Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AC025033.1-201ENST00000463883 194 ntBASIC1.8□□□□□ -2.12
LMX1BO60663 RPS27P22-201ENST00000478056 241 ntBASIC1.8□□□□□ -2.12
LMX1BO60663 AC010409.1-201ENST00000487382 476 ntBASIC1.8□□□□□ -2.12
LMX1BO60663 AC011406.1-201ENST00000512440 370 ntBASIC1.8□□□□□ -2.12
LMX1BO60663 SNORA4.4-201ENST00000515921 135 ntBASIC1.8□□□□□ -2.12
LMX1BO60663 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC1.8□□□□□ -2.12
LMX1BO60663 CYCSP26-201ENST00000534107 320 ntBASIC1.8□□□□□ -2.12
LMX1BO60663 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC1.8□□□□□ -2.12
LMX1BO60663 MIR4438-201ENST00000585271 93 ntBASIC1.8□□□□□ -2.12
LMX1BO60663 SNRPGP19-201ENST00000603826 189 ntBASIC1.8□□□□□ -2.12
LMX1BO60663 Y_RNA.802-201ENST00000614892 130 ntBASIC1.8□□□□□ -2.12
LMX1BO60663 MIR338-201ENST00000636369 67 ntBASIC1.8□□□□□ -2.12
LMX1BO60663 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC1.8□□□□□ -2.12
LMX1BO60663 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC1.8□□□□□ -2.12
LMX1BO60663 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC1.8□□□□□ -2.12
LMX1BO60663 snoU2-30.2-201ENST00000362805 70 ntBASIC1.79□□□□□ -2.12
LMX1BO60663 RNU6-969P-201ENST00000383900 105 ntBASIC1.79□□□□□ -2.12
LMX1BO60663 RNU6-144P-201ENST00000383951 107 ntBASIC1.79□□□□□ -2.12
LMX1BO60663 RNU6-746P-201ENST00000384112 109 ntBASIC1.79□□□□□ -2.12
LMX1BO60663 RNU1-148P-201ENST00000384472 162 ntBASIC1.79□□□□□ -2.12
LMX1BO60663 SNORA8.3-201ENST00000384679 139 ntBASIC1.79□□□□□ -2.12
LMX1BO60663 MT-TT-201ENST00000387460 66 ntBASIC1.79□□□□□ -2.12
LMX1BO60663 SNORA48.3-201ENST00000391081 134 ntBASIC1.79□□□□□ -2.12
LMX1BO60663 HSPE1P21-201ENST00000438283 308 ntBASIC1.79□□□□□ -2.12
LMX1BO60663 RNU1-131P-201ENST00000458943 161 ntBASIC1.79□□□□□ -2.12
LMX1BO60663 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC1.79□□□□□ -2.12
LMX1BO60663 RNU6-1041P-201ENST00000516254 102 ntBASIC1.79□□□□□ -2.12
LMX1BO60663 RNU1-40P-201ENST00000516816 164 ntBASIC1.79□□□□□ -2.12
LMX1BO60663 RNU1-97P-201ENST00000516872 164 ntBASIC1.79□□□□□ -2.12
LMX1BO60663 MIR3169-201ENST00000578032 83 ntBASIC1.79□□□□□ -2.12
LMX1BO60663 MIR3144-201ENST00000579460 79 ntBASIC1.79□□□□□ -2.12
LMX1BO60663 MIR5688-201ENST00000580619 83 ntBASIC1.79□□□□□ -2.12
LMX1BO60663 POLR3GP1-201ENST00000594073 261 ntBASIC1.79□□□□□ -2.12
LMX1BO60663 AC108706.1-201ENST00000611053 297 ntBASIC1.79□□□□□ -2.12
LMX1BO60663 Y_RNA.140-201ENST00000363474 103 ntBASIC1.78□□□□□ -2.12
LMX1BO60663 Y_RNA.229-201ENST00000364347 113 ntBASIC1.78□□□□□ -2.12
LMX1BO60663 RNU6-275P-201ENST00000364910 107 ntBASIC1.78□□□□□ -2.12
LMX1BO60663 Y_RNA.338-201ENST00000365320 114 ntBASIC1.78□□□□□ -2.12
LMX1BO60663 RNU6-187P-201ENST00000384139 106 ntBASIC1.78□□□□□ -2.12
LMX1BO60663 RNU6-136P-201ENST00000384663 107 ntBASIC1.78□□□□□ -2.12
LMX1BO60663 RNU6-417P-201ENST00000384712 107 ntBASIC1.78□□□□□ -2.12
LMX1BO60663 MIR616-201ENST00000385293 97 ntBASIC1.78□□□□□ -2.12
LMX1BO60663 RNA5SP467-201ENST00000391274 118 ntBASIC1.78□□□□□ -2.12
LMX1BO60663 SNORA26.9-201ENST00000391322 122 ntBASIC1.78□□□□□ -2.12
LMX1BO60663 MIR548M-201ENST00000408260 86 ntBASIC1.78□□□□□ -2.12
LMX1BO60663 EBAG9P1-201ENST00000418955 543 ntBASIC1.78□□□□□ -2.12
LMX1BO60663 RPS4XP11-201ENST00000446897 772 ntBASIC1.78□□□□□ -2.12
LMX1BO60663 AC245102.2-201ENST00000448956 180 ntBASIC1.78□□□□□ -2.12
LMX1BO60663 RN7SKP164-201ENST00000516138 266 ntBASIC1.78□□□□□ -2.12
LMX1BO60663 RNU6-561P-201ENST00000516222 102 ntBASIC1.78□□□□□ -2.12
LMX1BO60663 RNU7-172P-201ENST00000517125 64 ntBASIC1.78□□□□□ -2.12
