| MT-ND2 | P03891 | KIAA1551-201 | ENST00000312561 | 6230 nt | APPRIS P1 TSL 1 (best) BASIC | 1.21 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | SNORA2.2-201 | ENST00000365473 | 135 nt | BASIC | 1.2 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | MIR891A-201 | ENST00000401237 | 79 nt | BASIC | 1.2 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | RNU6-496P-201 | ENST00000516145 | 99 nt | BASIC | 1.2 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | MIR4680-201 | ENST00000580906 | 66 nt | BASIC | 1.2 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | POLR3GP1-201 | ENST00000594073 | 261 nt | BASIC | 1.2 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | AL356055.1-201 | ENST00000602528 | 446 nt | BASIC | 1.2 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | AL355297.3-201 | ENST00000604082 | 446 nt | BASIC | 1.2 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | AP003357.1-201 | ENST00000604497 | 148 nt | BASIC | 1.2 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | KLRA1P-203 | ENST00000535939 | 2353 nt | TSL 1 (best) BASIC | 1.19 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | Y_RNA.105-201 | ENST00000363182 | 111 nt | BASIC | 1.19 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | RNU4-80P-201 | ENST00000363200 | 141 nt | BASIC | 1.19 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | RNU6-163P-201 | ENST00000384396 | 106 nt | BASIC | 1.19 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | MIR522-201 | ENST00000385071 | 87 nt | BASIC | 1.19 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | RNU6-1248P-201 | ENST00000391096 | 64 nt | BASIC | 1.19 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | Y_RNA.602-201 | ENST00000410535 | 92 nt | BASIC | 1.19 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | AC069079.1-201 | ENST00000419889 | 400 nt | TSL 3 BASIC | 1.19 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | HSPE1P25-201 | ENST00000455484 | 251 nt | BASIC | 1.19 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | RNU6-917P-201 | ENST00000516294 | 104 nt | BASIC | 1.19 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | RNU6-922P-201 | ENST00000516753 | 99 nt | BASIC | 1.19 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | AC136628.3-201 | ENST00000521868 | 290 nt | BASIC | 1.19 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | AC113195.1-201 | ENST00000579952 | 141 nt | BASIC | 1.19 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | CTDSPL2-202 | ENST00000558373 | 4255 nt | TSL 1 (best) BASIC | 1.18 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | RNU4-90P-201 | ENST00000362773 | 141 nt | BASIC | 1.18 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | Y_RNA.214-201 | ENST00000364201 | 112 nt | BASIC | 1.18 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | Y_RNA.276-201 | ENST00000364732 | 109 nt | BASIC | 1.18 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | U8.7-201 | ENST00000364940 | 136 nt | BASIC | 1.18 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | RNU6-1227P-201 | ENST00000383981 | 107 nt | BASIC | 1.18 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | Y_RNA.418-201 | ENST00000384029 | 102 nt | BASIC | 1.18 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | RNU6-102P-201 | ENST00000384485 | 104 nt | BASIC | 1.18 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | Y_RNA.527-201 | ENST00000384573 | 102 nt | BASIC | 1.18 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | RNU6-121P-201 | ENST00000410525 | 99 nt | BASIC | 1.18 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | AL135923.1-201 | ENST00000413066 | 196 nt | TSL 3 BASIC | 1.18 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | ELOCP20-201 | ENST00000422460 | 345 nt | BASIC | 1.18 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | AC005534.2-201 | ENST00000431047 | 433 nt | BASIC | 1.18 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | AL353747.2-201 | ENST00000439207 | 205 nt | TSL 3 BASIC | 1.18 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | AC104332.1-201 | ENST00000440471 | 797 nt | BASIC | 1.18 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | HMGN1P7-201 | ENST00000491722 | 313 nt | BASIC | 1.18 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | AC114811.1-201 | ENST00000507207 | 168 nt | BASIC | 1.18 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | RNU6-322P-201 | ENST00000516010 | 103 nt | BASIC | 1.18 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | RN7SKP179-201 | ENST00000516126 | 217 nt | BASIC | 1.18 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | RNU6-191P-201 | ENST00000516295 | 94 nt | BASIC | 1.18 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | RNU7-115P-201 | ENST00000516433 | 55 nt | BASIC | 1.18 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | RN7SKP88-201 | ENST00000516847 | 250 nt | BASIC | 1.18 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | SNORA40.15-201 | ENST00000516884 | 107 nt | BASIC | 1.18 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | RNU6-165P-201 | ENST00000517170 | 99 nt | BASIC | 1.18 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | AC024405.2-202 | ENST00000532731 | 184 nt | BASIC | 1.18 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | GHRLOS.1-201 | ENST00000610995 | 70 nt | BASIC | 1.18 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | 7SK.8-201 | ENST00000612110 | 250 nt | BASIC | 1.18 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | 