Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 RNU4-80P-201ENST00000363200 141 ntBASIC1.72□□□□□ -2.13
HOXC9P31274 Y_RNA.191-201ENST00000363972 113 ntBASIC1.72□□□□□ -2.13
HOXC9P31274 SNORD114-22-201ENST00000365423 72 ntBASIC1.72□□□□□ -2.13
HOXC9P31274 RNU6-713P-201ENST00000384761 107 ntBASIC1.72□□□□□ -2.13
HOXC9P31274 MIR489-201ENST00000384923 84 ntBASIC1.72□□□□□ -2.13
HOXC9P31274 RNA5SP511-201ENST00000410487 115 ntBASIC1.72□□□□□ -2.13
HOXC9P31274 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.72□□□□□ -2.13
HOXC9P31274 AL731563.1-201ENST00000442202 214 ntBASIC1.72□□□□□ -2.13
HOXC9P31274 AL118496.2-201ENST00000448300 230 ntBASIC1.72□□□□□ -2.13
HOXC9P31274 RPS27P1-201ENST00000450552 247 ntBASIC1.72□□□□□ -2.13
HOXC9P31274 RNU6-1143P-201ENST00000516125 104 ntBASIC1.72□□□□□ -2.13
HOXC9P31274 RNU6-1291P-201ENST00000516591 104 ntBASIC1.72□□□□□ -2.13
HOXC9P31274 RNU6-570P-201ENST00000517051 105 ntBASIC1.72□□□□□ -2.13
HOXC9P31274 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC1.72□□□□□ -2.13
HOXC9P31274 AC008269.2-201ENST00000561915 1105 ntBASIC1.72□□□□□ -2.13
HOXC9P31274 MIR3122-201ENST00000577243 73 ntBASIC1.72□□□□□ -2.13
HOXC9P31274 MIR4452-201ENST00000583004 71 ntBASIC1.72□□□□□ -2.13
HOXC9P31274 Y_RNA.581-201ENST00000391017 97 ntBASIC1.71□□□□□ -2.14
HOXC9P31274 RNU6-1109P-201ENST00000391187 107 ntBASIC1.71□□□□□ -2.14
HOXC9P31274 RNU6-710P-201ENST00000410424 105 ntBASIC1.71□□□□□ -2.14
HOXC9P31274 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.71□□□□□ -2.14
HOXC9P31274 COX6CP10-201ENST00000416832 224 ntBASIC1.71□□□□□ -2.14
HOXC9P31274 AC024067.1-201ENST00000426199 223 ntBASIC1.71□□□□□ -2.14
HOXC9P31274 HSPE1P13-201ENST00000451143 297 ntBASIC1.71□□□□□ -2.14
HOXC9P31274 AC233266.1-201ENST00000454518 96 ntBASIC1.71□□□□□ -2.14
HOXC9P31274 RNA5SP481-201ENST00000516814 122 ntBASIC1.71□□□□□ -2.14
HOXC9P31274 SNORA4-201ENST00000584302 138 ntBASIC1.71□□□□□ -2.14
HOXC9P31274 AC136443.5-201ENST00000603741 370 ntBASIC1.71□□□□□ -2.14
HOXC9P31274 AC242852.1-201ENST00000612151 96 ntBASIC1.71□□□□□ -2.14
HOXC9P31274 AC244015.1-201ENST00000622301 99 ntBASIC1.71□□□□□ -2.14
HOXC9P31274 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.71□□□□□ -2.14
HOXC9P31274 RNU6-290P-201ENST00000365212 101 ntBASIC1.7□□□□□ -2.14
HOXC9P31274 Y_RNA.541-201ENST00000384640 113 ntBASIC1.7□□□□□ -2.14
HOXC9P31274 Y_RNA.569-201ENST00000384749 103 ntBASIC1.7□□□□□ -2.14
HOXC9P31274 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.7□□□□□ -2.14
HOXC9P31274 snoU13.27-201ENST00000459278 104 ntBASIC1.7□□□□□ -2.14
HOXC9P31274 RNU7-94P-201ENST00000459576 63 ntBASIC1.7□□□□□ -2.14
HOXC9P31274 RNU6-1096P-201ENST00000517089 102 ntBASIC1.7□□□□□ -2.14
HOXC9P31274 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC1.7□□□□□ -2.14
HOXC9P31274 AL929325.1-201ENST00000603096 117 ntBASIC1.7□□□□□ -2.14
HOXC9P31274 AC004832.4-201ENST00000608952 331 ntBASIC1.7□□□□□ -2.14
HOXC9P31274 Y_RNA.16-201ENST00000362421 102 ntBASIC1.69□□□□□ -2.14
HOXC9P31274 RNU6-1309P-201ENST00000363305 108 ntBASIC1.69□□□□□ -2.14
HOXC9P31274 Y_RNA.341-201ENST00000365341 102 ntBASIC1.69□□□□□ -2.14
HOXC9P31274 Y_RNA.418-201ENST00000384029 102 ntBASIC1.69□□□□□ -2.14
HOXC9P31274 RNU6-440P-201ENST00000390882 105 ntBASIC1.69□□□□□ -2.14
HOXC9P31274 RNU11-5P-201ENST00000391216 129 ntBASIC1.69□□□□□ -2.14
HOXC9P31274 RNU6ATAC19P-201ENST00000408096 110 ntBASIC1.69□□□□□ -2.14
HOXC9P31274 Y_RNA.621-201ENST00000411065 96 ntBASIC1.69□□□□□ -2.14
HOXC9P31274 RPS20P10-201ENST00000451209 253 ntBASIC1.69□□□□□ -2.14
