Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 MIR515-1-201ENST00000384884 83 ntBASIC3.34□□□□□ -1.87
CCDC87Q9NVE4 MIR627-201ENST00000384979 97 ntBASIC3.34□□□□□ -1.87
CCDC87Q9NVE4 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC3.34□□□□□ -1.87
CCDC87Q9NVE4 AC018634.1-201ENST00000437554 401 ntBASIC3.34□□□□□ -1.87
CCDC87Q9NVE4 AL445687.1-201ENST00000439946 251 ntBASIC3.34□□□□□ -1.87
CCDC87Q9NVE4 AC009238.1-201ENST00000442165 424 ntBASIC3.34□□□□□ -1.87
CCDC87Q9NVE4 AC009237.6-201ENST00000446969 424 ntBASIC3.34□□□□□ -1.87
CCDC87Q9NVE4 AC092991.1-201ENST00000477176 376 ntBASIC3.34□□□□□ -1.87
CCDC87Q9NVE4 RN7SL636P-201ENST00000497504 294 ntBASIC3.34□□□□□ -1.87
CCDC87Q9NVE4 MIR4648-201ENST00000580107 72 ntBASIC3.34□□□□□ -1.87
CCDC87Q9NVE4 AL031274.2-201ENST00000599419 203 ntBASIC3.34□□□□□ -1.87
CCDC87Q9NVE4 JPX_2.1-201ENST00000614161 69 ntBASIC3.34□□□□□ -1.87
CCDC87Q9NVE4 AL365222.1-201ENST00000614661 98 ntBASIC3.34□□□□□ -1.87
CCDC87Q9NVE4 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC3.34□□□□□ -1.88
CCDC87Q9NVE4 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC3.34□□□□□ -1.88
CCDC87Q9NVE4 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
CCDC87Q9NVE4 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC3.33□□□□□ -1.88
CCDC87Q9NVE4 RNU6-1209P-201ENST00000363655 107 ntBASIC3.33□□□□□ -1.88
CCDC87Q9NVE4 Y_RNA.796-201ENST00000364268 102 ntBASIC3.33□□□□□ -1.88
CCDC87Q9NVE4 Y_RNA.799-201ENST00000364992 102 ntBASIC3.33□□□□□ -1.88
CCDC87Q9NVE4 SNORA22C-201ENST00000384614 134 ntBASIC3.33□□□□□ -1.88
CCDC87Q9NVE4 RPL21P3-201ENST00000395517 478 ntBASIC3.33□□□□□ -1.88
CCDC87Q9NVE4 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.33□□□□□ -1.88
CCDC87Q9NVE4 RNU6-1186P-201ENST00000410429 97 ntBASIC3.33□□□□□ -1.88
CCDC87Q9NVE4 RN7SKP123-201ENST00000410732 291 ntBASIC3.33□□□□□ -1.88
CCDC87Q9NVE4 SNORD11-201ENST00000459124 84 ntBASIC3.33□□□□□ -1.88
CCDC87Q9NVE4 AC090142.3-201ENST00000519012 385 ntBASIC3.33□□□□□ -1.88
CCDC87Q9NVE4 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC3.33□□□□□ -1.88
CCDC87Q9NVE4 AC015712.3-201ENST00000559380 164 ntBASIC3.33□□□□□ -1.88
CCDC87Q9NVE4 AC073413.2-201ENST00000604332 360 ntBASIC3.33□□□□□ -1.88
CCDC87Q9NVE4 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC3.33□□□□□ -1.88
CCDC87Q9NVE4 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
CCDC87Q9NVE4 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC3.32□□□□□ -1.88
CCDC87Q9NVE4 AC018630.2-201ENST00000534866 2403 ntBASIC3.32□□□□□ -1.88
CCDC87Q9NVE4 AC108206.1-201ENST00000570186 4159 ntBASIC3.32□□□□□ -1.88
CCDC87Q9NVE4 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC3.32□□□□□ -1.88
CCDC87Q9NVE4 RNU6-1180P-201ENST00000364935 107 ntBASIC3.32□□□□□ -1.88
CCDC87Q9NVE4 RNU6-1138P-201ENST00000365359 106 ntBASIC3.32□□□□□ -1.88
CCDC87Q9NVE4 RNU6-160P-201ENST00000384591 107 ntBASIC3.32□□□□□ -1.88
CCDC87Q9NVE4 Y_RNA.542-201ENST00000384641 111 ntBASIC3.32□□□□□ -1.88
CCDC87Q9NVE4 RNU6-588P-201ENST00000410281 105 ntBASIC3.32□□□□□ -1.88
CCDC87Q9NVE4 RNU2-70P-201ENST00000410718 179 ntBASIC3.32□□□□□ -1.88
CCDC87Q9NVE4 AL358944.1-201ENST00000528537 144 ntBASIC3.32□□□□□ -1.88
CCDC87Q9NVE4 AP001328.1-201ENST00000528550 176 ntBASIC3.32□□□□□ -1.88
CCDC87Q9NVE4 MIR4635-201ENST00000583759 79 ntBASIC3.32□□□□□ -1.88
CCDC87Q9NVE4 AC097639.2-201ENST00000603159 172 ntBASIC3.32□□□□□ -1.88
CCDC87Q9NVE4 MIR338-201ENST00000636369 67 ntBASIC3.32□□□□□ -1.88
CCDC87Q9NVE4 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
CCDC87Q9NVE4 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.31□□□□□ -1.88