LMX1BO60663 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC1.78□□□□□ -2.12
LMX1BO60663 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.78□□□□□ -2.12
LMX1BO60663 MIR3133-201ENST00000583157 78 ntBASIC1.78□□□□□ -2.12
LMX1BO60663 AC091178.2-201ENST00000584401 117 ntBASIC1.78□□□□□ -2.12
LMX1BO60663 AL021707.8-201ENST00000609428 183 ntBASIC1.78□□□□□ -2.12
LMX1BO60663 AL353149.1-201ENST00000610667 244 ntBASIC1.78□□□□□ -2.12
LMX1BO60663 AC104465.1-201ENST00000611365 139 ntBASIC1.78□□□□□ -2.12
LMX1BO60663 Y_RNA.783-201ENST00000613546 102 ntBASIC1.78□□□□□ -2.12
LMX1BO60663 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC1.78□□□□□ -2.12
LMX1BO60663 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
LMX1BO60663 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
LMX1BO60663 Y_RNA.23-201ENST00000362496 106 ntBASIC1.77□□□□□ -2.13
LMX1BO60663 RNU6-674P-201ENST00000363831 107 ntBASIC1.77□□□□□ -2.13
LMX1BO60663 Y_RNA.182-201ENST00000363880 111 ntBASIC1.77□□□□□ -2.13
LMX1BO60663 RNA5SP493-201ENST00000364115 91 ntBASIC1.77□□□□□ -2.13
LMX1BO60663 RNU6-312P-201ENST00000364629 107 ntBASIC1.77□□□□□ -2.13
LMX1BO60663 RNU6-818P-201ENST00000364837 108 ntBASIC1.77□□□□□ -2.13
LMX1BO60663 RNA5SP37-201ENST00000365420 130 ntBASIC1.77□□□□□ -2.13
LMX1BO60663 Y_RNA.398-201ENST00000383952 99 ntBASIC1.77□□□□□ -2.13
LMX1BO60663 RNU6-578P-201ENST00000390980 103 ntBASIC1.77□□□□□ -2.13
LMX1BO60663 AC019129.1-201ENST00000403786 261 ntBASIC1.77□□□□□ -2.13
LMX1BO60663 RNU6ATAC38P-201ENST00000408119 126 ntBASIC1.77□□□□□ -2.13
LMX1BO60663 EDDM3CP-201ENST00000415977 425 ntBASIC1.77□□□□□ -2.13
LMX1BO60663 AC099677.2-201ENST00000436385 175 ntBASIC1.77□□□□□ -2.13
LMX1BO60663 AC091021.1-201ENST00000468051 388 ntBASIC1.77□□□□□ -2.13
LMX1BO60663 MIR4744-201ENST00000581563 82 ntBASIC1.77□□□□□ -2.13
LMX1BO60663 AL929325.1-201ENST00000603096 117 ntBASIC1.77□□□□□ -2.13
LMX1BO60663 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
LMX1BO60663 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.76□□□□□ -2.13
LMX1BO60663 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC1.76□□□□□ -2.13
LMX1BO60663 RNU6-1130P-201ENST00000365434 107 ntBASIC1.76□□□□□ -2.13
LMX1BO60663 SNORA72-201ENST00000384339 132 ntBASIC1.76□□□□□ -2.13
LMX1BO60663 U8.13-201ENST00000390842 128 ntBASIC1.76□□□□□ -2.13
LMX1BO60663 Y_RNA.580-201ENST00000391004 95 ntBASIC1.76□□□□□ -2.13
LMX1BO60663 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC1.76□□□□□ -2.13
LMX1BO60663 SEPT7P4-201ENST00000437076 306 ntBASIC1.76□□□□□ -2.13
LMX1BO60663 AC245047.8-201ENST00000456455 284 ntBASIC1.76□□□□□ -2.13
LMX1BO60663 AC079804.2-201ENST00000490376 200 ntBASIC1.76□□□□□ -2.13
LMX1BO60663 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.76□□□□□ -2.13
LMX1BO60663 RNU7-200P-201ENST00000516105 62 ntBASIC1.76□□□□□ -2.13
LMX1BO60663 RNU6-346P-201ENST00000516288 111 ntBASIC1.76□□□□□ -2.13
LMX1BO60663 RNU7-116P-201ENST00000516940 62 ntBASIC1.76□□□□□ -2.13
LMX1BO60663 AL137100.2-201ENST00000555786 315 ntBASIC1.76□□□□□ -2.13
LMX1BO60663 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC1.76□□□□□ -2.13
LMX1BO60663 MIR5089-201ENST00000580047 84 ntBASIC1.76□□□□□ -2.13
LMX1BO60663 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.76□□□□□ -2.13
LMX1BO60663 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.76□□□□□ -2.13
LMX1BO60663 RNU6-103P-201ENST00000363686 107 ntBASIC1.75□□□□□ -2.13
LMX1BO60663 RNU4-84P-201ENST00000364200 139 ntBASIC1.75□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 125.2 ms