HOXC9P31274 RNA5SP445-201ENST00000515889 115 ntBASIC1.69□□□□□ -2.14
HOXC9P31274 SNORA31.10-201ENST00000516482 106 ntBASIC1.69□□□□□ -2.14
HOXC9P31274 AC068338.1-201ENST00000565567 176 ntBASIC1.69□□□□□ -2.14
HOXC9P31274 MIR4709-201ENST00000577272 72 ntBASIC1.69□□□□□ -2.14
HOXC9P31274 MIR8054-201ENST00000620877 86 ntBASIC1.69□□□□□ -2.14
HOXC9P31274 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
HOXC9P31274 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.68□□□□□ -2.14
HOXC9P31274 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.68□□□□□ -2.14
HOXC9P31274 Y_RNA.84-201ENST00000363011 104 ntBASIC1.68□□□□□ -2.14
HOXC9P31274 Y_RNA.122-201ENST00000363331 96 ntBASIC1.68□□□□□ -2.14
HOXC9P31274 RNU6-414P-201ENST00000363705 104 ntBASIC1.68□□□□□ -2.14
HOXC9P31274 AL162725.1-201ENST00000435405 301 ntBASIC1.68□□□□□ -2.14
HOXC9P31274 HSPE1P21-201ENST00000438283 308 ntBASIC1.68□□□□□ -2.14
HOXC9P31274 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC1.68□□□□□ -2.14
HOXC9P31274 RNU2-56P-201ENST00000516826 190 ntBASIC1.68□□□□□ -2.14
HOXC9P31274 AC091178.2-201ENST00000584401 117 ntBASIC1.68□□□□□ -2.14
HOXC9P31274 AC103810.8-201ENST00000607347 118 ntBASIC1.68□□□□□ -2.14
HOXC9P31274 AC068647.2-201ENST00000637380 353 ntBASIC1.68□□□□□ -2.14
HOXC9P31274 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
HOXC9P31274 Y_RNA.574-201ENST00000384766 95 ntBASIC1.67□□□□□ -2.14
HOXC9P31274 MIR520G-201ENST00000385064 90 ntBASIC1.67□□□□□ -2.14
HOXC9P31274 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.67□□□□□ -2.14
HOXC9P31274 SNORA53-201ENST00000391141 249 ntBASIC1.67□□□□□ -2.14
HOXC9P31274 MIR548F4-201ENST00000408515 105 ntBASIC1.67□□□□□ -2.14
HOXC9P31274 RPL31P63-201ENST00000422565 375 ntBASIC1.67□□□□□ -2.14
HOXC9P31274 AL135790.2-201ENST00000437701 267 ntBASIC1.67□□□□□ -2.14
HOXC9P31274 STAG3L5P-204ENST00000443759 179 ntBASIC1.67□□□□□ -2.14
HOXC9P31274 RPS4XP11-201ENST00000446897 772 ntBASIC1.67□□□□□ -2.14
HOXC9P31274 HMGN1P10-201ENST00000474557 553 ntBASIC1.67□□□□□ -2.14
HOXC9P31274 RNU6-1045P-201ENST00000516321 107 ntBASIC1.67□□□□□ -2.14
HOXC9P31274 SCARNA24.2-201ENST00000516968 130 ntBASIC1.67□□□□□ -2.14
HOXC9P31274 SNORA44.1-201ENST00000517031 108 ntBASIC1.67□□□□□ -2.14
HOXC9P31274 AL117187.1-201ENST00000555482 181 ntBASIC1.67□□□□□ -2.14
HOXC9P31274 AC037487.3-201ENST00000606668 112 ntBASIC1.67□□□□□ -2.14
HOXC9P31274 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC1.67□□□□□ -2.14
HOXC9P31274 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.67□□□□□ -2.14
HOXC9P31274 AC100821.1-201ENST00000523153 2479 ntBASIC1.67□□□□□ -2.14
HOXC9P31274 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.67□□□□□ -2.14
HOXC9P31274 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
HOXC9P31274 SNORA25.1-201ENST00000362326 128 ntBASIC1.66□□□□□ -2.14
HOXC9P31274 SNORA1B-201ENST00000362535 133 ntBASIC1.66□□□□□ -2.14
HOXC9P31274 Y_RNA.265-201ENST00000364677 108 ntBASIC1.66□□□□□ -2.14
HOXC9P31274 RNU1-93P-201ENST00000364704 169 ntBASIC1.66□□□□□ -2.14
HOXC9P31274 RNU6-514P-201ENST00000384208 107 ntBASIC1.66□□□□□ -2.14
HOXC9P31274 RNU6-950P-201ENST00000384651 107 ntBASIC1.66□□□□□ -2.14
HOXC9P31274 MIR758-201ENST00000390227 88 ntBASIC1.66□□□□□ -2.14
HOXC9P31274 RNU6-360P-201ENST00000390944 104 ntBASIC1.66□□□□□ -2.14
HOXC9P31274 RN7SKP200-201ENST00000410564 320 ntBASIC1.66□□□□□ -2.14
HOXC9P31274 MTCO1P5-201ENST00000433573 344 ntBASIC1.66□□□□□ -2.14
HOXC9P31274 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.66□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 105.5 ms