CCDC87Q9NVE4 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC3.31□□□□□ -1.88
CCDC87Q9NVE4 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
CCDC87Q9NVE4 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
CCDC87Q9NVE4 SNORA20-201ENST00000384662 132 ntBASIC3.31□□□□□ -1.88
CCDC87Q9NVE4 MIR27B-201ENST00000385129 97 ntBASIC3.31□□□□□ -1.88
CCDC87Q9NVE4 Y_RNA.629-201ENST00000411368 105 ntBASIC3.31□□□□□ -1.88
CCDC87Q9NVE4 RPS29P6-201ENST00000438196 145 ntBASIC3.31□□□□□ -1.88
CCDC87Q9NVE4 OR9P1P-201ENST00000496431 281 ntBASIC3.31□□□□□ -1.88
CCDC87Q9NVE4 AC108210.2-201ENST00000503681 201 ntBASIC3.31□□□□□ -1.88
CCDC87Q9NVE4 RNU1-142P-201ENST00000516682 145 ntBASIC3.31□□□□□ -1.88
CCDC87Q9NVE4 RNU6-971P-201ENST00000516920 106 ntBASIC3.31□□□□□ -1.88
CCDC87Q9NVE4 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC3.31□□□□□ -1.88
CCDC87Q9NVE4 AC120024.3-201ENST00000603167 156 ntBASIC3.31□□□□□ -1.88
CCDC87Q9NVE4 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC3.31□□□□□ -1.88
CCDC87Q9NVE4 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
CCDC87Q9NVE4 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
CCDC87Q9NVE4 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC3.3□□□□□ -1.88
CCDC87Q9NVE4 Y_RNA.127-201ENST00000363386 109 ntBASIC3.3□□□□□ -1.88
CCDC87Q9NVE4 RNU6-978P-201ENST00000364371 103 ntBASIC3.3□□□□□ -1.88
CCDC87Q9NVE4 Y_RNA.251-201ENST00000364551 99 ntBASIC3.3□□□□□ -1.88
CCDC87Q9NVE4 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC3.3□□□□□ -1.88
CCDC87Q9NVE4 Z96811.1-201ENST00000445880 108 ntBASIC3.3□□□□□ -1.88
CCDC87Q9NVE4 RNU6-1041P-201ENST00000516254 102 ntBASIC3.3□□□□□ -1.88
CCDC87Q9NVE4 AC007536.1-201ENST00000533382 349 ntBASIC3.3□□□□□ -1.88
CCDC87Q9NVE4 AC091178.2-201ENST00000584401 117 ntBASIC3.3□□□□□ -1.88
CCDC87Q9NVE4 U4.3-201ENST00000621047 82 ntBASIC3.3□□□□□ -1.88
CCDC87Q9NVE4 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC3.3□□□□□ -1.88
CCDC87Q9NVE4 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
CCDC87Q9NVE4 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
CCDC87Q9NVE4 AC093831.2-201ENST00000624393 3427 ntBASIC3.29□□□□□ -1.88
CCDC87Q9NVE4 RNU6-1290P-201ENST00000362957 109 ntBASIC3.29□□□□□ -1.88
CCDC87Q9NVE4 Y_RNA.242-201ENST00000364473 110 ntBASIC3.29□□□□□ -1.88
CCDC87Q9NVE4 RNA5SP205-201ENST00000364653 136 ntBASIC3.29□□□□□ -1.88
CCDC87Q9NVE4 SNORD116-14-201ENST00000383894 92 ntBASIC3.29□□□□□ -1.88
CCDC87Q9NVE4 SNORD116-17-201ENST00000383929 92 ntBASIC3.29□□□□□ -1.88
CCDC87Q9NVE4 SNORD116-15-201ENST00000384445 92 ntBASIC3.29□□□□□ -1.88
CCDC87Q9NVE4 SNORD116-19-201ENST00000384729 92 ntBASIC3.29□□□□□ -1.88
CCDC87Q9NVE4 MIR764-201ENST00000390811 85 ntBASIC3.29□□□□□ -1.88
CCDC87Q9NVE4 RNU6-482P-201ENST00000391068 107 ntBASIC3.29□□□□□ -1.88
CCDC87Q9NVE4 RN7SKP223-201ENST00000410582 62 ntBASIC3.29□□□□□ -1.88
CCDC87Q9NVE4 AL591806.2-201ENST00000433122 173 ntBASIC3.29□□□□□ -1.88
CCDC87Q9NVE4 ATP5J2P3-201ENST00000451550 258 ntBASIC3.29□□□□□ -1.88
CCDC87Q9NVE4 RNU6-1211P-201ENST00000459179 105 ntBASIC3.29□□□□□ -1.88
CCDC87Q9NVE4 RNU7-94P-201ENST00000459576 63 ntBASIC3.29□□□□□ -1.88
CCDC87Q9NVE4 AP004217.1-201ENST00000480579 346 ntBASIC3.29□□□□□ -1.88
CCDC87Q9NVE4 SNORA9.3-201ENST00000516383 129 ntBASIC3.29□□□□□ -1.88
CCDC87Q9NVE4 RNU6-341P-201ENST00000516973 96 ntBASIC3.29□□□□□ -1.88
CCDC87Q9NVE4 RNU7-128P-201ENST00000517247 62 ntBASIC3.29□□□□□ -1.88
CCDC87Q9NVE4 AC024995.1-201ENST00000523014 93 ntBASIC3.29□□□□□ -1.88
CCDC87Q9NVE4 U7.2-201ENST00000607576 63 ntBASIC3.29□□□□□ -1.88
CCDC87Q9NVE4 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 106.6 ms