Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 RNU1-78P-201ENST00000391248 165 ntBASIC1.76□□□□□ -2.13
CTCFP49711 MIR1323-201ENST00000408090 73 ntBASIC1.76□□□□□ -2.13
CTCFP49711 RNU4-30P-201ENST00000410245 143 ntBASIC1.76□□□□□ -2.13
CTCFP49711 AL161935.2-201ENST00000414627 60 ntBASIC1.76□□□□□ -2.13
CTCFP49711 AC010154.1-201ENST00000425857 269 ntBASIC1.76□□□□□ -2.13
CTCFP49711 AC091021.1-201ENST00000468051 388 ntBASIC1.76□□□□□ -2.13
CTCFP49711 AC005908.1-201ENST00000468701 347 ntBASIC1.76□□□□□ -2.13
CTCFP49711 COX6CP14-201ENST00000469580 174 ntBASIC1.76□□□□□ -2.13
CTCFP49711 AC099513.1-201ENST00000490423 301 ntBASIC1.76□□□□□ -2.13
CTCFP49711 RNU6-1337P-201ENST00000516525 95 ntBASIC1.76□□□□□ -2.13
CTCFP49711 RNA5SP476-201ENST00000516613 103 ntBASIC1.76□□□□□ -2.13
CTCFP49711 RNU7-110P-201ENST00000516891 62 ntBASIC1.76□□□□□ -2.13
CTCFP49711 RPL21P9-201ENST00000556149 474 ntBASIC1.76□□□□□ -2.13
CTCFP49711 MIR4709-201ENST00000577272 72 ntBASIC1.76□□□□□ -2.13
CTCFP49711 AC113195.1-201ENST00000579952 141 ntBASIC1.76□□□□□ -2.13
CTCFP49711 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
CTCFP49711 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
CTCFP49711 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC1.75□□□□□ -2.13
CTCFP49711 Y_RNA.329-201ENST00000365209 107 ntBASIC1.75□□□□□ -2.13
CTCFP49711 Y_RNA.380-201ENST00000365663 111 ntBASIC1.75□□□□□ -2.13
CTCFP49711 RNU6-997P-201ENST00000384725 107 ntBASIC1.75□□□□□ -2.13
CTCFP49711 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.75□□□□□ -2.13
CTCFP49711 COX6CP10-201ENST00000416832 224 ntBASIC1.75□□□□□ -2.13
CTCFP49711 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC1.75□□□□□ -2.13
CTCFP49711 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC1.75□□□□□ -2.13
CTCFP49711 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC1.75□□□□□ -2.13
CTCFP49711 RNU6-897P-201ENST00000517135 105 ntBASIC1.75□□□□□ -2.13
CTCFP49711 MIR4300-201ENST00000581016 96 ntBASIC1.75□□□□□ -2.13
CTCFP49711 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC1.75□□□□□ -2.13
CTCFP49711 TTK-211ENST00000627129 240 ntTSL 5 BASIC1.75□□□□□ -2.13
CTCFP49711 Y_RNA.172-201ENST00000363765 102 ntBASIC1.74□□□□□ -2.13
CTCFP49711 Y_RNA.183-201ENST00000363882 113 ntBASIC1.74□□□□□ -2.13
CTCFP49711 RNU6-950P-201ENST00000384651 107 ntBASIC1.74□□□□□ -2.13
CTCFP49711 MIR194-1-201ENST00000384892 85 ntBASIC1.74□□□□□ -2.13
CTCFP49711 RNU6-440P-201ENST00000390882 105 ntBASIC1.74□□□□□ -2.13
CTCFP49711 MIR1267-201ENST00000408723 78 ntBASIC1.74□□□□□ -2.13
CTCFP49711 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC1.74□□□□□ -2.13
CTCFP49711 snoU13.9-201ENST00000458927 103 ntBASIC1.74□□□□□ -2.13
CTCFP49711 RNU7-34P-201ENST00000459394 64 ntBASIC1.74□□□□□ -2.13
CTCFP49711 RNU6-341P-201ENST00000516973 96 ntBASIC1.74□□□□□ -2.13
CTCFP49711 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC1.74□□□□□ -2.13
CTCFP49711 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC1.74□□□□□ -2.13
CTCFP49711 AP001485.1-201ENST00000604799 199 ntBASIC1.74□□□□□ -2.13
CTCFP49711 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC1.74□□□□□ -2.13
CTCFP49711 AC100821.1-201ENST00000523153 2479 ntBASIC1.74□□□□□ -2.13
CTCFP49711 Y_RNA.105-201ENST00000363182 111 ntBASIC1.73□□□□□ -2.13
CTCFP49711 Y_RNA.286-201ENST00000364813 102 ntBASIC1.73□□□□□ -2.13
CTCFP49711 SNORD116-13-201ENST00000384408 92 ntBASIC1.73□□□□□ -2.13
CTCFP49711 RNU6-1031P-201ENST00000384773 107 ntBASIC1.73□□□□□ -2.13
CTCFP49711 RNU11-5P-201ENST00000391216 129 ntBASIC1.73□□□□□ -2.13