7SK.11-201 | ENST00000615477 | 250 nt | BASIC | 1.18 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | 7SK.13-201 | ENST00000622040 | 250 nt | BASIC | 1.18 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | CEP57L1-216 | ENST00000521522 | 2259 nt | TSL 5 BASIC | 1.18 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | Y_RNA.136-201 | ENST00000363444 | 102 nt | BASIC | 1.17 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | RNU6-770P-201 | ENST00000363929 | 105 nt | BASIC | 1.17 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | SNORA25.8-201 | ENST00000364831 | 128 nt | BASIC | 1.17 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | SNORA33.2-201 | ENST00000365413 | 134 nt | BASIC | 1.17 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | SNORD41-201 | ENST00000386967 | 70 nt | BASIC | 1.17 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | Y_RNA.581-201 | ENST00000391017 | 97 nt | BASIC | 1.17 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | AL451046.2-201 | ENST00000403074 | 277 nt | BASIC | 1.17 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | RNU6ATAC19P-201 | ENST00000408096 | 110 nt | BASIC | 1.17 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | PIGPP3-201 | ENST00000425307 | 415 nt | BASIC | 1.17 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | DYNLT3P2-201 | ENST00000442517 | 295 nt | BASIC | 1.17 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | AC117454.1-201 | ENST00000491120 | 168 nt | BASIC | 1.17 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | RNU6-1137P-201 | ENST00000517073 | 99 nt | BASIC | 1.17 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | AC131281.1-201 | ENST00000522984 | 164 nt | BASIC | 1.17 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | AL161670.1-201 | ENST00000554348 | 137 nt | BASIC | 1.17 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | AC127455.1-201 | ENST00000565496 | 145 nt | BASIC | 1.17 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | AC044792.1-201 | ENST00000593294 | 196 nt | BASIC | 1.17 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | GNAS-AS1_4.1-201 | ENST00000616546 | 112 nt | BASIC | 1.17 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | MIR548AY-201 | ENST00000617669 | 107 nt | BASIC | 1.17 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | MIR8065-201 | ENST00000620577 | 100 nt | BASIC | 1.17 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | UBE3A-225 | ENST00000636667 | 5726 nt | TSL 5 BASIC | 1.17 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | ZNF260-203 | ENST00000588993 | 4174 nt | APPRIS P1 TSL 1 (best) BASIC | 1.16 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | RNU6-801P-201 | ENST00000364087 | 105 nt | BASIC | 1.16 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | Y_RNA.203-201 | ENST00000364106 | 102 nt | BASIC | 1.16 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | Y_RNA.569-201 | ENST00000384749 | 103 nt | BASIC | 1.16 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | MIR526A1-201 | ENST00000384897 | 85 nt | BASIC | 1.16 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | MIR1289-2-201 | ENST00000408360 | 111 nt | BASIC | 1.16 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | MLLT10P1-201 | ENST00000418346 | 262 nt | BASIC | 1.16 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | LINC01399-202 | ENST00000458450 | 244 nt | BASIC | 1.16 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | SNORD13-201 | ENST00000459299 | 104 nt | BASIC | 1.16 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | AC110009.1-201 | ENST00000512965 | 451 nt | TSL 5 BASIC | 1.16 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | AC019288.1-201 | ENST00000557918 | 224 nt | BASIC | 1.16 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | AL645939.4-201 | ENST00000604495 | 135 nt | BASIC | 1.16 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | NAA50-211 | ENST00000630058 | 177 nt | TSL 5 BASIC | 1.16 | □□□□□ -2.22 | | |
| MT-ND2 | P03891 | Y_RNA.19-201 | ENST00000362462 | 99 nt | BASIC | 1.15 | □□□□□ -2.23 | | |
| MT-ND2 | P03891 | Y_RNA.152-201 | ENST00000363578 | 100 nt | BASIC | 1.15 | □□□□□ -2.23 | | |
| MT-ND2 | P03891 | Y_RNA.210-201 | ENST00000364161 | 110 nt | BASIC | 1.15 | □□□□□ -2.23 | | |
| MT-ND2 | P03891 | SNORA72.4-201 | ENST00000384174 | 132 nt | BASIC | 1.15 | □□□□□ -2.23 | | |
| MT-ND2 | P03891 | MIR618-201 | ENST00000385287 | 98 nt | BASIC | 1.15 | □□□□□ -2.23 | | |
| MT-ND2 | P03891 | TRAJ48-201 | ENST00000390489 | 63 nt | APPRIS P1 BASIC | 1.15 | □□□□□ -2.23 | | |
| MT-ND2 | P03891 | RNU2-14P-201 | ENST00000411053 | 191 nt | BASIC | 1.15 | □□□□□ -2.23 | | |
| MT-ND2 | P03891 | AJ239322.2-201 | ENST00000421696 | 575 nt | TSL 5 BASIC | 1.15 | □□□□□ -2.23 | | |
| MT-ND2 | P03891 | SNRPGP10-201 | ENST00000432323 | 225 nt | BASIC | 1.15 | □□□□□ -2.23 | | |
| MT-ND2 | P03891 | RNU7-141P-201 | ENST00000459304 | 62 nt | BASIC | 1.15 | □□□□□ -2.23 | | |
| MT-ND2 | P03891 | snoU13.26-201 | ENST00000459452 | 105 nt | BASIC | 1.15 | □□□□□ -2.23 | | |
| MT-ND2 | P03891 | RPL23AP54-201 | ENST00000495129 | 419 nt | BASIC | 1.15 | □□□□□ -2.23 | | |
| MT-ND2 | P03891 | RNY3P15-201 | ENST00000516297 | 97 nt | BASIC | 1.15 | □□□□□ -2.23 | | |
| MT-ND2 | P03891 | RNU6-1153P-201 | ENST00000516760 | 105 nt | BASIC | 1.15 | □□□□□ -2.23 | | |
| MT-ND2 | P03891 | AC107973.1-201 | ENST00000530249 | 576 nt | TSL 4 BASIC | 1.15 | □□□□□ -2.23 | | |