Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC2.25□□□□□ -2.05
VSX1Q9NZR4 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
VSX1Q9NZR4 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.24□□□□□ -2.05
VSX1Q9NZR4 RNU6-449P-201ENST00000383914 107 ntBASIC2.24□□□□□ -2.05
VSX1Q9NZR4 RNU6-136P-201ENST00000384663 107 ntBASIC2.24□□□□□ -2.05
VSX1Q9NZR4 RNA5SP467-201ENST00000391274 118 ntBASIC2.24□□□□□ -2.05
VSX1Q9NZR4 RNU6-383P-201ENST00000410864 94 ntBASIC2.24□□□□□ -2.05
VSX1Q9NZR4 AC245047.8-201ENST00000456455 284 ntBASIC2.24□□□□□ -2.05
VSX1Q9NZR4 RNU7-121P-201ENST00000516604 62 ntBASIC2.24□□□□□ -2.05
VSX1Q9NZR4 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC2.24□□□□□ -2.05
VSX1Q9NZR4 AC091178.2-201ENST00000584401 117 ntBASIC2.24□□□□□ -2.05
VSX1Q9NZR4 AL031274.2-201ENST00000599419 203 ntBASIC2.24□□□□□ -2.05
VSX1Q9NZR4 AL021707.8-201ENST00000609428 183 ntBASIC2.24□□□□□ -2.05
VSX1Q9NZR4 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
VSX1Q9NZR4 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC2.24□□□□□ -2.05
VSX1Q9NZR4 AC068700.1-201ENST00000565862 3754 ntBASIC2.23□□□□□ -2.05
VSX1Q9NZR4 AL596028.1-201ENST00000326971 197 ntBASIC2.23□□□□□ -2.05
VSX1Q9NZR4 Y_RNA.337-201ENST00000365312 102 ntBASIC2.23□□□□□ -2.05
VSX1Q9NZR4 SNORD50.2-201ENST00000365465 70 ntBASIC2.23□□□□□ -2.05
VSX1Q9NZR4 RNA5SP465-201ENST00000391195 109 ntBASIC2.23□□□□□ -2.05
VSX1Q9NZR4 SNORA26-201ENST00000391286 122 ntBASIC2.23□□□□□ -2.05
VSX1Q9NZR4 MIR1278-201ENST00000408753 81 ntBASIC2.23□□□□□ -2.05
VSX1Q9NZR4 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC2.23□□□□□ -2.05
VSX1Q9NZR4 AL121914.1-201ENST00000450188 156 ntBASIC2.23□□□□□ -2.05
VSX1Q9NZR4 SCARNA8-201ENST00000515924 131 ntBASIC2.23□□□□□ -2.05
VSX1Q9NZR4 RNU7-200P-201ENST00000516105 62 ntBASIC2.23□□□□□ -2.05
VSX1Q9NZR4 RNU7-128P-201ENST00000517247 62 ntBASIC2.23□□□□□ -2.05
VSX1Q9NZR4 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC2.23□□□□□ -2.05
VSX1Q9NZR4 AP002004.2-201ENST00000531656 154 ntBASIC2.23□□□□□ -2.05
VSX1Q9NZR4 MIR4662B-201ENST00000579498 81 ntBASIC2.23□□□□□ -2.05
VSX1Q9NZR4 AC087685.1-201ENST00000587507 141 ntBASIC2.23□□□□□ -2.05
VSX1Q9NZR4 AC006023.1-201ENST00000603944 259 ntBASIC2.23□□□□□ -2.05
VSX1Q9NZR4 JPX_2.1-201ENST00000614161 69 ntBASIC2.23□□□□□ -2.05
VSX1Q9NZR4 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC2.23□□□□□ -2.05
VSX1Q9NZR4 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC2.23□□□□□ -2.05
VSX1Q9NZR4 Y_RNA.170-201ENST00000363746 110 ntBASIC2.22□□□□□ -2.05
VSX1Q9NZR4 Y_RNA.506-201ENST00000384494 102 ntBASIC2.22□□□□□ -2.05
VSX1Q9NZR4 SNORA8-201ENST00000384574 139 ntBASIC2.22□□□□□ -2.05
VSX1Q9NZR4 MIR27B-201ENST00000385129 97 ntBASIC2.22□□□□□ -2.05
VSX1Q9NZR4 SEPT7P4-201ENST00000437076 306 ntBASIC2.22□□□□□ -2.05
VSX1Q9NZR4 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC2.22□□□□□ -2.05
VSX1Q9NZR4 AC007336.1-201ENST00000576365 3828 ntBASIC2.22□□□□□ -2.05
VSX1Q9NZR4 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC2.22□□□□□ -2.05
VSX1Q9NZR4 AC021753.1-201ENST00000635724 168 ntBASIC2.22□□□□□ -2.05
VSX1Q9NZR4 U6.108-201ENST00000637764 58 ntBASIC2.22□□□□□ -2.05
VSX1Q9NZR4 RNU6-862P-201ENST00000362804 105 ntBASIC2.21□□□□□ -2.06
VSX1Q9NZR4 RNU6-1019P-201ENST00000364424 107 ntBASIC2.21□□□□□ -2.06
VSX1Q9NZR4 Y_RNA.572-201ENST00000384757 98 ntBASIC2.21□□□□□ -2.06
VSX1Q9NZR4 MIR15B-201ENST00000385045 98 ntBASIC2.21□□□□□ -2.06
VSX1Q9NZR4 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC2.21□□□□□ -2.06
