Protein–RNA interactions for Protein: P51784

USP11, Ubiquitin carboxyl-terminal hydrolase 11, humanhuman

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP11P51784 RNU1-112P-201ENST00000364401 164 ntBASIC3.13□□□□□ -1.91
USP11P51784 U8.6-201ENST00000364939 135 ntBASIC3.13□□□□□ -1.91
USP11P51784 Y_RNA.366-201ENST00000365540 102 ntBASIC3.13□□□□□ -1.91
USP11P51784 MIR548A2-201ENST00000384956 97 ntBASIC3.13□□□□□ -1.91
USP11P51784 MIR218-1-201ENST00000384999 110 ntBASIC3.13□□□□□ -1.91
USP11P51784 SNORA12.1-201ENST00000390873 148 ntBASIC3.13□□□□□ -1.91
USP11P51784 SNORD77.3-201ENST00000391113 65 ntBASIC3.13□□□□□ -1.91
USP11P51784 AL590004.2-201ENST00000404787 371 ntBASIC3.13□□□□□ -1.91
USP11P51784 RNA5SP21-201ENST00000410917 96 ntBASIC3.13□□□□□ -1.91
USP11P51784 AC060773.1-201ENST00000421698 310 ntBASIC3.13□□□□□ -1.91
USP11P51784 HMGN2P32-201ENST00000444648 269 ntBASIC3.13□□□□□ -1.91
USP11P51784 SEM1P1-201ENST00000506694 209 ntBASIC3.13□□□□□ -1.91
USP11P51784 Y_RNA.666-201ENST00000516187 112 ntBASIC3.13□□□□□ -1.91
USP11P51784 SNORA9.3-201ENST00000516383 129 ntBASIC3.13□□□□□ -1.91
USP11P51784 RNU6-1149P-201ENST00000516810 97 ntBASIC3.13□□□□□ -1.91
USP11P51784 GTF3AP2-201ENST00000557014 266 ntBASIC3.13□□□□□ -1.91
USP11P51784 AC006023.1-201ENST00000603944 259 ntBASIC3.13□□□□□ -1.91
USP11P51784 AP001318.4-201ENST00000616637 121 ntBASIC3.13□□□□□ -1.91
USP11P51784 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
USP11P51784 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
USP11P51784 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.12□□□□□ -1.91
USP11P51784 Y_RNA.328-201ENST00000365208 113 ntBASIC3.12□□□□□ -1.91
USP11P51784 MIR570-201ENST00000384917 97 ntBASIC3.12□□□□□ -1.91
USP11P51784 RNU2-32P-201ENST00000411193 191 ntBASIC3.12□□□□□ -1.91
USP11P51784 HMGN2P35-201ENST00000412164 270 ntBASIC3.12□□□□□ -1.91
USP11P51784 Z96811.1-201ENST00000445880 108 ntBASIC3.12□□□□□ -1.91
USP11P51784 RNU7-128P-201ENST00000517247 62 ntBASIC3.12□□□□□ -1.91
USP11P51784 RPL12P50-201ENST00000603116 116 ntBASIC3.12□□□□□ -1.91
USP11P51784 AC073413.2-201ENST00000604332 360 ntBASIC3.12□□□□□ -1.91
USP11P51784 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC3.12□□□□□ -1.91
USP11P51784 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC3.12□□□□□ -1.91
USP11P51784 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
USP11P51784 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC3.12□□□□□ -1.91
USP11P51784 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
USP11P51784 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC3.11□□□□□ -1.91
USP11P51784 RNU6-766P-201ENST00000362478 107 ntBASIC3.11□□□□□ -1.91
USP11P51784 RNU6-743P-201ENST00000364151 106 ntBASIC3.11□□□□□ -1.91
USP11P51784 Y_RNA.253-201ENST00000364562 112 ntBASIC3.11□□□□□ -1.91
USP11P51784 SNORD24-201ENST00000383884 75 ntBASIC3.11□□□□□ -1.91
USP11P51784 RNA5SP136-201ENST00000410906 107 ntBASIC3.11□□□□□ -1.91
USP11P51784 Y_RNA.621-201ENST00000411065 96 ntBASIC3.11□□□□□ -1.91
USP11P51784 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC3.11□□□□□ -1.91
USP11P51784 HMGN1P7-201ENST00000491722 313 ntBASIC3.11□□□□□ -1.91
USP11P51784 RPS29P21-201ENST00000496272 170 ntBASIC3.11□□□□□ -1.91
USP11P51784 AC093259.1-201ENST00000509755 300 ntBASIC3.11□□□□□ -1.91
USP11P51784 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC3.11□□□□□ -1.91
USP11P51784 RNU6-856P-201ENST00000516959 98 ntBASIC3.11□□□□□ -1.91
USP11P51784 SCARNA11.3-201ENST00000517276 130 ntBASIC3.11□□□□□ -1.91
USP11P51784 MIR3199-1-201ENST00000582434 88 ntBASIC3.11□□□□□ -1.91
USP11P51784 AC008507.4-201ENST00000585464 127 ntBASIC3.11□□□□□ -1.91