CTCFP49711 RNA5SP511-201ENST00000410487 115 ntBASIC1.73□□□□□ -2.13
CTCFP49711 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.73□□□□□ -2.13
CTCFP49711 DEFB117-201ENST00000602356 141 ntBASIC1.73□□□□□ -2.13
CTCFP49711 AL355297.3-201ENST00000604082 446 ntBASIC1.73□□□□□ -2.13
CTCFP49711 AC021506.2-201ENST00000612354 169 ntBASIC1.73□□□□□ -2.13
CTCFP49711 SNORD33-201ENST00000362761 85 ntBASIC1.72□□□□□ -2.13
CTCFP49711 RNU6-694P-201ENST00000364071 147 ntBASIC1.72□□□□□ -2.13
CTCFP49711 RNU6-136P-201ENST00000384663 107 ntBASIC1.72□□□□□ -2.13
CTCFP49711 RNU6-21P-201ENST00000384710 107 ntBASIC1.72□□□□□ -2.13
CTCFP49711 SNORD115-46-201ENST00000390982 71 ntBASIC1.72□□□□□ -2.13
CTCFP49711 RN7SKP200-201ENST00000410564 320 ntBASIC1.72□□□□□ -2.13
CTCFP49711 AL162725.1-201ENST00000435405 301 ntBASIC1.72□□□□□ -2.13
CTCFP49711 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.72□□□□□ -2.13
CTCFP49711 MIR376A1-201ENST00000616574 68 ntBASIC1.72□□□□□ -2.13
CTCFP49711 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.71□□□□□ -2.14
CTCFP49711 SNORA1B-201ENST00000362535 133 ntBASIC1.71□□□□□ -2.14
CTCFP49711 Y_RNA.153-201ENST00000363615 91 ntBASIC1.71□□□□□ -2.14
CTCFP49711 RNU6-639P-201ENST00000384074 107 ntBASIC1.71□□□□□ -2.14
CTCFP49711 RNU6-121P-201ENST00000410525 99 ntBASIC1.71□□□□□ -2.14
CTCFP49711 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC1.71□□□□□ -2.14
CTCFP49711 ELOCP20-201ENST00000422460 345 ntBASIC1.71□□□□□ -2.14
CTCFP49711 HAR1A.1-201ENST00000459583 118 ntBASIC1.71□□□□□ -2.14
CTCFP49711 RNU6-1291P-201ENST00000516591 104 ntBASIC1.71□□□□□ -2.14
CTCFP49711 RNU6-1096P-201ENST00000517089 102 ntBASIC1.71□□□□□ -2.14
CTCFP49711 AC131281.1-201ENST00000522984 164 ntBASIC1.71□□□□□ -2.14
CTCFP49711 AP003072.1-201ENST00000531740 145 ntBASIC1.71□□□□□ -2.14
CTCFP49711 SNORD113-5-201ENST00000607261 78 ntBASIC1.71□□□□□ -2.14
CTCFP49711 AC004832.4-201ENST00000608952 331 ntBASIC1.71□□□□□ -2.14
CTCFP49711 MIR302D-201ENST00000362275 68 ntBASIC1.7□□□□□ -2.14
CTCFP49711 Y_RNA.214-201ENST00000364201 112 ntBASIC1.7□□□□□ -2.14
CTCFP49711 Y_RNA.267-201ENST00000364679 109 ntBASIC1.7□□□□□ -2.14
CTCFP49711 Y_RNA.276-201ENST00000364732 109 ntBASIC1.7□□□□□ -2.14
CTCFP49711 Y_RNA.326-201ENST00000365176 113 ntBASIC1.7□□□□□ -2.14
CTCFP49711 SNORA70.7-201ENST00000384159 133 ntBASIC1.7□□□□□ -2.14
CTCFP49711 RNU6-102P-201ENST00000384485 104 ntBASIC1.7□□□□□ -2.14
CTCFP49711 MIR520G-201ENST00000385064 90 ntBASIC1.7□□□□□ -2.14
CTCFP49711 RNU6-985P-201ENST00000410182 104 ntBASIC1.7□□□□□ -2.14
CTCFP49711 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC1.7□□□□□ -2.14
CTCFP49711 SEPT14P8-201ENST00000508026 178 ntBASIC1.7□□□□□ -2.14
CTCFP49711 RNU6-764P-201ENST00000516396 105 ntBASIC1.7□□□□□ -2.14
CTCFP49711 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.7□□□□□ -2.14
CTCFP49711 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC1.69□□□□□ -2.14
CTCFP49711 SNORD113-8-201ENST00000363497 74 ntBASIC1.69□□□□□ -2.14
CTCFP49711 Y_RNA.222-201ENST00000364264 102 ntBASIC1.69□□□□□ -2.14
CTCFP49711 MIR562-201ENST00000384894 95 ntBASIC1.69□□□□□ -2.14
CTCFP49711 RPS20P10-201ENST00000451209 253 ntBASIC1.69□□□□□ -2.14
CTCFP49711 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC1.69□□□□□ -2.14
CTCFP49711 RNU6-496P-201ENST00000516145 99 ntBASIC1.69□□□□□ -2.14
CTCFP49711 AP002004.2-201ENST00000531656 154 ntBASIC1.69□□□□□ -2.14
CTCFP49711 AC015688.6-201ENST00000577737 104 ntBASIC1.69□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 105.8 ms