2UY09 Y_RNA.64-201ENST00000362845 102 ntBASIC1.68□□□□□ -2.14
COL28A1Q2UY09 Y_RNA.172-201ENST00000363765 102 ntBASIC1.68□□□□□ -2.14
COL28A1Q2UY09 Y_RNA.341-201ENST00000365341 102 ntBASIC1.68□□□□□ -2.14
COL28A1Q2UY09 RNU6-326P-201ENST00000365480 107 ntBASIC1.68□□□□□ -2.14
COL28A1Q2UY09 RNU6-1323P-201ENST00000384025 107 ntBASIC1.68□□□□□ -2.14
COL28A1Q2UY09 AL034345.1-201ENST00000407768 123 ntBASIC1.68□□□□□ -2.14
COL28A1Q2UY09 RPL31P63-201ENST00000422565 375 ntBASIC1.68□□□□□ -2.14
COL28A1Q2UY09 U8.19-201ENST00000459095 133 ntBASIC1.68□□□□□ -2.14
COL28A1Q2UY09 AC098869.1-201ENST00000481627 292 ntBASIC1.68□□□□□ -2.14
COL28A1Q2UY09 AC099513.1-201ENST00000490423 301 ntBASIC1.68□□□□□ -2.14
COL28A1Q2UY09 AC008737.2-201ENST00000599446 118 ntBASIC1.68□□□□□ -2.14
COL28A1Q2UY09 AC136443.5-201ENST00000603741 370 ntBASIC1.68□□□□□ -2.14
COL28A1Q2UY09 AL360085.1-201ENST00000604713 532 ntBASIC1.68□□□□□ -2.14
COL28A1Q2UY09 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.68□□□□□ -2.14
COL28A1Q2UY09 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.67□□□□□ -2.14
COL28A1Q2UY09 Y_RNA.84-201ENST00000363011 104 ntBASIC1.67□□□□□ -2.14
COL28A1Q2UY09 RNU4-80P-201ENST00000363200 141 ntBASIC1.67□□□□□ -2.14
COL28A1Q2UY09 RNU4-13P-201ENST00000364019 141 ntBASIC1.67□□□□□ -2.14
COL28A1Q2UY09 Y_RNA.205-201ENST00000364128 113 ntBASIC1.67□□□□□ -2.14
COL28A1Q2UY09 SNORA16.1-201ENST00000364597 132 ntBASIC1.67□□□□□ -2.14
COL28A1Q2UY09 Y_RNA.541-201ENST00000384640 113 ntBASIC1.67□□□□□ -2.14
COL28A1Q2UY09 MIR1267-201ENST00000408723 78 ntBASIC1.67□□□□□ -2.14
COL28A1Q2UY09 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC1.67□□□□□ -2.14
COL28A1Q2UY09 DYNLT3P2-201ENST00000442517 295 ntBASIC1.67□□□□□ -2.14
COL28A1Q2UY09 RNU7-34P-201ENST00000459394 64 ntBASIC1.67□□□□□ -2.14
COL28A1Q2UY09 RNU6-191P-201ENST00000516295 94 ntBASIC1.67□□□□□ -2.14
COL28A1Q2UY09 RNU2-56P-201ENST00000516826 190 ntBASIC1.67□□□□□ -2.14
COL28A1Q2UY09 RNU7-116P-201ENST00000516940 62 ntBASIC1.67□□□□□ -2.14
COL28A1Q2UY09 RNU2-31P-201ENST00000516954 155 ntBASIC1.67□□□□□ -2.14
COL28A1Q2UY09 AC136628.3-201ENST00000521868 290 ntBASIC1.67□□□□□ -2.14
COL28A1Q2UY09 MIR3145-201ENST00000580727 82 ntBASIC1.67□□□□□ -2.14
COL28A1Q2UY09 AC021506.2-201ENST00000612354 169 ntBASIC1.67□□□□□ -2.14
COL28A1Q2UY09 RNU6-1123P-201ENST00000362347 106 ntBASIC1.66□□□□□ -2.14
COL28A1Q2UY09 SNORA1B-201ENST00000362535 133 ntBASIC1.66□□□□□ -2.14
COL28A1Q2UY09 RNU6-342P-201ENST00000384521 104 ntBASIC1.66□□□□□ -2.14
COL28A1Q2UY09 MIR215-201ENST00000384858 110 ntBASIC1.66□□□□□ -2.14
COL28A1Q2UY09 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC1.66□□□□□ -2.14