USP11P51784 AL137067.1-201ENST00000615933 120 ntBASIC3.11□□□□□ -1.91
USP11P51784 AL035470.1-201ENST00000622571 220 ntBASIC3.11□□□□□ -1.91
USP11P51784 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.11□□□□□ -1.91
USP11P51784 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC3.11□□□□□ -1.91
USP11P51784 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC3.1□□□□□ -1.91
USP11P51784 AL161431.1-201ENST00000618966 4205 ntBASIC3.1□□□□□ -1.91
USP11P51784 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC3.1□□□□□ -1.91
USP11P51784 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC3.1□□□□□ -1.91
USP11P51784 Y_RNA.163-201ENST00000363702 113 ntBASIC3.1□□□□□ -1.91
USP11P51784 Y_RNA.332-201ENST00000365271 113 ntBASIC3.1□□□□□ -1.91
USP11P51784 RNU1-109P-201ENST00000383960 147 ntBASIC3.1□□□□□ -1.91
USP11P51784 RNU6-546P-201ENST00000383991 107 ntBASIC3.1□□□□□ -1.91
USP11P51784 RNU6-756P-201ENST00000383997 107 ntBASIC3.1□□□□□ -1.91
USP11P51784 SNORA51.10-201ENST00000384418 136 ntBASIC3.1□□□□□ -1.91
USP11P51784 MIR520G-201ENST00000385064 90 ntBASIC3.1□□□□□ -1.91
USP11P51784 SNORD88.1-201ENST00000408684 91 ntBASIC3.1□□□□□ -1.91
USP11P51784 AC123900.1-201ENST00000420390 96 ntBASIC3.1□□□□□ -1.91
USP11P51784 SNRPGP10-201ENST00000432323 225 ntBASIC3.1□□□□□ -1.91
USP11P51784 RNU6-113P-201ENST00000516653 101 ntBASIC3.1□□□□□ -1.91
USP11P51784 MIR4672-201ENST00000583126 81 ntBASIC3.1□□□□□ -1.91
USP11P51784 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC3.1□□□□□ -1.91
USP11P51784 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC3.1□□□□□ -1.91
USP11P51784 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC3.1□□□□□ -1.91
USP11P51784 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC3.1□□□□□ -1.91
USP11P51784 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC3.1□□□□□ -1.91
USP11P51784 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
USP11P51784 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
USP11P51784 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
USP11P51784 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
USP11P51784 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC3.09□□□□□ -1.91
USP11P51784 RNU1-23P-201ENST00000363361 144 ntBASIC3.09□□□□□ -1.91
USP11P51784 RNU2-48P-201ENST00000410694 191 ntBASIC3.09□□□□□ -1.91
USP11P51784 AC007064.1-201ENST00000412238 351 ntBASIC3.09□□□□□ -1.91
USP11P51784 MICF-203ENST00000432679 129 ntBASIC3.09□□□□□ -1.91
USP11P51784 UBBP3-201ENST00000445497 241 ntBASIC3.09□□□□□ -1.91
USP11P51784 RNU6-693P-201ENST00000516134 107 ntBASIC3.09□□□□□ -1.91
USP11P51784 RNU6-1291P-201ENST00000516591 104 ntBASIC3.09□□□□□ -1.91
USP11P51784 5S_rRNA.11-201ENST00000618635 84 ntBASIC3.09□□□□□ -1.91
USP11P51784 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC3.09□□□□□ -1.92
USP11P51784 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.08□□□□□ -1.92
USP11P51784 RNU6-1014P-201ENST00000383940 103 ntBASIC3.08□□□□□ -1.92
USP11P51784 SNORA51.5-201ENST00000384126 131 ntBASIC3.08□□□□□ -1.92
USP11P51784 RNU6-49P-201ENST00000384256 107 ntBASIC3.08□□□□□ -1.92
USP11P51784 MIR518F-201ENST00000384973 87 ntBASIC3.08□□□□□ -1.92
USP11P51784 MIR1253-201ENST00000408273 105 ntBASIC3.08□□□□□ -1.92
USP11P51784 RNU6-1186P-201ENST00000410429 97 ntBASIC3.08□□□□□ -1.92
USP11P51784 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC3.08□□□□□ -1.92
USP11P51784 HMGN2P34-201ENST00000437647 269 ntBASIC3.08□□□□□ -1.92
USP11P51784 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC3.08□□□□□ -1.92
USP11P51784 AC233266.1-201ENST00000454518 96 ntBASIC3.08□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 106.5 ms