VSX1Q9NZR4 RNA5SP153-201ENST00000516498 76 ntBASIC2.21□□□□□ -2.06
VSX1Q9NZR4 RNU7-28P-201ENST00000516759 62 ntBASIC2.21□□□□□ -2.06
VSX1Q9NZR4 RNU6-453P-201ENST00000516819 85 ntBASIC2.21□□□□□ -2.06
VSX1Q9NZR4 MIR4319-201ENST00000577285 85 ntBASIC2.21□□□□□ -2.06
VSX1Q9NZR4 AL929325.1-201ENST00000603096 117 ntBASIC2.21□□□□□ -2.06
VSX1Q9NZR4 uc_338.4-201ENST00000616635 176 ntBASIC2.21□□□□□ -2.06
VSX1Q9NZR4 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.21□□□□□ -2.06
VSX1Q9NZR4 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.21□□□□□ -2.06
VSX1Q9NZR4 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.06
VSX1Q9NZR4 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.2□□□□□ -2.06
VSX1Q9NZR4 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.2□□□□□ -2.06
VSX1Q9NZR4 Y_RNA.111-201ENST00000363248 100 ntBASIC2.2□□□□□ -2.06
VSX1Q9NZR4 RNU6-643P-201ENST00000384018 107 ntBASIC2.2□□□□□ -2.06
VSX1Q9NZR4 RNU6-125P-201ENST00000384505 107 ntBASIC2.2□□□□□ -2.06
VSX1Q9NZR4 RNU6-950P-201ENST00000384651 107 ntBASIC2.2□□□□□ -2.06
VSX1Q9NZR4 MIR613-201ENST00000385248 95 ntBASIC2.2□□□□□ -2.06
VSX1Q9NZR4 NDUFB4P4-201ENST00000404822 243 ntBASIC2.2□□□□□ -2.06
VSX1Q9NZR4 RNU5E-9P-201ENST00000411164 104 ntBASIC2.2□□□□□ -2.06
VSX1Q9NZR4 HMGN1P7-201ENST00000491722 313 ntBASIC2.2□□□□□ -2.06
VSX1Q9NZR4 RNA5SP356-201ENST00000515972 94 ntBASIC2.2□□□□□ -2.06
VSX1Q9NZR4 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC2.2□□□□□ -2.06
VSX1Q9NZR4 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC2.2□□□□□ -2.06
VSX1Q9NZR4 MIR3646-201ENST00000578301 84 ntBASIC2.2□□□□□ -2.06
VSX1Q9NZR4 AC069114.2-201ENST00000604699 304 ntBASIC2.2□□□□□ -2.06
VSX1Q9NZR4 AC104465.1-201ENST00000611365 139 ntBASIC2.2□□□□□ -2.06
VSX1Q9NZR4 MIR7106-201ENST00000612419 65 ntBASIC2.2□□□□□ -2.06
VSX1Q9NZR4 5S_rRNA.11-201ENST00000618635 84 ntBASIC2.2□□□□□ -2.06
VSX1Q9NZR4 U4.3-201ENST00000621047 82 ntBASIC2.2□□□□□ -2.06
VSX1Q9NZR4 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
VSX1Q9NZR4 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.2□□□□□ -2.06
VSX1Q9NZR4 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC2.19□□□□□ -2.06
VSX1Q9NZR4 RNU6-1209P-201ENST00000363655 107 ntBASIC2.19□□□□□ -2.06
VSX1Q9NZR4 Y_RNA.796-201ENST00000364268 102 ntBASIC2.19□□□□□ -2.06
VSX1Q9NZR4 Y_RNA.799-201ENST00000364992 102 ntBASIC2.19□□□□□ -2.06
VSX1Q9NZR4 RNU6-804P-201ENST00000384286 107 ntBASIC2.19□□□□□ -2.06
VSX1Q9NZR4 MT-TT-201ENST00000387460 66 ntBASIC2.19□□□□□ -2.06
VSX1Q9NZR4 Y_RNA.587-201ENST00000391210 103 ntBASIC2.19□□□□□ -2.06
VSX1Q9NZR4 Y_RNA.621-201ENST00000411065 96 ntBASIC2.19□□□□□ -2.06
VSX1Q9NZR4 AL163195.1-201ENST00000496941 348 ntBASIC2.19□□□□□ -2.06
VSX1Q9NZR4 RNA5SP320-201ENST00000516263 124 ntBASIC2.19□□□□□ -2.06
VSX1Q9NZR4 RNU6-1299P-201ENST00000516316 100 ntBASIC2.19□□□□□ -2.06
VSX1Q9NZR4 MIR3133-201ENST00000583157 78 ntBASIC2.19□□□□□ -2.06
VSX1Q9NZR4 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.19□□□□□ -2.06
VSX1Q9NZR4 AC062016.1-201ENST00000355719 319 ntBASIC2.18□□□□□ -2.06
VSX1Q9NZR4 SNORA5B-201ENST00000363786 132 ntBASIC2.18□□□□□ -2.06
VSX1Q9NZR4 RNU1-51P-201ENST00000365345 176 ntBASIC2.18□□□□□ -2.06
VSX1Q9NZR4 Y_RNA.343-201ENST00000365354 112 ntBASIC2.18□□□□□ -2.06
VSX1Q9NZR4 RNU6-1138P-201ENST00000365359 106 ntBASIC2.18□□□□□ -2.06
VSX1Q9NZR4 Y_RNA.398-201ENST00000383952 99 ntBASIC2.18□□□□□ -2.06
VSX1Q9NZR4 Y_RNA.400-201ENST00000383963 111 ntBASIC2.18□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 1633.8 ms