COL28A1Q2UY09 SNORA12.1-201ENST00000390873 148 ntBASIC1.66□□□□□ -2.14
COL28A1Q2UY09 SNORA53-201ENST00000391141 249 ntBASIC1.66□□□□□ -2.14
COL28A1Q2UY09 RNA5SP482-201ENST00000391269 118 ntBASIC1.66□□□□□ -2.14
COL28A1Q2UY09 MTCO1P5-201ENST00000433573 344 ntBASIC1.66□□□□□ -2.14
COL28A1Q2UY09 AC107393.1-201ENST00000512403 346 ntBASIC1.66□□□□□ -2.14
COL28A1Q2UY09 RNU6-1291P-201ENST00000516591 104 ntBASIC1.66□□□□□ -2.14
COL28A1Q2UY09 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC1.66□□□□□ -2.14
COL28A1Q2UY09 AC037487.3-201ENST00000606668 112 ntBASIC1.66□□□□□ -2.14
COL28A1Q2UY09 AL078604.3-201ENST00000615580 211 ntBASIC1.66□□□□□ -2.14
COL28A1Q2UY09 AC095038.3-201ENST00000634439 195 ntBASIC1.66□□□□□ -2.14
COL28A1Q2UY09 AC099654.10-201ENST00000640395 161 ntBASIC1.66□□□□□ -2.14
COL28A1Q2UY09 Y_RNA.162-201ENST00000363683 102 ntBASIC1.65□□□□□ -2.15
COL28A1Q2UY09 Y_RNA.267-201ENST00000364679 109 ntBASIC1.65□□□□□ -2.15
COL28A1Q2UY09 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.65□□□□□ -2.15
COL28A1Q2UY09 SNORA72-201ENST00000384339 132 ntBASIC1.65□□□□□ -2.15
COL28A1Q2UY09 Y_RNA.518-201ENST00000384552 113 ntBASIC1.65□□□□□ -2.15
COL28A1Q2UY09 RNU6-713P-201ENST00000384761 107 ntBASIC1.65□□□□□ -2.15
COL28A1Q2UY09 Y_RNA.574-201ENST00000384766 95 ntBASIC1.65□□□□□ -2.15
COL28A1Q2UY09 MIR934-201ENST00000401241 83 ntBASIC1.65□□□□□ -2.15
COL28A1Q2UY09 RNU6-1203P-201ENST00000410703 110 ntBASIC1.65□□□□□ -2.15
COL28A1Q2UY09 AL358176.2-201ENST00000425769 204 ntBASIC1.65□□□□□ -2.15
COL28A1Q2UY09 AL135790.2-201ENST00000437701 267 ntBASIC1.65□□□□□ -2.15
COL28A1Q2UY09 PGBD4P5-201ENST00000445958 426 ntBASIC1.65□□□□□ -2.15
COL28A1Q2UY09 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.65□□□□□ -2.15
COL28A1Q2UY09 RNU6-327P-201ENST00000516270 127 ntBASIC1.65□□□□□ -2.15
COL28A1Q2UY09 RNU6-635P-201ENST00000516651 102 ntBASIC1.65□□□□□ -2.15
COL28A1Q2UY09 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC1.65□□□□□ -2.15
COL28A1Q2UY09 MIR4285-201ENST00000581001 85 ntBASIC1.65□□□□□ -2.15
COL28A1Q2UY09 AL645939.4-201ENST00000604495 135 ntBASIC1.65□□□□□ -2.15
COL28A1Q2UY09 AP003357.1-201ENST00000604497 148 ntBASIC1.65□□□□□ -2.15
COL28A1Q2UY09 AL353621.2-201ENST00000605340 133 ntBASIC1.65□□□□□ -2.15
COL28A1Q2UY09 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.65□□□□□ -2.15
COL28A1Q2UY09 AL157834.3-201ENST00000615543 103 ntBASIC1.65□□□□□ -2.15
COL28A1Q2UY09 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.65□□□□□ -2.15
COL28A1Q2UY09 AL513423.1-201ENST00000621695 132 ntBASIC1.65□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 107.4 ms